MD09G1105000.v1.1

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016180
Physical Location & Seq
Forward (+)
7653385 .. 7657349
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1105000.v1.1.491

Sequence Viewer

Length: 819 bp
ATGGCCGAGTCTTCAAAGGAAGAGCTGCTTCAGCTCATCAAGCGCTTCGGGGCTTATCTCACTGTCAAGATGTCCAGTCTATTCCCGATCTCCCTCCACAATCTGAATTCACGTTCTATTGGGGCAATTGCGGGCTTTGCTGTCGCAATAGTTTTCACATGGAGGCTGCTGAGACCACCGAGTGGACCTCAAAGAAGGCAACCCAAGCGGCAGGCACCTGCATCGAGTAGTTCTGGCATCAGTTCAAATTCAAATGCAACATTGACAACTCCGGGAGTTTCATCTTCAGAGGACTCAAGAACCCAAAACGTTGTTGATGAATTTTTTCAGCCAGTAAAGCCTACTTTGGGGCAAATAGTTCGGCAGAAACTGAGTGAAGGAAGAAAGGTAACTTGTCGTTTACTCGGAGTAATCCTTGAGGAAAGTACCCCGGAGGAACTTCAGAAACAAGTTACTGTGAGGTACTCAGTGCTGGAAGTACTCTTGGAGATCACAAAATTTTGTGATCTGTATCTCATGGAAAGAGTTCTTGATGATGAAAGTGAAAAAAAGGTTCTAATGGCTTTGGAAGATGCTGGGATTTTCACATCTGGAGGTTTGGTCAAAGACAAGGTTCTCTTCTGTAGCACAGAGAATGGACGGACCTCTTTTGTTCGGCAATTGGAACCAGATTGGCATATCGACACCAATCCTGACATCATATTCCAATTATCGAGGTTTATCAAGTATCAGCTTCACATATCTCCTACCAGAACGGAACGGGCTGCTTCTAATGCTTTCAACTCCCCATCCTTGGAACAGTTCTTTGGACGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.46

Weight (kDa)

