Rorug02G0484700

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001427
Physical Location & Seq
Reverse (-)
61435789 .. 61438595
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0484700.1

Sequence Viewer

Length: 1521 bp
ATGGGATCCGAAGAAGAGCAGCCGCTACTACATGGAATTGACTCTCCGACGACTCGCATTTCTGATCTGTCGTCCACCGTGATCGAAGAGTTTCTAGAACAACCGCGGCGGGTGGCATTTCGATGCTGGGCTCGGCTGGTTGCTTGGGAGTCAAGGATCCTCTGGATTTTATCTGGATCATCAATTGCTGTTTCTGTATTCAATTATATGTTGAGTTTCGTCACTCTCATATTTTGTGGGCAAATGAGCGCTTTGGAGCTCGCTGGTGCCTCGATTGCTAGTGTTGGAATACAAGGTCTTGCTTATGGAATCATGTTGGGCATGGCAAGTGCTGTACAAACAGTTTGTGGGCAAGCCTATGGAGCAAAACGCTTGCCAGCAATGGGGATCATATGCCAAAGAGCAATCATTTTGCACTTGGGAGCTGCAATCCTCCTCACACCTGTGTACTGGTGGTCAGGCGCAATACTCATCGCCATCGGCCAATCAGAGGACATAGCAGGGCAGGGTCAAATCTTTGCACACGGCTTGATCCCTCAACTCTATGCATTTGCCATAAACTGCCCACAACAGAGGTTCCTTCAAGCACAGAACATAGTGAACCCTTTGGCATACATCTCTACGGGAGTTTTCACCCTTCACATTCTTCTCAGTTGGCTAGTGGTATTTGTTGCTGACTATGGACTAACTGGTGCTGCTCTTACACTGAGTTTTTCTTGGTGGTTGCTTGTTTTAATATGTGGGATTTACATTCTTGTAAGCCCCAACTGCAACGAAACTTGGACCGGCTTCTCTTGGAAAGCTTTCAATGGAATTTGGCCTTATTTAAAGTTGACTATCGCCTCTGCCGTCATGCTGTGTTTGGAGATATGGTACAACCAAGGACTAACCCTGATATCTGGGCTCCTCCCCAACCCTACAATATCTCTAGATTCCCTTTCAATTTGTATGAATTACTGGTGCTGGAGTCTGCAGTTTATGTTAGGATTAAGTGCAGCAGCCAGTGTTAGAGTGAGTAATGAGCTAGGGGCTGGTAATCCAAAGGTGGCCAAATTTTCGGTTTTTGTAGTGACCGGTACAAGCATCCTGATTAGTGTAGTCTTCACTGCAATCATTTTGATATTCCAAATTGGATTAAGCAAGCTGTTTACAAGCGACCCCGAGGTTCTCCAAGCAGTGCTTGAGTTAATTCCGATGCTGGCTATCTCTGTTTTTTTGAATGGCATCCAACCTATACTCTCAGGTGTGGCAATTGGAAGCGGGTGGCAAGACATCGTGGCTTATGTTAACGTTATTTGTTTCTATATCATTGGACTCCCAATTGGATGTGTTCTTGGCTTCAAAACTGATATGGGAGTAGCAGGCATTTGGTGGGGGATGATTGTGGGCGTTGGTTTACAAACAATAACTCTAATTATTCTCACTGCCAGAACAAATTGGAATGCTGAGGTTGTGAAAGCTGCTGATCGCTTGAAAAGATCTACAAGTGAAGAAATCTTGAACTTGGTGGGGGTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

506

Amino Acids

54.86

Weight (kDa)

