RLG00000021196

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016180
Physical Location & Seq
Reverse (-)
72822705 .. 72825978
3274 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021196

Sequence Viewer

Length: 819 bp
ATGGCCGATTCTTCAAAAGAAGAGCTGCTCCAACTCATCAAGCGCTTCGGGGCTTATCTCTCTGTCAAGATGTCCACTTTATTCTCGATCTCCTCCCAAAACATGAATACACGTTCTATAGGGGCAATTGCTGGCTTTGCGGTAGCAATAGTTTTTACCTGGAGGCTTTTTAGATCTCCCACTGGACCTCAAAGAAGGCAGCCAAAACGGCAGGCACCTGCATCCAGTAGTTCTGGCGTCAATCCTCCTTCAAACTCAACGCTGACAACTACGGGAGTTTCATCATCAGAAGATACAAGAGCACAAAATGTTGTTGACGAGTTCTTTCAGCCAGTGAAGCCAACCTTGGGGCAGATAGTTAGACAGAAACTGAGTGAAGGAAGAAAGGTGACTTGTCGTTTACTTGGAGTAATCCTGGAGGAAGGTAGCCCAGAGGAACTTCAGAAACAAGTGACTGTGAAGTACTCGGTGCTAGAAGTACTCTTGGAGATCTCAAAATATTGCGATCTGTATCTAATGGAAAGAGTTCTGGATGATGAAACTGAAAACAAGGTTCTATTGGCTTTGGAAGATGTTGGGGTTTTCACATCTGGGGGTTTGGTCAAAGACAAGGTTCTGTTCTGCAGCACAGAGAATGGACGGACATCCTTTGTTCGGCAGTTGGAACCAGATTGGCATATTGACACAAATCCTGAGATCATCTTCCAATTATCTAGGTTTATCAAGTATCAGCTTCACATCTCTCCTACCAGATCTGAACGAGCTACTTCCAATGTGTTTAACTCCCCATCCTTAGAACAATTCTTTGGATGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.41

Weight (kDa)

