Prupe.3G220500_v2.0.a1

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016180
Physical Location & Seq
Reverse (-)
22139446 .. 22143208
3763 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G220500.1

Sequence Viewer

Length: 819 bp
ATGACCGAGTCTTCGAAAGAAGAGCTGCTTCAGCTCATCAAGCGCTTCGGGGCTTATCTCACTGTGAAGATGTCTAGTATCTTCCCGATCTCCCTCCACAACCTGAATGCACGTTCTATTGGGGCTATCGCGGGCTTTGCCGTTGCAATAGTTTTCACCTGGAGGCTGCTGAGATCACCCAGTGGACCTCAAAGAAGGCAACCAAAGAGACAGGCACCTGCATCCAGTAGTTCTGGCATCAGTTCACAGTCAAATGCAACATTGACAACTTCAGGAGTTTCATCTTCAGAGGACACAAGAGCACAAAATGTTGTTGATGAGTTCTTTCAGCCAGTAAAGCCAACTTTGGGGCAAATAGTTCGGCAGAAACTGAGTGAAGGAAGAAAGGTAACTTGTCGTTTACTTGGAGTAGTCCTGGAGGAAAGTACCCCAGAAGAACTTCAGAAACAAGTGACTGTGAGGTACTCAGTGCTGGAAGTACTCTTGGAGATCACAAAATTTTGTGATTTGTATCTCATGGAAAGAGTTCTCGACGATGAAACTGAAAAAAAGGTTCTACTGGCTTTGGAAGATGCTGGGGTTTTCACATCTGGGGGTTTGGTGAAAGAAAAGGTTCTCTTCTGTAGCACAGAGAATGGACGAACATCTTTTGTTCGCCAATTGGAACCAGATTGGCATGTCGACACAAATCCTGACATCATCTTTCAATTATCTAGGTTTATCAAGTATCAGCTTCACATCTCTCCTACCAGAACTGAACGGGCTGCTTCTAATGTGTTCAACTCCCCATCCTTGGAACAGTTCTTTGGATGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.39

Weight (kDa)

