FvH4_6g43890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015675
Physical Location & Seq
Forward (+)
33916962 .. 33917807
846 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43890.t1

Sequence Viewer

Length: 372 bp
ATGGCTAGAGTTGGTCTGGTTTGGCTAGTTCTTCTAGCTGGGATCCTTGCGGTGCAGGCAACGGCTCAAAAATCTGAGCTGAACCCAACTGAGGTTAAGCCCAAGAATGAGGTTCTAGCAGCACATTCAGATTCCGATTCAGGTTCAGGTTCAGATCAGAGTAGTGTTTCTGTTGCTGAAGAGCCATCTCATAGTATGGAGGAGTCTCAAGTGGCTGAAGGTCCATCTATCAGAAAGTTGGGGTCATCAAAGCATCACCAAGATAAGTCTGTTGCTGGTGGAGGTGTCATTATTGGTGGGCTTGTCACTGCCATTTTTGCAGCTGTGTTTTGTTACATCAGGGTCACCAGGAAAAGGGGTGGTGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

12.82

Weight (kDa)

6.9

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g43890
malus_domestica MD09G1102100.v1.1 MD09G1127500.v1.1
prunus_persica Prupe.3G223500_v2.0.a1 Prupe.3G223500_v2.0.a1
pyrus_communis pycom09g02570 pycom17g08680
rosa_chinensis RchiOBHm_Chr2g0160641
rosa_laevigata RLG00000021232
rosa_multiflora Rmu_sc0000674.1_g000030
rosa_roxburghii Rroxscaffold_2G00089530
rosa_rugosa Rorug02G0484700
rosa_samantha Rh2AG549700 Rh2BG564100 Rh2DG573100
rosa_wichuraiana Rw2G045530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 50
AclWI GGATC 2 cut(s) 37, 50
AcuI CTGAAG 2 cut(s) 198, 237
AfiI CCNNNNNNNGG 2 cut(s) 91, 354
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 3 cut(s) 38, 79, 323
AluI AGCT 3 cut(s) 38, 79, 323
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 2 cut(s) 37, 50
ApeKI GCWGC 2 cut(s) 119, 320
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 248, 337
AvaII GGWCC 1 cut(s) 221
BamHI GGATCC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 131, 332
BccI CCATC 2 cut(s) 193, 232
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 4 cut(s) 6, 26, 35, 116
BisI GCNGC 2 cut(s) 120, 321
BlsI GCNGC 2 cut(s) 121, 322
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 354
BseBI CCWGG 1 cut(s) 349
BseLI CCNNNNNNNGG 2 cut(s) 91, 354
BseMII CTCAG 2 cut(s) 66, 81
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 131, 332
BseYI CCCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 91, 354
BsmAI GTCTC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 42, 154
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 67, 82
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 2 cut(s) 37, 50
BspQI GCTCTTC 1 cut(s) 174
BssMI GATC 2 cut(s) 42, 154
Bst2UI CCWGG 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 75, 90
BstEII GGTNACC 1 cut(s) 343
BstKTI GATC 2 cut(s) 45, 157
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 42, 154
BstMWI GCNNNNNNNGC 2 cut(s) 56, 317
BstNI CCWGG 1 cut(s) 349
BstPI GGTNACC 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 347
BstV1I GCAGC 2 cut(s) 131, 332
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 75, 90
DpnI GATC 2 cut(s) 44, 156
DpnII GATC 2 cut(s) 42, 154
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 2 cut(s) 198, 237
Eco91I GGTNACC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 347
FaiI YATR 2 cut(s) 192, 197
Fnu4HI GCNGC 2 cut(s) 120, 321
Fsp4HI GCNGC 2 cut(s) 120, 321
FspBI CTAG 4 cut(s) 6, 26, 35, 116
GluI GCNGC 2 cut(s) 120, 321
GsaI CCCAGC 1 cut(s) 42
HinfI GANTC 3 cut(s) 131, 137, 203
HphI GGTGA 2 cut(s) 248, 337
Hpy188I TCNGA 6 cut(s) 76, 130, 136, 154, 159, 233
HpyAV CCTTC 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 55, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 317
HpyF3I CTNAG 2 cut(s) 75, 90
Kzo9I GATC 2 cut(s) 42, 154
LguI GCTCTTC 1 cut(s) 174
LpnPI CCDG 9 cut(s) 2, 24, 41, 126, 132, 261, 325, 334, 361
Lsp1109I GCAGC 2 cut(s) 131, 332
LweI GCATC 1 cut(s) 262
MaeI CTAG 4 cut(s) 6, 26, 35, 116
MaeIII GTNAC 3 cut(s) 304, 332, 343
MalI GATC 2 cut(s) 44, 156
MboI GATC 2 cut(s) 42, 154
MboII GAAGA 2 cut(s) 23, 191
MflI RGATCY 1 cut(s) 42
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 4 cut(s) 85, 103, 193, 275
MseI TTAA 2 cut(s) 96, 370
MspA1I CMGCKG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 56, 317
NdeII GATC 2 cut(s) 42, 154
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 2 cut(s) 304, 343
PciSI GCTCTTC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 131, 137
PkrI GCNGC 2 cut(s) 121, 322
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 347
PspEI GGTNACC 1 cut(s) 343
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 96, 370
SatI GCNGC 2 cut(s) 120, 321
Sau3AI GATC 2 cut(s) 42, 154
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 349
SetI ASST 9 cut(s) 40, 81, 96, 114, 145, 151, 223, 286, 325
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
SsiI CCGC 1 cut(s) 50
SspMI CTAG 4 cut(s) 6, 26, 35, 116
StyD4I CCNGG 1 cut(s) 347
TfiI GAWTC 2 cut(s) 131, 137
Tru1I TTAA 2 cut(s) 96, 370
Tru9I TTAA 2 cut(s) 96, 370
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 304, 343
TseI GCWGC 2 cut(s) 119, 320
Tsp45I GTSAC 2 cut(s) 304, 343
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 221
XspI CTAG 4 cut(s) 6, 26, 35, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.