7.63

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_Pex22 PF22978 118 - 268 4e-46 Peroxisome biogenesis protein 22, Haloacid dehydrogenase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21865
fragaria_vesca FvH4_6g43550 FvH4_6g43550
malus_domestica MD09G1105000.v1.1 MD17G1092700.v1.1
prunus_persica Prupe.3G220500_v2.0.a1 Prupe.3G220500_v2.0.a1
pyrus_communis pycom09g02810 pycom17g09030
rosa_chinensis RchiOBHm_Chr2g0160081
rosa_laevigata RLG00000021196
rosa_rugosa Rorug02G0480900
rosa_samantha Rh2AG546800 Rh2BG560200
rosa_wichuraiana Rw2G045220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
Acc36I ACCTGC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 214
AciI CCGC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 464, 480
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 347, 654
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 2 cut(s) 15, 252
AjnI CCWGG 2 cut(s) 158, 414
AjuI GAANNNNNNNTTGG 3 cut(s) 329, 361, 789
AluBI AGCT 3 cut(s) 25, 733, 764
AluI AGCT 3 cut(s) 25, 733, 764
Alw21I GWGCWC 1 cut(s) 304
AlwNI CAGNNNCTG 1 cut(s) 370
Aor51HI AGCGCT 1 cut(s) 44
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 25, 199, 624
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 12, 211, 636
BccI CCATC 1 cut(s) 796
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 160, 416
BfaI CTAG 2 cut(s) 473, 714
BfmI CTRYAG 2 cut(s) 117, 622
BfoI RGCGCY 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 208
BglII AGATCT 3 cut(s) 173, 489, 752
BisI GCNGC 3 cut(s) 26, 200, 625
BlsI GCNGC 3 cut(s) 27, 201, 626
BmcAI AGTACT 2 cut(s) 464, 480
Bme1390I CCNGG 2 cut(s) 160, 416
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 216, 666
BmrFI CCNGG 2 cut(s) 160, 416
BmsI GCATC 2 cut(s) 230, 800
BpmI CTGGAG 2 cut(s) 181, 437
BsaBI GATNNNNATC 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 654
Bse1I ACTGG 3 cut(s) 187, 225, 332
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 2 cut(s) 160, 416
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 5 cut(s) 221, 538, 644, 788, 815
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 347, 654
BseMII CTCAG 2 cut(s) 362, 684
BseNI ACTGG 3 cut(s) 187, 225, 332
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 3 cut(s) 12, 211, 636
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 347, 654
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 6 cut(s) 87, 173, 489, 505, 696, 752
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 363, 685
BspLI GGNNCC 2 cut(s) 216, 666
BspMAI CTGCAG 1 cut(s) 626
BspMI ACCTGC 1 cut(s) 226
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 214
BsrI ACTGG 3 cut(s) 187, 225, 332
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 6 cut(s) 87, 173, 489, 505, 696, 752
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 160, 416
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 133, 213
BstDEI CTNAG 3 cut(s) 371, 693, 793
BstF5I GGATG 5 cut(s) 221, 538, 644, 788, 815
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 6 cut(s) 90, 176, 492, 508, 699, 755
BstMBI GATC 6 cut(s) 87, 173, 489, 505, 696, 752
BstMWI GCNNNNNNNGC 3 cut(s) 137, 208, 337
BstNI CCWGG 2 cut(s) 160, 416
BstSCI CCNGG 2 cut(s) 158, 414
BstSFI CTRYAG 2 cut(s) 117, 622
BstV1I GCAGC 3 cut(s) 12, 211, 636
BstX2I RGATCY 3 cut(s) 173, 489, 752
BstYI RGATCY 3 cut(s) 173, 489, 752
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 5 cut(s) 221, 538, 644, 788, 815
BtsIMutI CAGTG 2 cut(s) 180, 339
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 133, 213
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 463, 479
CviAII CATG 1 cut(s) 103
CviQI GTAC 2 cut(s) 463, 479
DdeI CTNAG 3 cut(s) 371, 693, 793
DpnI GATC 6 cut(s) 89, 175, 491, 507, 698, 754
DpnII GATC 6 cut(s) 87, 173, 489, 505, 696, 752
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 158, 414
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 104, 119, 678
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 26, 200, 625
FokI GGATG 4 cut(s) 208, 545, 631, 775
Fsp4HI GCNGC 3 cut(s) 26, 200, 625
FspBI CTAG 2 cut(s) 473, 714
GlaI GCGC 1 cut(s) 44
GluI GCNGC 3 cut(s) 26, 200, 625
GsuI CTGGAG 2 cut(s) 181, 437
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 3 cut(s) 75, 316, 401
Hpy188I TCNGA 3 cut(s) 289, 444, 757
Hpy188III TCNNGA 4 cut(s) 67, 85, 530, 692
Hpy8I GTNNAC 3 cut(s) 75, 316, 401
HpyAV CCTTC 4 cut(s) 189, 258, 371, 416
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 221, 624
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 208, 337
HpyF3I CTNAG 3 cut(s) 371, 693, 793
HpySE526I ACGT 1 cut(s) 112
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 6 cut(s) 87, 173, 489, 505, 696, 752
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 3 cut(s) 12, 211, 636
LweI GCATC 2 cut(s) 230, 800
MaeI CTAG 2 cut(s) 473, 714
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 388, 451
MalI GATC 6 cut(s) 89, 175, 491, 507, 698, 754
MboI GATC 6 cut(s) 87, 173, 489, 505, 696, 752
MboII GAAGA 6 cut(s) 3, 32, 302, 393, 581, 694
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 3 cut(s) 173, 489, 752
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 3 cut(s) 126, 707, 800
MmeI TCCRAC 2 cut(s) 55, 642
MnlI CCTC 6 cut(s) 103, 156, 198, 255, 412, 427
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 1 cut(s) 780
MspR9I CCNGG 2 cut(s) 160, 416
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 2 cut(s) 160, 416
MwoI GCNNNNNNNGC 3 cut(s) 137, 208, 337
NdeII GATC 6 cut(s) 87, 173, 489, 505, 696, 752
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 216, 666
NmuCI GTSAC 2 cut(s) 388, 451
PaqCI CACCTGC 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 3 cut(s) 27, 201, 626
Psp6I CCWGG 2 cut(s) 158, 414
PspGI CCWGG 2 cut(s) 158, 414
PspN4I GGNNCC 2 cut(s) 216, 666
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 626
PstNI CAGNNNCTG 1 cut(s) 370
PsuI RGATCY 3 cut(s) 173, 489, 752
RsaI GTAC 2 cut(s) 464, 480
RsaNI GTAC 2 cut(s) 463, 479
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 780
SatI GCNGC 3 cut(s) 26, 200, 625
Sau3AI GATC 6 cut(s) 87, 173, 489, 505, 696, 752
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 2 cut(s) 464, 480
ScrFI CCNGG 2 cut(s) 160, 416
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 2 cut(s) 230, 800
SfcI CTRYAG 2 cut(s) 117, 622
SinI GGWCC 1 cut(s) 185
Sse9I AATT 3 cut(s) 126, 707, 800
SsiI CCGC 1 cut(s) 140
SspI AATATT 1 cut(s) 500
SspMI CTAG 2 cut(s) 473, 714
StyD4I CCNGG 2 cut(s) 158, 414
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 86
TasI AATT 3 cut(s) 126, 707, 800
TatI WGTACW 2 cut(s) 462, 478
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 780
Tru9I TTAA 1 cut(s) 780
TscAI CASTG 2 cut(s) 187, 339
TseFI GTSAC 2 cut(s) 388, 451
TseI GCWGC 3 cut(s) 25, 199, 624
Tsp45I GTSAC 2 cut(s) 388, 451
TspDTI ATGAA 3 cut(s) 119, 270, 552
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 2 cut(s) 187, 339
VpaK11BI GGWCC 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 2 cut(s) 473, 714
ZrmI AGTACT 2 cut(s) 464, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.