FvH4_6g43550

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016180
Physical Location & Seq
Reverse (-)
33666103 .. 33669873
3771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43550.t2

Sequence Viewer

Length: 858 bp
ATGGCGGATGCTTCAAAAGACGAGCTTCTCCAACTCATCAAGCGCTTCGGCACTTATCTCACTGTCAAGATGTCCTCTTTATTCTCGATCTCCTCCCAAAACTTGAATACACGTTCTATTGGGGCAATTGCTGGCTTTGCGGTTGCGATAGTTTTTACCTGGAGGCTTTTTAGAACTCCTGCTGGACCCCAAAGAAGGCAGCCAAAGCGCCAGGCACCGGCTTCCAGTAGTTCTGGGGTCAATTCGCCTTCTAATTCTACGTTGACGGCTACGGGAGTTTCGTTGTCAGAAGATACAAGAGCACAGAATGTTGTCGATGAGTTCTTTCAGCCGGTAAAGCCAACCTTGGGGCAGATAGTTAGACAGAAACTGAGTGAAGGAAGAAAGGTGACTTGTCGTTTACTTGGAGTGATCCTGGAGGAAAGTACCCCAGAGGAACTTCAGAAACAAGTGACGGTGAAGTACTCAGTGCTAGAAGTACTCTTGGAGATCACAAAATATTGCGATCTGTATCTAATGGAAAAAGTTTTGGATGATGAAACTGAAGTATGTGAGAGCCTCTATGCATCAACCATGTTGTTCTTGAACAAGGTTCTGTCGGCTTTGGAAGATGCTGGGGTTTTCACATCAGGGGGTTTGGTCAAAGACAAGGTTCTGTTCTGCAGCACAGAGAATGGACGCACATCCTTTGTCCGGCAGTTGGAACCAGATTGGCATATCGACACAAACCCTGAGATCATCTTTCAATTATCTAGGTTTATCAAGTATCAGCTTCACATCTCTCCTACTAGATCTGAACGGGCTGCTTCCAATGTGTTTAACTCCCCATCCTTGGAACAGTTCTTTGGATGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

31.77

Weight (kDa)

