Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011586

Physical Location & Seq

Genomic Coordinates Reverse (-)

22025286 .. 22025861

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G218800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACGACCGGCAAAACCCCGCGCAGAGGCCTTAAAATCTGCTGTGGTATAACAGCAATTTTCCTAGTTATTGTTGTCATTGTCCTCACAACATTATCACTCACCCTTTTGAAGCCTAAAGATCCCAAAATCAATGCCAAGCCAGTTGGCCTTGAGAACATTCAGTTTTCTCTGTTCCCAAATGTGACACTAAATGTCACACTAGGCATGCTTATTACAATAGAAAATAGGAACTATGGAAGCTTCATGTACAAGAATTCCACTGCTTATGTTCATTATCGAAACAGCGTCGTAGCGGAAGTTCCAATTGAAGGAGAACTTGTGCCTGCAAGAGGCAAGATCAACACGACCACCTCTGTGGATCTAAATGCAGAGACCCTAATATCAAATCCCAATTTCATTGCAGATGTCACTAGTGGGAGCTTGAACATGACCTCAACTGCTAGTTTACATGGGAAAGTGAGTTTGCTCAAGATCTTCAAGTTCCCCGCCACGGCTTTTAGCACGTGTAACATCTCGTTTTTCATCCTAACTAAGAGTATTGATTCTAAATGTGCGTCCAAAATCAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

192

Amino Acids

20.75

Weight (kDa)

9.64

Isoelectric Point (pI)

17.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43421
malus_domestica	MD17G1094400.v1.1
prunus_persica	Prupe.3G218800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159481 RchiOBHm_Chr2g0159781
rosa_laevigata	RLG00000021181
rosa_multiflora	Rmu_sc0002508.1_g000005 Rmu_sc0007710.1_g000001 Rmu_sc0016393.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090240 Rroxscaffold_2G00090490
rosa_rugosa	Rorug02G0476000
rosa_samantha	Rh2AG543200 Rh2BG555900 Rh2BG558300 Rh2CG526200 Rh2CG528300 Rh2DG565300
rosa_wichuraiana	Rw2G044930 Rw2G045080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	574
AccII	CGCG	1 cut(s)	22
AciI	CCGC	3 cut(s)	20, 296, 489
AclWI	GGATC	2 cut(s)	116, 369
AcsI	RAATTY	1 cut(s)	256
AcvI	CACGTG	1 cut(s)	507
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	4 cut(s)	26, 311, 332, 493
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	4 cut(s)	112, 311, 427, 481
AhlI	ACTAGT	1 cut(s)	413
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	2 cut(s)	243, 423
AluI	AGCT	2 cut(s)	243, 423
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	116, 369
AoxI	GGCC	2 cut(s)	28, 148
ApoI	RAATTY	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	94
BbrPI	CACGTG	1 cut(s)	507
BceAI	ACGGC	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	368
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	4 cut(s)	65, 203, 414, 444
BglII	AGATCT	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	173, 455
BsaAI	YACGTR	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	492
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 311, 332, 493
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	4 cut(s)	26, 311, 332, 493
BseMI	GCAATG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	30, 150
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	4 cut(s)	26, 311, 332, 493
BsmAI	GTCTC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	30, 150
Bso31I	GGTCTC	1 cut(s)	368
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	121, 339, 361, 474
BspACI	CCGC	3 cut(s)	20, 296, 489
BspANI	GGCC	2 cut(s)	30, 150
BspFNI	CGCG	1 cut(s)	22
BspPI	GGATC	2 cut(s)	116, 369
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	4 cut(s)	121, 339, 361, 474
BstAUI	TGTACA	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	209, 327
BstDEI	CTNAG	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	492
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	4 cut(s)	124, 342, 364, 477
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	4 cut(s)	121, 339, 361, 474
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	211
BstUI	CGCG	1 cut(s)	22
BstX2I	RGATCY	3 cut(s)	121, 361, 474
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	3 cut(s)	121, 361, 474
BsuRI	GGCC	2 cut(s)	30, 150
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	209, 327
CfoI	GCGC	1 cut(s)	24
Cfr10I	RCCGGY	1 cut(s)	8
CseI	GACGC	2 cut(s)	277, 546
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	4 cut(s)	208, 247, 430, 452
CviJI	RGCY	7 cut(s)	30, 115, 142, 150, 243, 423, 497
CviKI_1	RGCY	7 cut(s)	30, 115, 142, 150, 243, 423, 497
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	4 cut(s)	123, 341, 363, 476
DpnII	GATC	4 cut(s)	121, 339, 361, 474
Eco147I	AGGCCT	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	368
Eco72I	CACGTG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	256
FaeI	CATG	4 cut(s)	211, 250, 433, 455
FaiI	YATR	8 cut(s)	50, 209, 237, 248, 270, 431, 453, 574
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	4 cut(s)	207, 246, 429, 451
FauI	CCCGC	2 cut(s)	27, 496
FokI	GGATG	1 cut(s)	512
FspBI	CTAG	4 cut(s)	65, 203, 414, 444
GlaI	GCGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	30, 150
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	2 cut(s)	277, 546
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	4 cut(s)	211, 250, 433, 455
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	545
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	1 cut(s)	449
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	3 cut(s)	329, 371, 404
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	4 cut(s)	211, 250, 433, 455
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	4 cut(s)	121, 339, 361, 474
LmnI	GCTCC	1 cut(s)	420
LpnPI	CCDG	3 cut(s)	22, 156, 339
MaeI	CTAG	4 cut(s)	65, 203, 414, 444
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	4 cut(s)	184, 196, 409, 509
MalI	GATC	4 cut(s)	123, 341, 363, 476
MboI	GATC	4 cut(s)	121, 339, 361, 474
MboII	GAAGA	1 cut(s)	469
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	3 cut(s)	121, 361, 474
MluCI	AATT	4 cut(s)	57, 256, 306, 394
MnlI	CCTC	5 cut(s)	20, 95, 326, 364, 445
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	9
MunI	CAATTG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	22
NdeII	GATC	4 cut(s)	121, 339, 361, 474
NlaIII	CATG	4 cut(s)	211, 250, 433, 455
NmuCI	GTSAC	3 cut(s)	184, 196, 409
NspI	RCATGY	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	356
PaeI	GCATGC	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	545
PmaCI	CACGTG	1 cut(s)	507
PmlI	CACGTG	1 cut(s)	507
Ppu21I	YACGTR	1 cut(s)	507
PsiI	TTATAA	1 cut(s)	574
PspCI	CACGTG	1 cut(s)	507
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PsuI	RGATCY	3 cut(s)	121, 361, 474
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	4 cut(s)	121, 339, 361, 474
SetI	ASST	5 cut(s)	245, 356, 425, 437, 509
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	152, 470
SmoI	CTYRAG	2 cut(s)	152, 470
SpeI	ACTAGT	1 cut(s)	413
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	4 cut(s)	57, 256, 306, 394
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	3 cut(s)	20, 296, 489
SspMI	CTAG	4 cut(s)	65, 203, 414, 444
StuI	AGGCCT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	1 cut(s)	280
TasI	AATT	4 cut(s)	57, 256, 306, 394
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	3 cut(s)	184, 196, 409
Tsp45I	GTSAC	3 cut(s)	184, 196, 409
TspDTI	ATGAA	4 cut(s)	235, 263, 388, 514
TspRI	CASTG	1 cut(s)	268
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	1 cut(s)	256
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	4 cut(s)	65, 203, 414, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.