Rorug02G0480900

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016180
Physical Location & Seq
Forward (+)
61139239 .. 61140628
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0480900.1

Sequence Viewer

Length: 636 bp
ATGGCCTCAGAGAGACAAGAGCCCACCGCAAGAGAATTCGTCAAGGGAAAGTGGACACCGCGAGAAGATGAGAAACTAACCGAGGCTATTGCAGTTCATGGCGCAAAGAAGTGGAACTCATTAGCGTCTAAAGCAGGGCTGAATCGGAATGGCAAGAGTTGCAGGCTGAGATGGGTGAACTATCTGAGACCCAACCTCAAGAGAGGCCACATGTCTGACCAGGAAGATGACTTGATTATTAGGCTGCATAAGCTTCTTGGAAATAGGTGGTCTTTGATTGCGGGAAGATTACCGGGTCGAACAGACAATGAGATAAAGAACTACTGGAATACTCATTTGAGCAAGAAAATTAACCAGGAAGAGAAGCAAAGTAGCAATGGAGCTAATTCGACGATACAAATTCCCACAGTTGACGAGAAACCAAGTGTAGCAGATGATGATCGGAAGGTCCATGTAGAAATGAAGCAAGAGTGCTTATCATCAGGAGTGGGTACAAGTGCGGCTCTAATAAAGAAAGAGGTGATGATCGATCCTGAGGATTACTCCAACACTAACACTAACAATATTGATGTTGATGACTTCTTTAATCTCCTCGATGAAGAACCTTTGAGTTGGGAGGTTCCGCAAATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.05

Weight (kDa)

