MD17G1092700.v1.1

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016180
Physical Location & Seq
Forward (+)
7777832 .. 7781161
3330 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1092700.v1.1.491

Sequence Viewer

Length: 819 bp
ATGGCCGAGTCTTCGAAGGACGAGCTGCTTCAGCTCATCAAGCGCTTCGGGGCTTATCTCACTGTCAAGATGTCCAGTCTCTTCCCGATCTCCCTCCACAATATGAATTCACGTTCTATTGGGGCCATTGCGGGATTTGCTGTTGCAATAGTTTTCACATGGAGGCTGCTTAGATCACCCAGTGGACCACAAAGAAGGCAACCAAAGCGGCAGGCACCTGCATCGAGTAGTTCTGGCATCAGTTCAAATTCGAATGCAACATTGACAACTACGGGAGTTTCACCTTCACAGGACTCAAGAGCCCAAAACGTTGTTGATGAATTTTTTCAGCCTGTAAAGCCTACTTTGGGGCAAATAGTCCGGCAGAAACTGAGTGAAGGAAGAAAGGTAACTTGTCGTTTACTCGGAGTAGTCCTTGAGGAAAGTACCCCAGAGGAACTTCAGAAACAAGTGACTGTGAGGTACTCAGTGCTGGAAGTACTCTTGGAGATCACAAAATTTTGTGATTTGTATCTCATGGAAAGAGTTCTCGATGATGAAAGTGAAAAAAAGGTTCTACTGGCTTTGGAAGATGCTGGGATTTTTACATCTGGAGGTTTGGTCAAAGACAAGGTTCTCTTCTGTAGCACAGAGAATGGACGAACATCTTTTGTTCGGCAATTGGAACCAGATTGGCATATCGACACAAATCCTGACATCATATTTCAATTATCTAGGTTCATCAAGTATCAGCTTCACATCTCTCCTACCAGAGCAGAACGACCTGCTTCTAATGTGTTCAACGCCCCATCCTTGGAACAGTTCTTTGGATGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.36

Weight (kDa)