6.76

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_Pex22 PF22978 118 - 268 5.1e-46 Peroxisome biogenesis protein 22, Haloacid dehydrogenase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21865
fragaria_vesca FvH4_6g43550 FvH4_6g43550
malus_domestica MD09G1105000.v1.1 MD17G1092700.v1.1
prunus_persica Prupe.3G220500_v2.0.a1 Prupe.3G220500_v2.0.a1
pyrus_communis pycom09g02810 pycom17g09030
rosa_chinensis RchiOBHm_Chr2g0160081
rosa_laevigata RLG00000021196
rosa_rugosa Rorug02G0480900
rosa_samantha Rh2AG546800 Rh2BG560200
rosa_wichuraiana Rw2G045220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AciI CCGC 2 cut(s) 5, 140
AclWI GGATC 1 cut(s) 406
AcuI CTGAAG 2 cut(s) 425, 564
AfaI GTAC 3 cut(s) 427, 464, 480
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 6 cut(s) 195, 217, 347, 693, 700, 832
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 4 cut(s) 15, 106, 586, 746
AjnI CCWGG 3 cut(s) 158, 210, 414
AjuI GAANNNNNNNTTGG 1 cut(s) 828
AluBI AGCT 2 cut(s) 25, 772
AluI AGCT 2 cut(s) 25, 772
Alw21I GWGCWC 1 cut(s) 304
AlwI GGATC 1 cut(s) 406
AlwNI CAGNNNCTG 1 cut(s) 370
Aor51HI AGCGCT 1 cut(s) 44
ApeKI GCWGC 3 cut(s) 199, 663, 803
AspLEI GCGC 2 cut(s) 45, 210
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 400, 469
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 211, 675, 790
BccI CCATC 1 cut(s) 835
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 3 cut(s) 160, 212, 416
BfaI CTAG 3 cut(s) 473, 753, 789
BfmI CTRYAG 1 cut(s) 661
BfoI RGCGCY 2 cut(s) 46, 211
BglII AGATCT 1 cut(s) 791
BisI GCNGC 3 cut(s) 200, 664, 804
BlsI GCNGC 3 cut(s) 201, 665, 805
BmcAI AGTACT 2 cut(s) 464, 480
Bme1390I CCNGG 3 cut(s) 160, 212, 416
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 3 cut(s) 187, 216, 705
BmrFI CCNGG 3 cut(s) 160, 212, 416
BmsI GCATC 3 cut(s) 575, 601, 839
BpmI CTGGAG 2 cut(s) 181, 437
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 345, 831
Bsc4I CCNNNNNNNGG 6 cut(s) 195, 217, 347, 693, 700, 832
Bse118I RCCGGY 2 cut(s) 217, 331
Bse1I ACTGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 3 cut(s) 160, 212, 416
BseDI CCNNGG 2 cut(s) 345, 831
BseGI GGATG 5 cut(s) 13, 538, 683, 827, 854
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 6 cut(s) 195, 217, 347, 693, 700, 832
BseMII CTCAG 3 cut(s) 362, 480, 723
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 3 cut(s) 211, 675, 790
BseYI CCCAGC 1 cut(s) 614
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 3 cut(s) 218, 332, 694
BslI CCNNNNNNNGG 6 cut(s) 195, 217, 347, 693, 700, 832
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 6 cut(s) 87, 411, 489, 505, 735, 791
BspACI CCGC 2 cut(s) 5, 140
BspCNI CTCAG 3 cut(s) 363, 479, 724
BspLI GGNNCC 3 cut(s) 187, 216, 705
BspMAI CTGCAG 1 cut(s) 665
BspPI GGATC 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 214
BsrFI RCCGGY 2 cut(s) 217, 331
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 2 cut(s) 217, 331
BssECI CCNNGG 2 cut(s) 345, 831
BssMI GATC 6 cut(s) 87, 411, 489, 505, 735, 791
BssT1I CCWWGG 2 cut(s) 345, 831
Bst2UI CCWGG 3 cut(s) 160, 212, 416
Bst4CI ACNGT 3 cut(s) 64, 457, 840
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 371, 466, 732
BstF5I GGATG 5 cut(s) 13, 538, 683, 827, 854
BstH2I RGCGCY 2 cut(s) 46, 211
BstHHI GCGC 2 cut(s) 45, 210
BstKTI GATC 6 cut(s) 90, 414, 492, 508, 738, 794
BstMBI GATC 6 cut(s) 87, 411, 489, 505, 735, 791
BstMWI GCNNNNNNNGC 3 cut(s) 137, 205, 337
BstNI CCWGG 3 cut(s) 160, 212, 416
BstSCI CCNGG 3 cut(s) 158, 210, 414
BstSFI CTRYAG 1 cut(s) 661
BstV1I GCAGC 3 cut(s) 211, 675, 790
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BtsCI GGATG 5 cut(s) 13, 538, 683, 827, 854
BtsIMutI CAGTG 2 cut(s) 60, 474
Cac8I GCNNGC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 2 cut(s) 45, 210
Cfr10I RCCGGY 2 cut(s) 217, 331
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 687
Csp6I GTAC 3 cut(s) 426, 463, 479
CviAII CATG 1 cut(s) 574
CviQI GTAC 3 cut(s) 426, 463, 479