6.24

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 4.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 76 7.8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 113 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 120 3.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21865
fragaria_vesca FvH4_6g43550 FvH4_6g43550
malus_domestica MD09G1105000.v1.1 MD17G1092700.v1.1
prunus_persica Prupe.3G220500_v2.0.a1 Prupe.3G220500_v2.0.a1
pyrus_communis pycom09g02810 pycom17g09030
rosa_chinensis RchiOBHm_Chr2g0160081
rosa_laevigata RLG00000021196
rosa_rugosa Rorug02G0480900
rosa_samantha Rh2AG546800 Rh2BG560200
rosa_wichuraiana Rw2G045220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 5 cut(s) 27, 59, 281, 500, 623
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 3 cut(s) 35, 399, 627
AfaI GTAC 1 cut(s) 493
AflIII ACRYGT 1 cut(s) 210
AjnI CCWGG 2 cut(s) 219, 354
AluBI AGCT 2 cut(s) 253, 383
AluI AGCT 2 cut(s) 253, 383
Alw26I GTCTC 2 cut(s) 7, 181
AlwI GGATC 1 cut(s) 524
AoxI GGCC 2 cut(s) 3, 205
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 3 cut(s) 35, 399, 627
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 187, 532
AvaII GGWCC 1 cut(s) 448
AxyI CCTNAGG 1 cut(s) 534
BanII GRGCYC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 2 cut(s) 221, 356
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 7, 181
BisI GCNGC 2 cut(s) 245, 501
BlsI GCNGC 2 cut(s) 246, 502
Bme1390I CCNGG 3 cut(s) 221, 294, 356
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 3 cut(s) 221, 294, 356
BplI GAGNNNNNCTC 2 cut(s) 527, 559
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 294
Bsa29I ATCGAT 1 cut(s) 528
BsaBI GATNNNNATC 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 329
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 382
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 2 cut(s) 221, 356
BseCI ATCGAT 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 438
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 4 cut(s) 21, 158, 176, 525
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 5, 207
BshVI ATCGAT 1 cut(s) 528
BsiSI CCGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 7, 181
BsnI GGCC 2 cut(s) 5, 207
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 439, 525, 529
BspACI CCGC 5 cut(s) 27, 59, 281, 500, 623
BspANI GGCC 2 cut(s) 5, 207
BspCNI CTCAG 4 cut(s) 20, 159, 177, 526
BspDI ATCGAT 1 cut(s) 528
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 621
BspPI GGATC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 382
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 439, 525, 529
Bst2UI CCWGG 2 cut(s) 221, 356
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 4 cut(s) 7, 167, 185, 534
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 442, 528, 532
BstMAI GTCTC 2 cut(s) 7, 181
BstMBI GATC 3 cut(s) 439, 525, 529
BstMWI GCNNNNNNNGC 3 cut(s) 131, 159, 250
BstNI CCWGG 2 cut(s) 221, 356
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 3 cut(s) 219, 292, 354
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 528
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 2 cut(s) 5, 207
BsuTUI ATCGAT 1 cut(s) 528
Cac8I GCNNGC 1 cut(s) 164
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 448
ClaI ATCGAT 1 cut(s) 528
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 492
CviAII CATG 3 cut(s) 98, 211, 452
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 4 cut(s) 7, 167, 185, 534
DpnI GATC 3 cut(s) 441, 527, 531
DpnII GATC 3 cut(s) 439, 525, 529
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 448
Eco81I CCTNAGG 1 cut(s) 534
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 219, 354
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 3 cut(s) 101, 214, 455
FaiI YATR 4 cut(s) 99, 212, 249, 453
FatI CATG 3 cut(s) 97, 210, 451
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 245, 501
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 245, 501
GlaI GCGC 1 cut(s) 103
GluI GCNGC 2 cut(s) 245, 501
HaeIII GGCC 2 cut(s) 5, 207
HapII CCGG 1 cut(s) 293
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 104
Hin1II CATG 3 cut(s) 101, 214, 455
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 187, 532
Hpy166II GTNNAC 3 cut(s) 54, 178, 412
Hpy188I TCNGA 5 cut(s) 10, 147, 186, 217, 444
Hpy188III TCNNGA 3 cut(s) 199, 483, 533
Hpy8I GTNNAC 3 cut(s) 54, 178, 412
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 3 cut(s) 92, 162, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 159, 250
HpyF3I CTNAG 4 cut(s) 7, 167, 185, 534
Hsp92II CATG 3 cut(s) 101, 214, 455
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 439, 525, 529
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 1 cut(s) 231
MalI GATC 3 cut(s) 441, 527, 531
MboI GATC 3 cut(s) 439, 525, 529
MboII GAAGA 5 cut(s) 77, 236, 297, 371, 611
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 5 cut(s) 35, 348, 385, 399, 627
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 8 cut(s) 16, 76, 197, 206, 511, 529, 602, 610
MseI TTAA 2 cut(s) 351, 585
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 3 cut(s) 221, 294, 356
MvaI CCWGG 2 cut(s) 221, 356
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 3 cut(s) 131, 159, 250
NciI CCSGG 1 cut(s) 294
NdeII GATC 3 cut(s) 439, 525, 529
NlaIII CATG 3 cut(s) 101, 214, 455
NlaIV GGNNCC 1 cut(s) 621
NspI RCATGY 1 cut(s) 214
PciI ACATGT 1 cut(s) 210
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 246, 502
PscI ACATGT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 219, 354
PspGI CCWGG 2 cut(s) 219, 354
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 448
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SaqAI TTAA 2 cut(s) 351, 585
SatI GCNGC 2 cut(s) 245, 501
Sau3AI GATC 3 cut(s) 439, 525, 529
Sau96I GGNCC 1 cut(s) 448
ScrFI CCNGG 3 cut(s) 221, 294, 356
SduI GDGCHC 1 cut(s) 24
SetI ASST 8 cut(s) 198, 255, 269, 385, 450, 522, 607, 621
SinI GGWCC 1 cut(s) 448
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 5 cut(s) 35, 348, 385, 399, 627
SsiI CCGC 5 cut(s) 27, 59, 281, 500, 623
SspI AATATT 1 cut(s) 565
StyD4I CCNGG 3 cut(s) 219, 292, 354
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 4 cut(s) 298, 389, 528, 594
TasI AATT 5 cut(s) 35, 348, 385, 399, 627
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 351, 585
Tru9I TTAA 2 cut(s) 351, 585
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 3 cut(s) 86, 476, 612
VpaK11BI GGWCC 1 cut(s) 448
XapI RAATTY 3 cut(s) 35, 399, 627
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.