8.32

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21865
fragaria_vesca FvH4_6g43550 FvH4_6g43550
malus_domestica MD09G1105000.v1.1 MD17G1092700.v1.1
prunus_persica Prupe.3G220500_v2.0.a1 Prupe.3G220500_v2.0.a1
pyrus_communis pycom09g02810 pycom17g09030
rosa_chinensis RchiOBHm_Chr2g0160081
rosa_laevigata RLG00000021196
rosa_rugosa Rorug02G0480900
rosa_samantha Rh2AG546800 Rh2BG560200
rosa_wichuraiana Rw2G045220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
Acc36I ACCTGC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 214
AccI GTMKAC 1 cut(s) 681
AccII CGCG 1 cut(s) 131
AciI CCGC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 4 cut(s) 14, 255, 270, 425
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 3 cut(s) 427, 464, 480
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 347, 793
AgsI TTSAA 2 cut(s) 707, 781
AjnI CCWGG 2 cut(s) 158, 414
AjuI GAANNNNNNNTTGG 1 cut(s) 789
AluBI AGCT 3 cut(s) 25, 34, 733
AluI AGCT 3 cut(s) 25, 34, 733
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 202
AlwNI CAGNNNCTG 1 cut(s) 370
Aor51HI AGCGCT 1 cut(s) 44
ApeKI GCWGC 3 cut(s) 25, 166, 764
ApoI RAATTY 1 cut(s) 497
ArsI GACNNNNNNTTYG 1 cut(s) 27
Asp700I GAANNNNTTC 3 cut(s) 438, 525, 612
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 148, 168, 613
AsuII TTCGAA 1 cut(s) 14
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 3
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 12, 153, 751
BccI CCATC 1 cut(s) 796
BceAI ACGGC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 2 cut(s) 160, 416
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 2 cut(s) 75, 714
BfmI CTRYAG 1 cut(s) 622
BfoI RGCGCY 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 3 cut(s) 26, 167, 765
BlsI GCNGC 3 cut(s) 27, 168, 766
BmcAI AGTACT 1 cut(s) 480
Bme1390I CCNGG 2 cut(s) 160, 416
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 216, 666
BmrFI CCNGG 2 cut(s) 160, 416
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 230, 246, 562
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 3
BpmI CTGGAG 2 cut(s) 181, 437
Bpu14I TTCGAA 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 792
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 793
Bse1I ACTGG 4 cut(s) 180, 225, 332, 564
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 2 cut(s) 160, 416
BseDI CCNNGG 1 cut(s) 792
BseGI GGATG 3 cut(s) 221, 788, 815
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 347, 793
BseMII CTCAG 3 cut(s) 161, 362, 480
BseNI ACTGG 4 cut(s) 180, 225, 332, 564
BseXI GCAGC 3 cut(s) 12, 153, 751
BseYI CCCAGC 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 347, 793
BsmAI GTCTC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 3 cut(s) 87, 173, 489
BspACI CCGC 1 cut(s) 131
BspCNI CTCAG 3 cut(s) 162, 363, 479
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 216, 666
BspMI ACCTGC 1 cut(s) 226
BspQI GCTCTTC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 214
BsrI ACTGG 4 cut(s) 180, 225, 332, 564
BssECI CCNNGG 1 cut(s) 792
BssMI GATC 3 cut(s) 87, 173, 489
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 2 cut(s) 160, 416
Bst4CI ACNGT 4 cut(s) 64, 249, 457, 801
Bst6I CTCTTC 2 cut(s) 15, 623
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 170, 371, 466
BstF5I GGATG 3 cut(s) 221, 788, 815
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 3 cut(s) 90, 176, 492
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 3 cut(s) 87, 173, 489
BstMWI GCNNNNNNNGC 4 cut(s) 31, 40, 137, 337
BstNI CCWGG 2 cut(s) 160, 416
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 2 cut(s) 158, 414
BstSFI CTRYAG 1 cut(s) 622
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 3 cut(s) 12, 153, 751
BstV2I GAAGAC 1 cut(s) 3
BtsCI GGATG 3 cut(s) 221, 788, 815
BtsIMutI CAGTG 3 cut(s) 60, 187, 474
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 3 cut(s) 426, 463, 479
CviAII CATG 2 cut(s) 517, 677
CviQI GTAC 3 cut(s) 426, 463, 479
DdeI CTNAG 3 cut(s) 170, 371, 466
DpnI GATC 3 cut(s) 89, 175, 491
DpnII GATC 3 cut(s) 87, 173, 489
DraIII CACNNNGTG 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 15, 623
EarI CTCTTC 2 cut(s) 15, 623
Eco130I CCWWGG 1 cut(s) 792
Eco47I GGWCC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 44
Eco57I CTGAAG 4 cut(s) 14, 255, 270, 425
EcoRII CCWGG 2 cut(s) 158, 414
EcoT14I CCWWGG 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 2 cut(s) 520, 680
FaiI YATR 2 cut(s) 518, 678
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 602, 634
FatI CATG 2 cut(s) 516, 676
FauI CCCGC 1 cut(s) 124
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 3 cut(s) 26, 167, 765
FokI GGATG 2 cut(s) 208, 775
Fsp4HI GCNGC 3 cut(s) 26, 167, 765
FspBI CTAG 2 cut(s) 75, 714
GlaI GCGC 1 cut(s) 44
GluI GCNGC 3 cut(s) 26, 167, 765
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 2 cut(s) 181, 437
HaeII RGCGCY 1 cut(s) 46
HhaI GCGC 1 cut(s) 45
Hin1II CATG 2 cut(s) 520, 680
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HinfI GANTC 1 cut(s) 8
HphI GGTGA 3 cut(s) 148, 168, 613
Hpy166II GTNNAC 4 cut(s) 185, 245, 401, 682
Hpy188I TCNGA 2 cut(s) 289, 444
Hpy188III TCNNGA 4 cut(s) 85, 273, 530, 692
Hpy8I GTNNAC 4 cut(s) 185, 245, 401, 682
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 189, 371
HpyCH4III ACNGT 4 cut(s) 64, 249, 457, 801
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 110, 146, 221, 257
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 40, 137, 337
HpyF3I CTNAG 3 cut(s) 170, 371, 466
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 2 cut(s) 520, 680
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 87, 173, 489
LguI GCTCTTC 1 cut(s) 15
Lsp1109I GCAGC 3 cut(s) 12, 153, 751
LweI GCATC 3 cut(s) 230, 246, 562
MaeI CTAG 2 cut(s) 75, 714
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 388, 451
MalI GATC 3 cut(s) 89, 175, 491
MboI GATC 3 cut(s) 87, 173, 489
MboII GAAGA 9 cut(s) 3, 32, 73, 79, 276, 393, 446, 581, 610
MfeI CAATTG 1 cut(s) 659
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 3 cut(s) 497, 659, 707
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 6 cut(s) 104, 156, 198, 283, 412, 453
MroXI GAANNNNTTC 3 cut(s) 438, 525, 612
MspR9I CCNGG 2 cut(s) 160, 416
MunI CAATTG 1 cut(s) 659
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 2 cut(s) 160, 416
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 31, 40, 137, 337
NdeII GATC 3 cut(s) 87, 173, 489
NlaIII CATG 2 cut(s) 520, 680
NlaIV GGNNCC 2 cut(s) 216, 666
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 1 cut(s) 680
NspV TTCGAA 1 cut(s) 14
PaqCI CACCTGC 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 15
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 3 cut(s) 438, 525, 612
PflFI GACNNNGTC 1 cut(s) 7
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 3 cut(s) 27, 168, 766
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 158, 414
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 2 cut(s) 158, 414
PspN4I GGNNCC 2 cut(s) 216, 666
PspPI GGNCC 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 370
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 3 cut(s) 427, 464, 480
RsaNI GTAC 3 cut(s) 426, 463, 479
SalI GTCGAC 1 cut(s) 680
SapI GCTCTTC 1 cut(s) 15
SatI GCNGC 3 cut(s) 26, 167, 765
Sau3AI GATC 3 cut(s) 87, 173, 489
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 480
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 160, 416
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 3 cut(s) 230, 246, 562
SfcI CTRYAG 1 cut(s) 622
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 1 cut(s) 185
Sse9I AATT 3 cut(s) 497, 659, 707
SsiI CCGC 1 cut(s) 131
SspMI CTAG 2 cut(s) 75, 714
StyD4I CCNGG 2 cut(s) 158, 414
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 4 cut(s) 64, 249, 457, 801
TaiI ACGT 1 cut(s) 115
TaqI TCGA 3 cut(s) 14, 531, 681
TaqII GACCGA 1 cut(s) 20
TasI AATT 3 cut(s) 497, 659, 707
TatI WGTACW 1 cut(s) 478
TscAI CASTG 3 cut(s) 67, 187, 474
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 3 cut(s) 25, 166, 764
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 2 cut(s) 270, 552
TspRI CASTG 3 cut(s) 67, 187, 474
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 497
XceI RCATGY 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 681
XmnI GAANNNNTTC 3 cut(s) 438, 525, 612
XspI CTAG 2 cut(s) 75, 714
ZrmI AGTACT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.