8.74

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_Pex22 PF22978 118 - 268 5.6e-46 Peroxisome biogenesis protein 22, Haloacid dehydrogenase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21865
fragaria_vesca FvH4_6g43550 FvH4_6g43550
malus_domestica MD09G1105000.v1.1 MD17G1092700.v1.1
prunus_persica Prupe.3G220500_v2.0.a1 Prupe.3G220500_v2.0.a1
pyrus_communis pycom09g02810 pycom17g09030
rosa_chinensis RchiOBHm_Chr2g0160081
rosa_laevigata RLG00000021196
rosa_rugosa Rorug02G0480900
rosa_samantha Rh2AG546800 Rh2BG560200
rosa_wichuraiana Rw2G045220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
Acc36I ACCTGC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 182
AciI CCGC 2 cut(s) 131, 208
AclI AACGTT 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 106, 247, 320, 497
AcuI CTGAAG 3 cut(s) 14, 270, 425
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 3 cut(s) 427, 464, 480
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 3 cut(s) 182, 347, 793
AflIII ACRYGT 1 cut(s) 811
AgsI TTSAA 4 cut(s) 15, 246, 252, 781
AjiI CACGTC 1 cut(s) 812
AjuI GAANNNNNNNTTGG 1 cut(s) 789
AluBI AGCT 3 cut(s) 25, 34, 733
AluI AGCT 3 cut(s) 25, 34, 733
Alw26I GTCTC 1 cut(s) 166
AlwNI CAGNNNCTG 1 cut(s) 370
Aor51HI AGCGCT 1 cut(s) 44
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 25, 166, 764
ApoI RAATTY 4 cut(s) 106, 247, 320, 497
Asp700I GAANNNNTTC 2 cut(s) 324, 525
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 185, 642
AsuC2I CCSGG 2 cut(s) 273, 431
AvaII GGWCC 2 cut(s) 185, 642
BanI GGYRCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 3
BbvI GCAGC 3 cut(s) 12, 153, 751
BccI CCATC 1 cut(s) 796
BcgI CGANNNNNNTGC 4 cut(s) 204, 238, 341, 375
BcnI CCSGG 2 cut(s) 273, 431
BcoDI GTCTC 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 622
BfoI RGCGCY 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 4 cut(s) 26, 167, 209, 765
BlsI GCNGC 4 cut(s) 27, 168, 210, 766
BmcAI AGTACT 1 cut(s) 480
Bme1390I CCNGG 2 cut(s) 273, 431
Bme18I GGWCC 2 cut(s) 185, 642
BmgBI CACGTC 1 cut(s) 812
BmgT120I GGNCC 2 cut(s) 185, 642
BmiI GGNNCC 2 cut(s) 216, 666
BmrFI CCNGG 2 cut(s) 273, 431
BmsI GCATC 3 cut(s) 230, 246, 562
BpiI GAAGAC 1 cut(s) 3
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpmI CTGGAG 1 cut(s) 612
BpuEI CTTGAG 2 cut(s) 280, 437
BpuMI CCSGG 2 cut(s) 273, 431
BsaBI GATNNNNATC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 429, 792
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 347, 793
Bse1I ACTGG 2 cut(s) 75, 332
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 429, 792
BseGI GGATG 1 cut(s) 788
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 3 cut(s) 182, 347, 793
BseMII CTCAG 3 cut(s) 161, 362, 480
BseNI ACTGG 2 cut(s) 75, 332
BseXI GCAGC 3 cut(s) 12, 153, 751
BseYI CCCAGC 1 cut(s) 575
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 214
BsiSI CCGG 2 cut(s) 272, 431
BslI CCNNNNNNNGG 3 cut(s) 182, 347, 793
BsmAI GTCTC 1 cut(s) 166
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 87, 489, 505
BspACI CCGC 2 cut(s) 131, 208
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 162, 363, 479
BspLI GGNNCC 2 cut(s) 216, 666
BspMI ACCTGC 1 cut(s) 226
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 166
BsrI ACTGG 2 cut(s) 75, 332
BssECI CCNNGG 2 cut(s) 429, 792
BssMI GATC 3 cut(s) 87, 489, 505
BssT1I CCWWGG 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 64, 457, 801
Bst6I CTCTTC 2 cut(s) 15, 623
BstC8I GCNNGC 2 cut(s) 133, 213
BstDEI CTNAG 3 cut(s) 170, 371, 466
BstF5I GGATG 1 cut(s) 788
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 3 cut(s) 90, 492, 508
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 3 cut(s) 87, 489, 505
BstMWI GCNNNNNNNGC 6 cut(s) 31, 40, 137, 205, 337, 773
BstSCI CCNGG 2 cut(s) 271, 429
BstSFI CTRYAG 1 cut(s) 622
BstV1I GCAGC 3 cut(s) 12, 153, 751
BstV2I GAAGAC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 812
BtsCI GGATG 1 cut(s) 788
BtsIMutI CAGTG 2 cut(s) 60, 474
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 133, 213