5.63

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 62 - 220 3.7e-24 MatE
MatE PF01554 282 - 442 2.4e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 106
AciI CCGC 5 cut(s) 23, 104, 106, 109, 1260
AclI AACGTT 1 cut(s) 1290
AclWI GGATC 6 cut(s) 13, 151, 164, 184, 395, 526
AcoI YGGCCR 2 cut(s) 481, 1047
AcsI RAATTY 2 cut(s) 813, 1052
AfaI GTAC 4 cut(s) 336, 449, 875, 1078
AfeI AGCGCT 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 383, 490
AgeI ACCGGT 1 cut(s) 1073
AgsI TTSAA 8 cut(s) 202, 584, 808, 942, 1219, 1342, 1474, 1501
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 6 cut(s) 259, 425, 803, 1024, 1144, 1460
AluI AGCT 6 cut(s) 259, 425, 803, 1024, 1144, 1460
Alw21I GWGCWC 1 cut(s) 261
AlwI GGATC 6 cut(s) 13, 151, 164, 184, 395, 526
Ama87I CYCGRG 1 cut(s) 1160
Aor51HI AGCGCT 1 cut(s) 250
AoxI GGCC 3 cut(s) 481, 818, 1047
ApeKI GCWGC 6 cut(s) 19, 425, 695, 995, 998, 1460
ApoI RAATTY 2 cut(s) 813, 1052
AsiGI ACCGGT 1 cut(s) 1073
Asp700I GAANNNNTTC 2 cut(s) 90, 803
AspLEI GCGC 2 cut(s) 251, 464
AspS9I GGNCC 1 cut(s) 783
AsuHPI GGTGA 1 cut(s) 625
AvaI CYCGRG 1 cut(s) 1160
AvaII GGWCC 1 cut(s) 783
BalI TGGCCA 1 cut(s) 1049
BamHI GGATCC 2 cut(s) 5, 156
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 3 cut(s) 133, 261, 906
BbsI GAAGAC 1 cut(s) 1093
Bbv12I GWGCWC 1 cut(s) 261
BbvCI CCTCAGC 1 cut(s) 1446
BbvI GCAGC 6 cut(s) 31, 412, 682, 1007, 1010, 1447
BccI CCATC 1 cut(s) 485
BceAI ACGGC 2 cut(s) 541, 833
BfaI CTAG 5 cut(s) 95, 279, 659, 929, 1025
BfmI CTRYAG 1 cut(s) 971
BfoI RGCGCY 1 cut(s) 252
BglII AGATCT 1 cut(s) 1478
BisI GCNGC 8 cut(s) 20, 23, 107, 426, 696, 996, 999, 1461
BlsI GCNGC 8 cut(s) 21, 24, 108, 427, 697, 997, 1000, 1462
Bme18I GGWCC 1 cut(s) 783
BmeT110I CYCGRG 1 cut(s) 1160
BmgT120I GGNCC 1 cut(s) 783
BmiI GGNNCC 5 cut(s) 7, 158, 268, 578, 905
BmsI GCATC 4 cut(s) 113, 1092, 1185, 1233
BpiI GAAGAC 1 cut(s) 1093
BpmI CTGGAG 1 cut(s) 985
Bpu10I CCTNAGC 1 cut(s) 1446
BpuEI CTTGAG 1 cut(s) 1202
BsaJI CCNNGG 3 cut(s) 104, 880, 1161
BsaWI WCCGGW 1 cut(s) 1073
BsaXI ACNNNNNCTCC 2 cut(s) 857, 887
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 490
Bse118I RCCGGY 2 cut(s) 785, 1073
Bse1I ACTGG 4 cut(s) 455, 694, 962, 1002
Bse3DI GCAATG 1 cut(s) 387
BseDI CCNNGG 3 cut(s) 104, 880, 1161
BseGI GGATG 4 cut(s) 1083, 1224, 1331, 1383
BseLI CCNNNNNNNGG 2 cut(s) 383, 490
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 4 cut(s) 664, 698, 1254, 1437
BseNI ACTGG 4 cut(s) 455, 694, 962, 1002
BseRI GAGGAG 2 cut(s) 425, 896
BseXI GCAGC 6 cut(s) 31, 412, 682, 1007, 1010, 1447
BseYI CCCAGC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 1014