8.65

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_Pex22 PF22978 118 - 269 2.6e-46 Peroxisome biogenesis protein 22, Haloacid dehydrogenase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21865
fragaria_vesca FvH4_6g43550 FvH4_6g43550
malus_domestica MD09G1105000.v1.1 MD17G1092700.v1.1
prunus_persica Prupe.3G220500_v2.0.a1 Prupe.3G220500_v2.0.a1
pyrus_communis pycom09g02810 pycom17g09030
rosa_chinensis RchiOBHm_Chr2g0160081
rosa_laevigata RLG00000021196
rosa_rugosa Rorug02G0480900
rosa_samantha Rh2AG546800 Rh2BG560200
rosa_wichuraiana Rw2G045220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
Acc36I ACCTGC 2 cut(s) 226, 772
AccB1I GGYRCC 1 cut(s) 214
AciI CCGC 2 cut(s) 131, 208
AclI AACGTT 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 106, 247, 320, 497
AcuI CTGAAG 2 cut(s) 14, 425
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 3 cut(s) 427, 464, 480
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 347, 793
AgsI TTSAA 3 cut(s) 246, 707, 781
AjuI GAANNNNNNNTTGG 1 cut(s) 789
AluBI AGCT 3 cut(s) 25, 34, 733
AluI AGCT 3 cut(s) 25, 34, 733
Alw26I GTCTC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 370
Aor51HI AGCGCT 1 cut(s) 44
AoxI GGCC 2 cut(s) 3, 123
ApeKI GCWGC 2 cut(s) 25, 166
ApoI RAATTY 4 cut(s) 106, 247, 320, 497
Asp700I GAANNNNTTC 2 cut(s) 324, 525
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 123, 185
AsuHPI GGTGA 2 cut(s) 168, 273
AsuII TTCGAA 2 cut(s) 14, 251
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 3
BbvI GCAGC 2 cut(s) 12, 153
BccI CCATC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 1 cut(s) 622
BfoI RGCGCY 1 cut(s) 46
BfuAI ACCTGC 2 cut(s) 226, 772
BisI GCNGC 3 cut(s) 26, 167, 209
BlsI GCNGC 3 cut(s) 27, 168, 210
BmcAI AGTACT 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 123, 185
BmiI GGNNCC 3 cut(s) 124, 216, 666
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 230, 246, 562
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 3
BpmI CTGGAG 1 cut(s) 612
Bpu14I TTCGAA 2 cut(s) 14, 251
BpuEI CTTGAG 2 cut(s) 280, 437
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 792
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 793
Bse1I ACTGG 3 cut(s) 75, 180, 564
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 792
BseGI GGATG 2 cut(s) 788, 815
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 347, 793
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 2 cut(s) 362, 480
BseNI ACTGG 3 cut(s) 75, 180, 564
BseXI GCAGC 2 cut(s) 12, 153
BseYI CCCAGC 1 cut(s) 575
BshFI GGCC 2 cut(s) 5, 125
BshNI GGYRCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 361
BslI CCNNNNNNNGG 2 cut(s) 347, 793
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 2 cut(s) 5, 125
Bsp119I TTCGAA 2 cut(s) 14, 251
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 3 cut(s) 87, 173, 489
BspACI CCGC 2 cut(s) 131, 208
BspANI GGCC 2 cut(s) 5, 125
BspCNI CTCAG 2 cut(s) 363, 479
BspLI GGNNCC 3 cut(s) 124, 216, 666
BspMI ACCTGC 2 cut(s) 226, 772
BspT104I TTCGAA 2 cut(s) 14, 251
BspT107I GGYRCC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 3 cut(s) 75, 180, 564
BssECI CCNNGG 1 cut(s) 792
BssMI GATC 3 cut(s) 87, 173, 489
BssT1I CCWWGG 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 64, 457, 801
Bst6I CTCTTC 2 cut(s) 86, 623
BstBI TTCGAA 2 cut(s) 14, 251
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 170, 371, 466
BstF5I GGATG 2 cut(s) 788, 815
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 3 cut(s) 90, 176, 492
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 3 cut(s) 87, 173, 489
BstMWI GCNNNNNNNGC 5 cut(s) 31, 40, 137, 205, 337
BstSFI CTRYAG 1 cut(s) 622
BstV1I GCAGC 2 cut(s) 12, 153
BstV2I GAAGAC 1 cut(s) 3
BsuRI GGCC 2 cut(s) 5, 125
BtsCI GGATG 2 cut(s) 788, 815
BtsIMutI CAGTG 3 cut(s) 60, 187, 474
BveI ACCTGC 2 cut(s) 226, 772
Cac8I GCNNGC 1 cut(s) 213
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 123, 185
Csp6I GTAC 3 cut(s) 426, 463, 479
CviAII CATG 2 cut(s) 159, 517
