Late embryogenesis abundant protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g43421 |
| malus_domestica | MD17G1094400.v1.1 |
| prunus_persica | Prupe.3G218800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0159481 RchiOBHm_Chr2g0159781 |
| rosa_laevigata | RLG00000021181 |
| rosa_multiflora | Rmu_sc0002508.1_g000005 Rmu_sc0007710.1_g000001 Rmu_sc0016393.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00090240 Rroxscaffold_2G00090490 |
| rosa_rugosa | Rorug02G0476000 |
| rosa_samantha | Rh2AG543200 Rh2BG555900 Rh2BG558300 Rh2CG526200 Rh2CG528300 Rh2DG565300 |
| rosa_wichuraiana | Rw2G044930 Rw2G045080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 285 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 248 |
| AgsI | TTSAA | 6 cut(s) | 28, 71, 80, 169, 303, 343 |
| AleI | CACNNNNGTG | 1 cut(s) | 272 |
| Alw21I | GWGCWC | 1 cut(s) | 387 |
| AlwI | GGATC | 1 cut(s) | 285 |
| AoxI | GGCC | 1 cut(s) | 64 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 75 |
| AsuC2I | CCSGG | 1 cut(s) | 334 |
| AsuHPI | GGTGA | 2 cut(s) | 10, 256 |
| BauI | CACGAG | 1 cut(s) | 246 |
| Bbv12I | GWGCWC | 1 cut(s) | 387 |
| BccI | CCATC | 1 cut(s) | 217 |
| BceAI | ACGGC | 2 cut(s) | 195, 426 |
| BcnI | CCSGG | 1 cut(s) | 334 |
| BlpI | GCTNAGC | 1 cut(s) | 119 |
| Bme1390I | CCNGG | 1 cut(s) | 334 |
| BmiI | GGNNCC | 1 cut(s) | 219 |
| BmrFI | CCNGG | 1 cut(s) | 334 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 119 |
| BpuEI | CTTGAG | 1 cut(s) | 371 |
| BpuMI | CCSGG | 1 cut(s) | 334 |
| BsaJI | CCNNGG | 2 cut(s) | 177, 273 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 248 |
| BseDI | CCNNGG | 2 cut(s) | 177, 273 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 248 |
| BsgI | GTGCAG | 1 cut(s) | 228 |
| BshFI | GGCC | 1 cut(s) | 66 |
| BsiHKAI | GWGCWC | 1 cut(s) | 387 |
| BsiSI | CCGG | 1 cut(s) | 333 |
| BslFI | GGGAC | 1 cut(s) | 224 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 248 |
| BsmFI | GGGAC | 1 cut(s) | 224 |
| BsnI | GGCC | 1 cut(s) | 66 |
| Bsp1286I | GDGCHC | 1 cut(s) | 387 |
| Bsp143I | GATC | 3 cut(s) | 45, 277, 348 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 119 |
| BspANI | GGCC | 1 cut(s) | 66 |
| BspHI | TCATGA | 1 cut(s) | 393 |
| BspLI | GGNNCC | 1 cut(s) | 219 |
| BspPI | GGATC | 1 cut(s) | 285 |
| BssECI | CCNNGG | 2 cut(s) | 177, 273 |
| BssMI | GATC | 3 cut(s) | 45, 277, 348 |
| BssSI | CACGAG | 1 cut(s) | 246 |
| Bst2BI | CACGAG | 1 cut(s) | 246 |
| Bst4CI | ACNGT | 3 cut(s) | 22, 205, 382 |
| BstC8I | GCNNGC | 3 cut(s) | 125, 231, 452 |
| BstDEI | CTNAG | 2 cut(s) | 119, 465 |
| BstDSI | CCRYGG | 2 cut(s) | 177, 273 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 246 |
| BstKTI | GATC | 3 cut(s) | 48, 280, 351 |
| BstMBI | GATC | 3 cut(s) | 45, 277, 348 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 124 |
| BstNSI | RCATGY | 3 cut(s) | 127, 233, 426 |
| BstSCI | CCNGG | 1 cut(s) | 332 |
| BstX2I | RGATCY | 1 cut(s) | 277 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 274 |
| BstYI | RGATCY | 1 cut(s) | 277 |
| BsuRI | GGCC | 1 cut(s) | 66 |
| BtgI | CCRYGG | 2 cut(s) | 177, 273 |
| Cac8I | GCNNGC | 3 cut(s) | 125, 231, 452 |
| CciI | TCATGA | 1 cut(s) | 393 |
| CseI | GACGC | 1 cut(s) | 124 |
| CviAII | CATG | 6 cut(s) | 124, 230, 316, 368, 394, 423 |
