Rh2BG564100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015675
Physical Location & Seq
Forward (+)
77534091 .. 77536108
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG564100.1

Sequence Viewer

Length: 366 bp
ATGGCTAGAGTTGGTCTGGTTTGCCTAGTTCTTCTAGCTGGGATCCTTGTGGTCCAGGCAATGGCTGAAAAATCTGAGCTGAACCCAACTGAGGCTAAGCCCCAAAATGGGGTTTTAGCAGCACATTCAGATTCAGATTCAGGTTCAGATCAGAGTAGTGTTTCTGTTGCTGAAGAGCCATCTCATAGTATGGAGGAGTCTCAAGTGGCTGAAGGCCCATCTATCAGAAGGTTGGGGCCCTCAAAACATCACCAAGATAAGTCTGTTGCTGGTGGAGGTGTTATTATTGGTGGGCTTGTCACTGCCATTTTTGCAGCTGTCTTTTGCTACATCAGAGTCACCAGAAAAAGGGGAGGTGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.59

Weight (kDa)

6.4

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g43890
malus_domestica MD09G1102100.v1.1 MD09G1127500.v1.1
prunus_persica Prupe.3G223500_v2.0.a1 Prupe.3G223500_v2.0.a1
pyrus_communis pycom09g02570 pycom17g08680
rosa_chinensis RchiOBHm_Chr2g0160641
rosa_laevigata RLG00000021232
rosa_multiflora Rmu_sc0000674.1_g000030
rosa_roxburghii Rroxscaffold_2G00089530
rosa_rugosa Rorug02G0484700
rosa_samantha Rh2AG549700 Rh2BG564100 Rh2DG573100
rosa_wichuraiana Rw2G045530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 61
AclWI GGATC 2 cut(s) 37, 50
AcuI CTGAAG 2 cut(s) 192, 231
AfiI CCNNNNNNNGG 6 cut(s) 61, 91, 107, 108, 109, 348
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 3 cut(s) 38, 79, 317
AluI AGCT 3 cut(s) 38, 79, 317
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 2 cut(s) 37, 50
AoxI GGCC 2 cut(s) 214, 236
ApaI GGGCCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 119, 314
AspS9I GGNCC 4 cut(s) 52, 215, 236, 237
AsuHPI GGTGA 2 cut(s) 242, 331
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 240
BamHI GGATCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 131, 326
BccI CCATC 2 cut(s) 187, 226
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 3 cut(s) 6, 26, 35
BisI GCNGC 2 cut(s) 120, 315
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 2 cut(s) 121, 316
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 4 cut(s) 52, 215, 236, 237
BmiI GGNNCC 3 cut(s) 44, 237, 238
BmrFI CCNGG 1 cut(s) 56
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 91, 107, 108, 109, 348
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 56
BseLI CCNNNNNNNGG 6 cut(s) 61, 91, 107, 108, 109, 348
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 66, 81
BseRI GAGGAG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 2 cut(s) 131, 326
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 2 cut(s) 216, 238
BslI CCNNNNNNNGG 6 cut(s) 61, 91, 107, 108, 109, 348
BsmAI GTCTC 1 cut(s) 204
BsnI GGCC 2 cut(s) 216, 238
Bsp120I GGGCCC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 42, 148
Bsp1720I GCTNAGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 216, 238
BspCNI CTCAG 2 cut(s) 67, 82
BspLI GGNNCC 3 cut(s) 44, 237, 238
BspPI GGATC 2 cut(s) 37, 50
BspQI GCTCTTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 66
BssMI GATC 2 cut(s) 42, 148
Bst2UI CCWGG 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 168
BstDEI CTNAG 3 cut(s) 75, 90, 96
BstKTI GATC 2 cut(s) 45, 151
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 2 cut(s) 42, 148
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 131, 326
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 2 cut(s) 216, 238
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
Cfr13I GGNCC 4 cut(s) 52, 215, 236, 237
DdeI CTNAG 3 cut(s) 75, 90, 96
DpnI GATC 2 cut(s) 44, 150
DpnII GATC 2 cut(s) 42, 148
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 192, 231
EcoO109I RGGNCCY 2 cut(s) 236, 237
EcoRII CCWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 240
FaiI YATR 2 cut(s) 186, 191
Fnu4HI GCNGC 2 cut(s) 120, 315
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 2 cut(s) 120, 315
FspBI CTAG 3 cut(s) 6, 26, 35
GluI GCNGC 2 cut(s) 120, 315
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 2 cut(s) 216, 238
HinfI GANTC 4 cut(s) 131, 137, 197, 336
HphI GGTGA 2 cut(s) 242, 331
Hpy188I TCNGA 7 cut(s) 76, 130, 136, 148, 153, 227, 335
HpyAV CCTTC 2 cut(s) 206, 222
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 3 cut(s) 75, 90, 96
Kzo9I GATC 2 cut(s) 42, 148
LguI GCTCTTC 1 cut(s) 168
LpnPI CCDG 7 cut(s) 2, 24, 41, 68, 126, 255, 355
Lsp1109I GCAGC 2 cut(s) 131, 326
MaeI CTAG 3 cut(s) 6, 26, 35
MaeIII GTNAC 2 cut(s) 298, 337
MalI GATC 2 cut(s) 44, 150
MboI GATC 2 cut(s) 42, 148
MboII GAAGA 2 cut(s) 23, 185
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 240
MlyI GAGTC 2 cut(s) 206, 345
MnlI CCTC 5 cut(s) 85, 187, 250, 269, 347
MseI TTAA 1 cut(s) 364
MspA1I CMGCKG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 2 cut(s) 42, 148
NlaIV GGNNCC 3 cut(s) 44, 237, 238
NmuCI GTSAC 2 cut(s) 298, 337
PciSI GCTCTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 131, 137
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 2 cut(s) 121, 316
PleI GAGTC 2 cut(s) 205, 344
PpsI GAGTC 2 cut(s) 205, 344
Psp6I CCWGG 1 cut(s) 54
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 3 cut(s) 44, 237, 238
PspOMI GGGCCC 1 cut(s) 236
PspPI GGNCC 4 cut(s) 52, 215, 236, 237
PsuI RGATCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 2 cut(s) 120, 315
Sau3AI GATC 2 cut(s) 42, 148
Sau96I GGNCC 4 cut(s) 52, 215, 236, 237
SchI GAGTC 2 cut(s) 206, 345
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 240
SetI ASST 7 cut(s) 40, 81, 145, 233, 280, 319, 358
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
SspMI CTAG 3 cut(s) 6, 26, 35
StyD4I CCNGG 1 cut(s) 54
TfiI GAWTC 2 cut(s) 131, 137
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 2 cut(s) 298, 337
TseI GCWGC 2 cut(s) 119, 314
Tsp45I GTSAC 2 cut(s) 298, 337
TspRI CASTG 1 cut(s) 307
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 52
XspI CTAG 3 cut(s) 6, 26, 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.