CviQI GTAC 3 cut(s) 426, 463, 479
DdeI CTNAG 3 cut(s) 170, 371, 466
DpnI GATC 3 cut(s) 89, 175, 491
DpnII GATC 3 cut(s) 87, 173, 489
DraIII CACNNNGTG 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 86, 623
EarI CTCTTC 2 cut(s) 86, 623
Eco130I CCWWGG 1 cut(s) 792
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 14, 425
EcoRI GAATTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 2 cut(s) 162, 520
FaiI YATR 5 cut(s) 104, 160, 518, 678, 701
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FatI CATG 2 cut(s) 158, 516
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 26, 167, 209
FokI GGATG 1 cut(s) 775
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 3 cut(s) 26, 167, 209
FspBI CTAG 1 cut(s) 714
GlaI GCGC 1 cut(s) 44
GluI GCNGC 3 cut(s) 26, 167, 209
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 2 cut(s) 5, 125
HapII CCGG 1 cut(s) 361
HhaI GCGC 1 cut(s) 45
Hin1II CATG 2 cut(s) 162, 520
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 2 cut(s) 8, 293
HpaII CCGG 1 cut(s) 361
HphI GGTGA 2 cut(s) 168, 273
Hpy166II GTNNAC 2 cut(s) 185, 401
Hpy188I TCNGA 2 cut(s) 407, 444
Hpy188III TCNNGA 6 cut(s) 67, 85, 297, 530, 591, 692
Hpy8I GTNNAC 2 cut(s) 185, 401
HpyAV CCTTC 4 cut(s) 10, 189, 294, 371
HpyCH4III ACNGT 3 cut(s) 64, 457, 801
HpyCH4IV ACGT 2 cut(s) 112, 309
HpyCH4V TGCA 3 cut(s) 146, 221, 257
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 40, 137, 205, 337
HpyF3I CTNAG 3 cut(s) 170, 371, 466
HpySE526I ACGT 2 cut(s) 112, 309
Hsp92II CATG 2 cut(s) 162, 520
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 87, 173, 489
Lsp1109I GCAGC 2 cut(s) 12, 153
LweI GCATC 3 cut(s) 230, 246, 562
MaeI CTAG 1 cut(s) 714
MaeII ACGT 2 cut(s) 112, 309
MaeIII GTNAC 2 cut(s) 388, 451
MalI GATC 3 cut(s) 89, 175, 491
MboI GATC 3 cut(s) 87, 173, 489
MboII GAAGA 5 cut(s) 3, 73, 393, 581, 610
MfeI CAATTG 1 cut(s) 659
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 6 cut(s) 106, 247, 320, 497, 659, 707
MlyI GAGTC 2 cut(s) 17, 287
MnlI CCTC 6 cut(s) 104, 156, 412, 427, 453, 587
MroXI GAANNNNTTC 2 cut(s) 324, 525
MspI CCGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 659
Mva1269I GAATGC 1 cut(s) 259
MwoI GCNNNNNNNGC 5 cut(s) 31, 40, 137, 205, 337
NdeII GATC 3 cut(s) 87, 173, 489
NlaIII CATG 2 cut(s) 162, 520
NlaIV GGNNCC 3 cut(s) 124, 216, 666
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 451
NspV TTCGAA 2 cut(s) 14, 251
PaqCI CACCTGC 1 cut(s) 226
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 2 cut(s) 324, 525
PkrI GCNGC 3 cut(s) 27, 168, 210
PleI GAGTC 2 cut(s) 16, 287
PpsI GAGTC 2 cut(s) 16, 287
Psp1406I AACGTT 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 575
PspN4I GGNNCC 3 cut(s) 124, 216, 666
PspPI GGNCC 2 cut(s) 123, 185
PstNI CAGNNNCTG 1 cut(s) 370
RsaI GTAC 3 cut(s) 427, 464, 480
RsaNI GTAC 3 cut(s) 426, 463, 479
SatI GCNGC 3 cut(s) 26, 167, 209
Sau3AI GATC 3 cut(s) 87, 173, 489
Sau96I GGNCC 2 cut(s) 123, 185
ScaI AGTACT 1 cut(s) 480
SchI GAGTC 2 cut(s) 17, 287
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 3 cut(s) 230, 246, 562
SfcI CTRYAG 1 cut(s) 622
SfuI TTCGAA 2 cut(s) 14, 251
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 295, 416
SmoI CTYRAG 2 cut(s) 295, 416
Sse9I AATT 6 cut(s) 106, 247, 320, 497, 659, 707
SsiI CCGC 2 cut(s) 131, 208
SspMI CTAG 1 cut(s) 714
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 64, 457, 801
TaiI ACGT 2 cut(s) 115, 312
TaqI TCGA 5 cut(s) 14, 224, 251, 531, 681
TasI AATT 6 cut(s) 106, 247, 320, 497, 659, 707
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 211
TscAI CASTG 3 cut(s) 67, 187, 474
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 25, 166
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 4 cut(s) 119, 333, 552, 709
TspRI CASTG 3 cut(s) 67, 187, 474
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 4 cut(s) 106, 247, 320, 497
XmnI GAANNNNTTC 2 cut(s) 324, 525
XspI CTAG 1 cut(s) 714
ZrmI AGTACT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.