Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015675

Physical Location & Seq

Genomic Coordinates Reverse (-)

11494798 .. 11496097

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTAGAGTTGGTCTGGTTTGCCTAGTTCTTCTGGCTGGGATCCTTGTGGTCCAGGCAATGGCTGAAAAATCTGAGCTGAACCCAACTGAGGCTAAGCCCCAAAATGGGGTTTTAGCAGCACATTCAGATTCAGATTCAGGTTCAGGTTCAGGTTCAGGTTCAGATCAGAGTAGTGTTTCTGTTGCTGAAGTGCCATCTCATAGTATGGAGGAGTCTCAAGTGGCTGAAGGCCCATCTATCAGAAAGTTGGGGCCCTCAAAGCATCACCAAGATAAGTCTGTTGCTGGTGGAGGTGTTATTATTGGTGGGCTTGTCACTGCCATTTTTGCAGCGGTCTTTTGCTACATCAGGGTCACCAGAAAAAGGGGAGGTGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

12.96

Weight (kDa)

6.9

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43890
malus_domestica	MD09G1102100.v1.1 MD09G1127500.v1.1
prunus_persica	Prupe.3G223500_v2.0.a1 Prupe.3G223500_v2.0.a1
pyrus_communis	pycom09g02570 pycom17g08680
rosa_chinensis	RchiOBHm_Chr2g0160641
rosa_laevigata	RLG00000021232
rosa_multiflora	Rmu_sc0000674.1_g000030
rosa_roxburghii	Rroxscaffold_2G00089530
rosa_rugosa	Rorug02G0484700
rosa_samantha	Rh2AG549700 Rh2BG564100 Rh2DG573100
rosa_wichuraiana	Rw2G045530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	2 cut(s)	37, 50
AcuI	CTGAAG	2 cut(s)	210, 249
AfiI	CCNNNNNNNGG	6 cut(s)	61, 91, 107, 108, 109, 366
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	37, 50
AoxI	GGCC	2 cut(s)	232, 254
ApaI	GGGCCC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	119, 332
AspS9I	GGNCC	4 cut(s)	52, 233, 254, 255
AsuHPI	GGTGA	2 cut(s)	260, 349
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	131, 344
BccI	CCATC	2 cut(s)	205, 244
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	6, 26
BisI	GCNGC	2 cut(s)	120, 333
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	2 cut(s)	121, 334
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	4 cut(s)	52, 233, 254, 255
BmiI	GGNNCC	3 cut(s)	44, 255, 256
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	274
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 91, 107, 108, 109, 366
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	56
BseLI	CCNNNNNNNGG	6 cut(s)	61, 91, 107, 108, 109, 366
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	66, 81
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	131, 344
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	234, 256
BslI	CCNNNNNNNGG	6 cut(s)	61, 91, 107, 108, 109, 366
BsmAI	GTCTC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	234, 256
Bsp120I	GGGCCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	42, 166
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	2 cut(s)	234, 256
BspCNI	CTCAG	2 cut(s)	67, 82
BspLI	GGNNCC	3 cut(s)	44, 255, 256
BspPI	GGATC	2 cut(s)	37, 50
BsrDI	GCAATG	1 cut(s)	66
BssMI	GATC	2 cut(s)	42, 166
Bst2UI	CCWGG	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	75, 90, 96
BstEII	GGTNACC	1 cut(s)	355
BstKTI	GATC	2 cut(s)	45, 169
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	2 cut(s)	42, 166
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 329
BstNI	CCWGG	1 cut(s)	56
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	131, 344
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	234, 256
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cfr13I	GGNCC	4 cut(s)	52, 233, 254, 255
DdeI	CTNAG	3 cut(s)	75, 90, 96
DpnI	GATC	2 cut(s)	44, 168
DpnII	GATC	2 cut(s)	42, 166
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	210, 249
Eco91I	GGTNACC	1 cut(s)	355
EcoO109I	RGGNCCY	2 cut(s)	254, 255
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	258
FaiI	YATR	2 cut(s)	204, 209
Fnu4HI	GCNGC	2 cut(s)	120, 333
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	120, 333
FspBI	CTAG	2 cut(s)	6, 26
GluI	GCNGC	2 cut(s)	120, 333
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	234, 256
HinfI	GANTC	3 cut(s)	131, 137, 215
HphI	GGTGA	2 cut(s)	260, 349
Hpy188I	TCNGA	6 cut(s)	76, 130, 136, 166, 171, 245
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 329
HpyF3I	CTNAG	3 cut(s)	75, 90, 96
Kzo9I	GATC	2 cut(s)	42, 166
Lsp1109I	GCAGC	2 cut(s)	131, 344
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	6, 26
MaeIII	GTNAC	2 cut(s)	316, 355
MalI	GATC	2 cut(s)	44, 168
MboI	GATC	2 cut(s)	42, 166
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	85, 205, 268, 287, 365
MseI	TTAA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	262, 329
NdeII	GATC	2 cut(s)	42, 166
NlaIV	GGNNCC	3 cut(s)	44, 255, 256
NmuCI	GTSAC	2 cut(s)	316, 355
PfeI	GAWTC	2 cut(s)	131, 137
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	121, 334
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	54
PspEI	GGTNACC	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	44, 255, 256
PspOMI	GGGCCC	1 cut(s)	254
PspPI	GGNCC	4 cut(s)	52, 233, 254, 255
PsuI	RGATCY	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	382
SatI	GCNGC	2 cut(s)	120, 333
Sau3AI	GATC	2 cut(s)	42, 166
Sau96I	GGNCC	4 cut(s)	52, 233, 254, 255
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	7 cut(s)	81, 145, 151, 157, 163, 298, 376
SfaNI	GCATC	1 cut(s)	274
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	2 cut(s)	6, 26
StyD4I	CCNGG	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	131, 137
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	316, 355
TseI	GCWGC	2 cut(s)	119, 332
Tsp45I	GTSAC	2 cut(s)	316, 355
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	52
XspI	CTAG	2 cut(s)	6, 26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.