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 483, 820, 1049
BshNI GGYRCC 1 cut(s) 266
BshTI ACCGGT 1 cut(s) 1073
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 1160
BsiSI CCGG 2 cut(s) 786, 1074
BslI CCNNNNNNNGG 2 cut(s) 383, 490
BsmI GAATGC 1 cut(s) 1447
BsnI GGCC 3 cut(s) 483, 820, 1049
BsoBI CYCGRG 1 cut(s) 1160
Bsp1286I GDGCHC 3 cut(s) 133, 261, 906
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 9 cut(s) 5, 64, 81, 156, 176, 387, 531, 1465, 1478
BspACI CCGC 5 cut(s) 23, 104, 106, 109, 1260
BspANI GGCC 3 cut(s) 483, 820, 1049
BspCNI CTCAG 4 cut(s) 663, 699, 1253, 1438
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 5 cut(s) 7, 158, 268, 578, 905
BspMAI CTGCAG 1 cut(s) 975
BspPI GGATC 6 cut(s) 13, 151, 164, 184, 395, 526
BspQI GCTCTTC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 2 cut(s) 785, 1073
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 4 cut(s) 455, 694, 962, 1002
BssAI RCCGGY 2 cut(s) 785, 1073
BssECI CCNNGG 3 cut(s) 104, 880, 1161
BssMI GATC 9 cut(s) 5, 64, 81, 156, 176, 387, 531, 1465, 1478
BssT1I CCWWGG 1 cut(s) 880
Bst4CI ACNGT 2 cut(s) 79, 343
Bst6I CTCTTC 2 cut(s) 9, 81
BstAUI TGTACA 1 cut(s) 334
BstC8I GCNNGC 7 cut(s) 261, 354, 374, 378, 1142, 1200, 1363
BstDEI CTNAG 4 cut(s) 650, 707, 1240, 1446
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 4 cut(s) 1083, 1224, 1331, 1383
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 2 cut(s) 251, 464
BstKTI GATC 9 cut(s) 8, 67, 84, 159, 179, 390, 534, 1468, 1481
BstMBI GATC 9 cut(s) 5, 64, 81, 156, 176, 387, 531, 1465, 1478
BstMWI GCNNNNNNNGC 3 cut(s) 275, 362, 768
BstSFI CTRYAG 1 cut(s) 971
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 6 cut(s) 31, 412, 682, 1007, 1010, 1447
BstV2I GAAGAC 1 cut(s) 1093
BstX2I RGATCY 3 cut(s) 5, 156, 1478
BstYI RGATCY 3 cut(s) 5, 156, 1478
BsuRI GGCC 3 cut(s) 483, 820, 1049
BtgI CCRYGG 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 457
BtsCI GGATG 4 cut(s) 1083, 1224, 1331, 1383
BtsI GCAGTG 3 cut(s) 1104, 1182, 1422
BtsIMutI CAGTG 5 cut(s) 704, 1009, 1104, 1182, 1422
Cac8I GCNNGC 7 cut(s) 261, 354, 374, 378, 1142, 1200, 1363
CfoI GCGC 2 cut(s) 251, 464
Cfr10I RCCGGY 2 cut(s) 785, 1073
Cfr13I GGNCC 1 cut(s) 783
Cfr42I CCGCGG 1 cut(s) 107
Csp6I GTAC 4 cut(s) 335, 448, 874, 1077
CspAI ACCGGT 1 cut(s) 1073
CviAII CATG 4 cut(s) 32, 313, 322, 853
CviQI GTAC 4 cut(s) 335, 448, 874, 1077
DdeI CTNAG 4 cut(s) 650, 707, 1240, 1446
DpnI GATC 9 cut(s) 7, 66, 83, 158, 178, 389, 533, 1467, 1480
DpnII GATC 9 cut(s) 5, 64, 81, 156, 176, 387, 531, 1465, 1478
DraI TTTAAA 1 cut(s) 828
EaeI YGGCCR 2 cut(s) 481, 1047
Eam1104I CTCTTC 2 cut(s) 9, 81
EarI CTCTTC 2 cut(s) 9, 81