| CviJI | RGCY | 4 cut(s) | 31, 66, 213, 413 |
| CviKI_1 | RGCY | 4 cut(s) | 31, 66, 213, 413 |
| DdeI | CTNAG | 2 cut(s) | 119, 465 |
| DpnI | GATC | 3 cut(s) | 47, 279, 350 |
| DpnII | GATC | 3 cut(s) | 45, 277, 348 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 246 |
| FaeI | CATG | 6 cut(s) | 127, 233, 319, 371, 397, 426 |
| FaqI | GGGAC | 1 cut(s) | 224 |
| FatI | CATG | 6 cut(s) | 123, 229, 315, 367, 393, 422 |
| FauNDI | CATATG | 1 cut(s) | 184 |
| HaeIII | GGCC | 1 cut(s) | 66 |
| HapII | CCGG | 1 cut(s) | 333 |
| HgaI | GACGC | 1 cut(s) | 124 |
| Hin1II | CATG | 6 cut(s) | 127, 233, 319, 371, 397, 426 |
| HinfI | GANTC | 1 cut(s) | 461 |
| HpaII | CCGG | 1 cut(s) | 333 |
| HphI | GGTGA | 2 cut(s) | 10, 256 |
| Hpy188I | TCNGA | 2 cut(s) | 96, 222 |
| Hpy188III | TCNNGA | 5 cut(s) | 133, 169, 197, 352, 394 |
| HpyCH4III | ACNGT | 3 cut(s) | 22, 205, 382 |
| HpyCH4V | TGCA | 2 cut(s) | 245, 471 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 124 |
| HpyF3I | CTNAG | 2 cut(s) | 119, 465 |
| Hsp92II | CATG | 6 cut(s) | 127, 233, 319, 371, 397, 426 |
| Kzo9I | GATC | 3 cut(s) | 45, 277, 348 |
| LmnI | GCTCC | 1 cut(s) | 226 |
| LpnPI | CCDG | 3 cut(s) | 54, 255, 346 |
| MaeIII | GTNAC | 5 cut(s) | 100, 112, 130, 187, 376 |
| MalI | GATC | 3 cut(s) | 47, 279, 350 |
| MboI | GATC | 3 cut(s) | 45, 277, 348 |
| MboII | GAAGA | 1 cut(s) | 332 |
| MflI | RGATCY | 1 cut(s) | 277 |
| MhlI | GDGCHC | 1 cut(s) | 387 |
| MluCI | AATT | 3 cut(s) | 148, 343, 456 |
| MnlI | CCTC | 3 cut(s) | 242, 280, 318 |
| MroXI | GAANNNNTTC | 1 cut(s) | 75 |
| MslI | CAYNNNNRTG | 1 cut(s) | 272 |
| MspI | CCGG | 1 cut(s) | 333 |
| MspR9I | CCNGG | 1 cut(s) | 334 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 124 |
| NciI | CCSGG | 1 cut(s) | 334 |
| NdeI | CATATG | 1 cut(s) | 184 |
| NdeII | GATC | 3 cut(s) | 45, 277, 348 |
| NlaIII | CATG | 6 cut(s) | 127, 233, 319, 371, 397, 426 |
| NlaIV | GGNNCC | 1 cut(s) | 219 |
| NmuCI | GTSAC | 4 cut(s) | 100, 112, 130, 376 |
| NspI | RCATGY | 3 cut(s) | 127, 233, 426 |
| OliI | CACNNNNGTG | 1 cut(s) | 272 |
| PaeI | GCATGC | 2 cut(s) | 127, 233 |
| PagI | TCATGA | 1 cut(s) | 393 |
| PdmI | GAANNNNTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 1 cut(s) | 461 |
| PspN4I | GGNNCC | 1 cut(s) | 219 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 201, 233 |
| PsuI | RGATCY | 1 cut(s) | 277 |
| RseI | CAYNNNNRTG | 1 cut(s) | 272 |
| Sau3AI | GATC | 3 cut(s) | 45, 277, 348 |
| ScrFI | CCNGG | 1 cut(s) | 334 |
| SduI | GDGCHC | 1 cut(s) | 387 |
| SetI | ASST | 1 cut(s) | 272 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 272 |
| SmlI | CTYRAG | 1 cut(s) | 386 |
| SmoI | CTYRAG | 1 cut(s) | 386 |
| SphI | GCATGC | 2 cut(s) | 127, 233 |
| Sse9I | AATT | 3 cut(s) | 148, 343, 456 |
| StyD4I | CCNGG | 1 cut(s) | 332 |
| TaaI | ACNGT | 3 cut(s) | 22, 205, 382 |
| TaqI | TCGA | 1 cut(s) | 353 |
| TasI | AATT | 3 cut(s) | 148, 343, 456 |
| TfiI | GAWTC | 1 cut(s) | 461 |
| TseFI | GTSAC | 4 cut(s) | 100, 112, 130, 376 |
| Tsp45I | GTSAC | 4 cut(s) | 100, 112, 130, 376 |
| TspDTI | ATGAA | 3 cut(s) | 304, 382, 410 |
| TspGWI | ACGGA | 1 cut(s) | 262 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 246 |
| XceI | RCATGY | 3 cut(s) | 127, 233, 426 |
| XmnI | GAANNNNTTC | 1 cut(s) | 75 |