DdeI CTNAG 3 cut(s) 371, 466, 732
DpnI GATC 6 cut(s) 89, 413, 491, 507, 737, 793
DpnII GATC 6 cut(s) 87, 411, 489, 505, 735, 791
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 345, 831
Eco47I GGWCC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 425, 564
EcoRII CCWGG 3 cut(s) 158, 210, 414
EcoT14I CCWWGG 2 cut(s) 345, 831
EcoT22I ATGCAT 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 345, 831
FaeI CATG 1 cut(s) 577
FaiI YATR 4 cut(s) 550, 564, 575, 717
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 329, 361
FatI CATG 1 cut(s) 573
Fnu4HI GCNGC 3 cut(s) 200, 664, 804
FokI GGATG 4 cut(s) 20, 545, 670, 814
Fsp4HI GCNGC 3 cut(s) 200, 664, 804
FspBI CTAG 3 cut(s) 473, 753, 789
GlaI GCGC 2 cut(s) 44, 209
GluI GCNGC 3 cut(s) 200, 664, 804
GsaI CCCAGC 1 cut(s) 618
GsuI CTGGAG 2 cut(s) 181, 437
HaeII RGCGCY 2 cut(s) 46, 211
HapII CCGG 3 cut(s) 218, 332, 694
HgaI GACGC 1 cut(s) 687
HhaI GCGC 2 cut(s) 45, 210
Hin1II CATG 1 cut(s) 577
Hin6I GCGC 2 cut(s) 43, 208
HinP1I GCGC 2 cut(s) 43, 208
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HpaII CCGG 3 cut(s) 218, 332, 694
HphI GGTGA 2 cut(s) 400, 469
Hpy166II GTNNAC 2 cut(s) 264, 401
Hpy188I TCNGA 3 cut(s) 289, 444, 796
Hpy188III TCNNGA 3 cut(s) 67, 85, 583
Hpy8I GTNNAC 2 cut(s) 264, 401
HpyAV CCTTC 3 cut(s) 189, 258, 371
HpyCH4III ACNGT 3 cut(s) 64, 457, 840
HpyCH4IV ACGT 2 cut(s) 112, 260
HpyCH4V TGCA 2 cut(s) 566, 663
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 205, 337
HpyF3I CTNAG 3 cut(s) 371, 466, 732
HpySE526I ACGT 2 cut(s) 112, 260
Hsp92II CATG 1 cut(s) 577
HspAI GCGC 2 cut(s) 43, 208
Kzo9I GATC 6 cut(s) 87, 411, 489, 505, 735, 791
Lsp1109I GCAGC 3 cut(s) 211, 675, 790
LweI GCATC 3 cut(s) 575, 601, 839
MaeI CTAG 3 cut(s) 473, 753, 789
MaeII ACGT 2 cut(s) 112, 260
MaeIII GTNAC 2 cut(s) 388, 451
MalI GATC 6 cut(s) 89, 413, 491, 507, 737, 793
MboI GATC 6 cut(s) 87, 411, 489, 505, 735, 791
MboII GAAGA 3 cut(s) 302, 393, 620
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 4 cut(s) 126, 241, 253, 746
MmeI TCCRAC 2 cut(s) 55, 681
MnlI CCTC 6 cut(s) 85, 103, 156, 412, 427, 569
Mph1103I ATGCAT 1 cut(s) 568
MseI TTAA 1 cut(s) 819
MspI CCGG 3 cut(s) 218, 332, 694
MspR9I CCNGG 3 cut(s) 160, 212, 416
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 3 cut(s) 160, 212, 416
MwoI GCNNNNNNNGC 3 cut(s) 137, 205, 337
NdeII GATC 6 cut(s) 87, 411, 489, 505, 735, 791
NlaIII CATG 1 cut(s) 577
NlaIV GGNNCC 3 cut(s) 187, 216, 705
NmuCI GTSAC 2 cut(s) 388, 451
NsiI ATGCAT 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 3 cut(s) 201, 665, 805
Psp6I CCWGG 3 cut(s) 158, 210, 414
PspFI CCCAGC 1 cut(s) 614
PspGI CCWGG 3 cut(s) 158, 210, 414
PspN4I GGNNCC 3 cut(s) 187, 216, 705
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 665
PstNI CAGNNNCTG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 791
RsaI GTAC 3 cut(s) 427, 464, 480
RsaNI GTAC 3 cut(s) 426, 463, 479
SaqAI TTAA 1 cut(s) 819
SatI GCNGC 3 cut(s) 200, 664, 804
Sau3AI GATC 6 cut(s) 87, 411, 489, 505, 735, 791
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 2 cut(s) 464, 480
ScrFI CCNGG 3 cut(s) 160, 212, 416
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 3 cut(s) 575, 601, 839
SfcI CTRYAG 1 cut(s) 661
SinI GGWCC 1 cut(s) 185
Sse9I AATT 4 cut(s) 126, 241, 253, 746
SsiI CCGC 2 cut(s) 5, 140
SspI AATATT 1 cut(s) 500
SspMI CTAG 3 cut(s) 473, 753, 789
StyD4I CCNGG 3 cut(s) 158, 210, 414
StyI CCWWGG 2 cut(s) 345, 831
TaaI ACNGT 3 cut(s) 64, 457, 840
TaiI ACGT 2 cut(s) 115, 263
TaqI TCGA 3 cut(s) 86, 315, 720
TasI AATT 4 cut(s) 126, 241, 253, 746
TatI WGTACW 2 cut(s) 462, 478
Tru1I TTAA 1 cut(s) 819
Tru9I TTAA 1 cut(s) 819
TscAI CASTG 2 cut(s) 67, 474
TseFI GTSAC 2 cut(s) 388, 451
TseI GCWGC 3 cut(s) 199, 663, 803
Tsp45I GTSAC 2 cut(s) 388, 451
TspDTI ATGAA 1 cut(s) 552
TspRI CASTG 2 cut(s) 67, 474
VpaK11BI GGWCC 1 cut(s) 185
XspI CTAG 3 cut(s) 473, 753, 789
ZrmI AGTACT 2 cut(s) 464, 480
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.