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 185, 642
Csp6I GTAC 3 cut(s) 426, 463, 479
CviAII CATG 2 cut(s) 159, 517
CviQI GTAC 3 cut(s) 426, 463, 479
DdeI CTNAG 3 cut(s) 170, 371, 466
DpnI GATC 3 cut(s) 89, 491, 507
DpnII GATC 3 cut(s) 87, 489, 505
DraIII CACNNNGTG 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 15, 623
EarI CTCTTC 2 cut(s) 15, 623
Eco130I CCWWGG 1 cut(s) 792
Eco31I GGTCTC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 185, 642
Eco47III AGCGCT 1 cut(s) 44
Eco57I CTGAAG 3 cut(s) 14, 270, 425
EcoRI GAATTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 2 cut(s) 162, 520
FaiI YATR 5 cut(s) 160, 518, 678, 701, 740
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 602, 634
FatI CATG 2 cut(s) 158, 516
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 26, 167, 209, 765
FokI GGATG 1 cut(s) 775
Fsp4HI GCNGC 4 cut(s) 26, 167, 209, 765
GlaI GCGC 1 cut(s) 44
GluI GCNGC 4 cut(s) 26, 167, 209, 765
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 272, 431
HhaI GCGC 1 cut(s) 45
Hin1II CATG 2 cut(s) 162, 520
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 2 cut(s) 8, 293
HpaII CCGG 2 cut(s) 272, 431
Hpy166II GTNNAC 2 cut(s) 185, 401
Hpy188I TCNGA 4 cut(s) 105, 289, 407, 444
Hpy188III TCNNGA 6 cut(s) 67, 85, 297, 530, 591, 692
Hpy8I GTNNAC 2 cut(s) 185, 401
HpyAV CCTTC 2 cut(s) 189, 371
HpyCH4III ACNGT 3 cut(s) 64, 457, 801
HpyCH4IV ACGT 3 cut(s) 112, 309, 811
HpyCH4V TGCA 2 cut(s) 221, 257
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 40, 137, 205, 337, 773
HpyF3I CTNAG 3 cut(s) 170, 371, 466
HpySE526I ACGT 3 cut(s) 112, 309, 811
Hsp92II CATG 2 cut(s) 162, 520
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 87, 489, 505
LguI GCTCTTC 1 cut(s) 15
Lsp1109I GCAGC 3 cut(s) 12, 153, 751
LweI GCATC 3 cut(s) 230, 246, 562
MaeII ACGT 3 cut(s) 112, 309, 811
MaeIII GTNAC 2 cut(s) 388, 451
MalI GATC 3 cut(s) 89, 491, 507
MboI GATC 3 cut(s) 87, 489, 505
MboII GAAGA 6 cut(s) 3, 32, 276, 393, 581, 610
MfeI CAATTG 2 cut(s) 126, 659
MluCI AATT 7 cut(s) 106, 126, 247, 320, 497, 659, 707
MlyI GAGTC 2 cut(s) 17, 287
MroXI GAANNNNTTC 2 cut(s) 324, 525
MspI CCGG 2 cut(s) 272, 431
MspR9I CCNGG 2 cut(s) 273, 431
MunI CAATTG 2 cut(s) 126, 659
MwoI GCNNNNNNNGC 6 cut(s) 31, 40, 137, 205, 337, 773
NciI CCSGG 2 cut(s) 273, 431
NdeII GATC 3 cut(s) 87, 489, 505
NlaIII CATG 2 cut(s) 162, 520
NlaIV GGNNCC 2 cut(s) 216, 666
NmeAIII GCCGAG 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 15
PdmI GAANNNNTTC 2 cut(s) 324, 525
PflMI CCANNNNNTGG 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 4 cut(s) 27, 168, 210, 766
PleI GAGTC 2 cut(s) 16, 287
PpsI GAGTC 2 cut(s) 16, 287
Psp1406I AACGTT 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 575
PspN4I GGNNCC 2 cut(s) 216, 666
PspPI GGNCC 2 cut(s) 185, 642
PstNI CAGNNNCTG 1 cut(s) 370
RsaI GTAC 3 cut(s) 427, 464, 480
RsaNI GTAC 3 cut(s) 426, 463, 479
SapI GCTCTTC 1 cut(s) 15
SatI GCNGC 4 cut(s) 26, 167, 209, 765
Sau3AI GATC 3 cut(s) 87, 489, 505
Sau96I GGNCC 2 cut(s) 185, 642
ScaI AGTACT 1 cut(s) 480
SchI GAGTC 2 cut(s) 17, 287
ScrFI CCNGG 2 cut(s) 273, 431
SfaNI GCATC 3 cut(s) 230, 246, 562
SfcI CTRYAG 1 cut(s) 622
SinI GGWCC 2 cut(s) 185, 642
SmlI CTYRAG 2 cut(s) 295, 416
SmoI CTYRAG 2 cut(s) 295, 416
Sse9I AATT 7 cut(s) 106, 126, 247, 320, 497, 659, 707
SsiI CCGC 2 cut(s) 131, 208
StyD4I CCNGG 2 cut(s) 271, 429
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 64, 457, 801
TaiI ACGT 3 cut(s) 115, 312, 814
TaqI TCGA 3 cut(s) 224, 681, 713
TasI AATT 7 cut(s) 106, 126, 247, 320, 497, 659, 707
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 211
TscAI CASTG 2 cut(s) 67, 474
TseI GCWGC 3 cut(s) 25, 166, 764
TspDTI ATGAA 3 cut(s) 270, 333, 552
TspGWI ACGGA 2 cut(s) 655, 770
TspRI CASTG 2 cut(s) 67, 474
Van91I CCANNNNNTGG 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 185, 642
XapI RAATTY 4 cut(s) 106, 247, 320, 497
XmnI GAANNNNTTC 2 cut(s) 324, 525
ZrmI AGTACT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.