Rh2BG560200

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016180
Physical Location & Seq
Reverse (-)
77043863 .. 77047731
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG560200.1

Sequence Viewer

Length: 642 bp
ATGGCCGATTCTTCAAAAGAAGAGCTGCTCCAACTCATCAAGCGCTTCGGGGCTTATCTCTCTGTCAAGATGTCCACTTTATTCTCGATCTCCTCCCAAAACATGAATACACGTTCTATTGGGGCAATTGCTGGCTTTGCGGTAGCAATAGTTTTTACCTGGAGGCTTTTTAGATCTCCCACTGGACCTCAAAGAAGGCAGCCAAAACGGCAGGCACCTGCATCCGGTAGTTCTGGTGTCAATCCTCCTTCAAACTCAACGCTGACAACTACGGGAGTTTCATCATCAGAAGATACAAGAGCACAAAATGTTGTTGACGAGTTCTTTCAGCCAGTGAAGCCAACCTTGGGGCAGATAGTTAGACAGAAACTGAGTGAAGGAAGAAAGGTGACTTGTCGTTTACTTGGAGTAATCCTGGAGGAAAGTAGCCCAGAGGAACTTCAGAAACAAGTGACTGTGAAGTACTCGGTGCTAGAAGTACTCTTGGAGATCACAAAATATTGCGATCTGTATCTAATGGAAAGAGTTCTGGATGATGAAACTGAAAACAAGGTTCTATCGGCTTTGGAAGATGCTGGGGTTTTCACATCTGGGGGTTTGGTCAAAGACAAGGTAACTTTATGTGTTGATAGCATTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.4

Weight (kDa)

7.64

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_Pex22 PF22978 118 - 208 3.4e-19 Peroxisome biogenesis protein 22, Haloacid dehydrogenase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21865
fragaria_vesca FvH4_6g43550 FvH4_6g43550
malus_domestica MD09G1105000.v1.1 MD17G1092700.v1.1
prunus_persica Prupe.3G220500_v2.0.a1 Prupe.3G220500_v2.0.a1
pyrus_communis pycom09g02810 pycom17g09030
rosa_chinensis RchiOBHm_Chr2g0160081
rosa_laevigata RLG00000021196
rosa_rugosa Rorug02G0480900
rosa_samantha Rh2AG546800 Rh2BG560200
rosa_wichuraiana Rw2G045220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
Acc36I ACCTGC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 214
AciI CCGC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 2 cut(s) 464, 480
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 224, 347
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 2 cut(s) 15, 252
AjnI CCWGG 2 cut(s) 158, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 304
AlwNI CAGNNNCTG 1 cut(s) 370
Aor51HI AGCGCT 1 cut(s) 44
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 25, 199
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 12, 211
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 160, 416
BfaI CTAG 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 208
BglII AGATCT 1 cut(s) 173
BisI GCNGC 2 cut(s) 26, 200
BlsI GCNGC 2 cut(s) 27, 201
BmcAI AGTACT 2 cut(s) 464, 480
Bme1390I CCNGG 2 cut(s) 160, 416
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 160, 416
BmsI GCATC 2 cut(s) 230, 562
BpmI CTGGAG 2 cut(s) 181, 437
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 347
Bse1I ACTGG 2 cut(s) 187, 332
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 2 cut(s) 160, 416
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 221, 538
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 224, 347
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 187, 332
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 12, 211
BseYI CCCAGC 1 cut(s) 575
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 224, 347
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 4 cut(s) 87, 173, 489, 505
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 226
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 214
BsrI ACTGG 2 cut(s) 187, 332
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 4 cut(s) 87, 173, 489, 505
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 160, 416
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 133, 213
BstDEI CTNAG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 221, 538
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 4 cut(s) 90, 176, 492, 508
BstMBI GATC 4 cut(s) 87, 173, 489, 505
BstMWI GCNNNNNNNGC 3 cut(s) 137, 208, 337
BstNI CCWGG 2 cut(s) 160, 416
BstSCI CCNGG 2 cut(s) 158, 414
BstV1I GCAGC 2 cut(s) 12, 211
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 221, 538
BtsIMutI CAGTG 2 cut(s) 180, 339
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 133, 213
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 463, 479
CviAII CATG 1 cut(s) 103
CviQI GTAC 2 cut(s) 463, 479
DdeI CTNAG 1 cut(s) 371
DpnI GATC 4 cut(s) 89, 175, 491, 507
DpnII GATC 4 cut(s) 87, 173, 489, 505
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 158, 414
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 1 cut(s) 106
FaiI YATR 4 cut(s) 104, 622, 638, 640
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 26, 200
FokI GGATG 2 cut(s) 208, 545
Fsp4HI GCNGC 2 cut(s) 26, 200
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 44
GluI GCNGC 2 cut(s) 26, 200
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 2 cut(s) 181, 437
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 225
HhaI GCGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 3 cut(s) 75, 316, 401
Hpy188I TCNGA 2 cut(s) 289, 444
Hpy188III TCNNGA 3 cut(s) 67, 85, 530
Hpy8I GTNNAC 3 cut(s) 75, 316, 401
HpyAV CCTTC 3 cut(s) 189, 258, 371
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 208, 337
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 4 cut(s) 87, 173, 489, 505
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 2 cut(s) 12, 211
LweI GCATC 2 cut(s) 230, 562
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 3 cut(s) 388, 451, 613
MalI GATC 4 cut(s) 89, 175, 491, 507
MboI GATC 4 cut(s) 87, 173, 489, 505
MboII GAAGA 5 cut(s) 3, 32, 302, 393, 581
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 6 cut(s) 103, 156, 198, 255, 412, 427
MroXI GAANNNNTTC 1 cut(s) 525
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 160, 416
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 2 cut(s) 160, 416
MwoI GCNNNNNNNGC 3 cut(s) 137, 208, 337
NdeII GATC 4 cut(s) 87, 173, 489, 505
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 2 cut(s) 388, 451
PaqCI CACCTGC 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 2 cut(s) 27, 201
Psp6I CCWGG 2 cut(s) 158, 414
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 2 cut(s) 158, 414
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 2 cut(s) 464, 480
RsaNI GTAC 2 cut(s) 463, 479
SapI GCTCTTC 1 cut(s) 15
SatI GCNGC 2 cut(s) 26, 200
Sau3AI GATC 4 cut(s) 87, 173, 489, 505
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 2 cut(s) 464, 480
ScrFI CCNGG 2 cut(s) 160, 416
SduI GDGCHC 1 cut(s) 304
SetI ASST 9 cut(s) 27, 115, 161, 190, 220, 347, 390, 555, 615
SfaNI GCATC 2 cut(s) 230, 562
SinI GGWCC 1 cut(s) 185
Sse9I AATT 1 cut(s) 126
SsiI CCGC 1 cut(s) 140
SspI AATATT 1 cut(s) 500
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 158, 414
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 126
TatI WGTACW 2 cut(s) 462, 478
TfiI GAWTC 1 cut(s) 8
TscAI CASTG 2 cut(s) 187, 339
TseFI GTSAC 2 cut(s) 388, 451
TseI GCWGC 2 cut(s) 25, 199
Tsp45I GTSAC 2 cut(s) 388, 451
TspDTI ATGAA 3 cut(s) 119, 270, 552
TspRI CASTG 2 cut(s) 187, 339
VpaK11BI GGWCC 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 1 cut(s) 473
ZrmI AGTACT 2 cut(s) 464, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.