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 880
Eco24I GRGCYC 3 cut(s) 133, 261, 906
Eco32I GATATC 1 cut(s) 897
Eco47I GGWCC 1 cut(s) 783
Eco47III AGCGCT 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 1160
EcoICRI GAGCTC 1 cut(s) 259
EcoRV GATATC 1 cut(s) 897
EcoT14I CCWWGG 1 cut(s) 880
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 3 cut(s) 133, 261, 906
ErhI CCWWGG 1 cut(s) 880
FaeI CATG 4 cut(s) 35, 316, 325, 856
FalI AAGNNNNNCTT 2 cut(s) 1164, 1196
FatI CATG 4 cut(s) 31, 312, 321, 852
FauI CCCGC 2 cut(s) 102, 1253
FauNDI CATATG 1 cut(s) 392
Fnu4HI GCNGC 8 cut(s) 20, 23, 107, 426, 696, 996, 999, 1461
FokI GGATG 4 cut(s) 1070, 1211, 1338, 1390
FriOI GRGCYC 3 cut(s) 133, 261, 906
Fsp4HI GCNGC 8 cut(s) 20, 23, 107, 426, 696, 996, 999, 1461
FspBI CTAG 5 cut(s) 95, 279, 659, 929, 1025
GlaI GCGC 2 cut(s) 250, 463
GluI GCNGC 8 cut(s) 20, 23, 107, 426, 696, 996, 999, 1461
GsaI CCCAGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 985
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 3 cut(s) 483, 820, 1049
HapII CCGG 2 cut(s) 786, 1074
HhaI GCGC 2 cut(s) 251, 464
Hin1II CATG 4 cut(s) 35, 316, 325, 856
Hin6I GCGC 2 cut(s) 249, 462
HinP1I GCGC 2 cut(s) 249, 462
HincII GTYRAC 2 cut(s) 834, 1288
HindII GTYRAC 2 cut(s) 834, 1288
HindIII AAGCTT 1 cut(s) 801
HinfI GANTC 7 cut(s) 41, 52, 149, 309, 932, 967, 1314
HpaI GTTAAC 1 cut(s) 1288
HpaII CCGG 2 cut(s) 786, 1074
HphI GGTGA 1 cut(s) 625
Hpy166II GTNNAC 7 cut(s) 75, 448, 601, 834, 1149, 1288, 1397
Hpy188I TCNGA 5 cut(s) 10, 48, 64, 490, 1194
Hpy188III TCNNGA 6 cut(s) 95, 163, 174, 929, 1087, 1498
Hpy8I GTNNAC 7 cut(s) 75, 448, 601, 834, 1149, 1288, 1397
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 590, 647
HpyCH4III ACNGT 2 cut(s) 79, 343
HpyCH4IV ACGT 1 cut(s) 1290
HpyCH4V TGCA 8 cut(s) 415, 428, 521, 548, 771, 973, 995, 1109
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 362, 768
HpyF3I CTNAG 4 cut(s) 650, 707, 1240, 1446
HpySE526I ACGT 1 cut(s) 1290
Hsp92II CATG 4 cut(s) 35, 316, 325, 856
HspAI GCGC 2 cut(s) 249, 462
KspAI GTTAAC 1 cut(s) 1288
KspI CCGCGG 1 cut(s) 107
Kzo9I GATC 9 cut(s) 5, 64, 81, 156, 176, 387, 531, 1465, 1478
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 4 cut(s) 256, 362, 422, 909
Lsp1109I GCAGC 6 cut(s) 31, 412, 682, 1007, 1010, 1447
LweI GCATC 4 cut(s) 113, 1092, 1185, 1233
MaeI CTAG 5 cut(s) 95, 279, 659, 929, 1025
MaeII ACGT 1 cut(s) 1290
MaeIII GTNAC 2 cut(s) 220, 1069
MalI GATC 9 cut(s) 7, 66, 83, 158, 178, 389, 533, 1467, 1480
MboI GATC 9 cut(s) 5, 64, 81, 156, 176, 387, 531, 1465, 1478
MboII GAAGA 6 cut(s) 23, 26, 98, 638, 1093, 1502
MfeI CAATTG 3 cut(s) 183, 1251, 1320
MflI RGATCY 3 cut(s) 5, 156, 1478
MhlI GDGCHC 3 cut(s) 133, 261, 906
MlsI TGGCCA 1 cut(s) 1049
MluNI TGGCCA 1 cut(s) 1049
MlyI GAGTC 5 cut(s) 35, 46, 158, 976, 1308
MmeI TCCRAC 3 cut(s) 71, 265, 1252
Mox20I TGGCCA 1 cut(s) 1049
Mph1103I ATGCAT 1 cut(s) 550
MroXI GAANNNNTTC 2 cut(s) 90, 803
MscI TGGCCA 1 cut(s) 1049
MseI TTAA 6 cut(s) 734, 827, 989, 1136, 1187, 1287
MslI CAYNNNNRTG 2 cut(s) 121, 443
Msp20I TGGCCA 1 cut(s) 1049
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 2 cut(s) 786, 1074
MunI CAATTG 3 cut(s) 183, 1251, 1320
Mva1269I GAATGC 1 cut(s) 1447
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 275, 362, 768
NdeI CATATG 1 cut(s) 392
NdeII GATC 9 cut(s) 5, 64, 81, 156, 176, 387, 531, 1465, 1478
NlaIII CATG 4 cut(s) 35, 316, 325, 856
NlaIV GGNNCC 5 cut(s) 7, 158, 268, 578, 905
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 220, 1069
NsiI ATGCAT 1 cut(s) 550
OliI CACNNNNGTG 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 846
PctI GAATGC 1 cut(s) 1447
PdmI GAANNNNTTC 2 cut(s) 90, 803
PfeI GAWTC 2 cut(s) 309, 932
PinAI ACCGGT 1 cut(s) 1073
PkrI GCNGC 8 cut(s) 21, 24, 108, 427, 697, 997, 1000, 1462
PleI GAGTC 5 cut(s) 35, 46, 157, 975, 1308
PpsI GAGTC 5 cut(s) 35, 46, 157, 975, 1308
Psp124BI GAGCTC 1 cut(s) 261
Psp1406I AACGTT 1 cut(s) 1290
PspFI CCCAGC 1 cut(s) 126
PspN4I GGNNCC 5 cut(s) 7, 158, 268, 578, 905
PspPI GGNCC 1 cut(s) 783
PstI CTGCAG 1 cut(s) 975
PsuI RGATCY 3 cut(s) 5, 156, 1478
RsaI GTAC 4 cut(s) 336, 449, 875, 1078
RsaNI GTAC 4 cut(s) 335, 448, 874, 1077
RseI CAYNNNNRTG 2 cut(s) 121, 443
SacI GAGCTC 1 cut(s) 261
SacII CCGCGG 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 6 cut(s) 734, 827, 989, 1136, 1187, 1287
SatI GCNGC 8 cut(s) 20, 23, 107, 426, 696, 996, 999, 1461
Sau3AI GATC 9 cut(s) 5, 64, 81, 156, 176, 387, 531, 1465, 1478
Sau96I GGNCC 1 cut(s) 783
SchI GAGTC 5 cut(s) 35, 46, 158, 976, 1308
SduI GDGCHC 3 cut(s) 133, 261, 906
SfaNI GCATC 4 cut(s) 113, 1092, 1185, 1233
SfcI CTRYAG 1 cut(s) 971
Sfr303I CCGCGG 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 107
SinI GGWCC 1 cut(s) 783
SmiMI CAYNNNNRTG 2 cut(s) 121, 443
SmlI CTYRAG 1 cut(s) 1181
SmoI CTYRAG 1 cut(s) 1181
SsiI CCGC 5 cut(s) 23, 104, 106, 109, 1260
SspMI CTAG 5 cut(s) 95, 279, 659, 929, 1025
SstI GAGCTC 1 cut(s) 261
StyI CCWWGG 1 cut(s) 880
TaaI ACNGT 2 cut(s) 79, 343
TaiI ACGT 1 cut(s) 1293
TaqI TCGA 3 cut(s) 84, 121, 272
TatI WGTACW 2 cut(s) 334, 447
TauI GCSGC 2 cut(s) 25, 109
TfiI GAWTC 2 cut(s) 309, 932
Tru1I TTAA 6 cut(s) 734, 827, 989, 1136, 1187, 1287
Tru9I TTAA 6 cut(s) 734, 827, 989, 1136, 1187, 1287
TscAI CASTG 5 cut(s) 711, 1009, 1111, 1182, 1429
TseFI GTSAC 2 cut(s) 220, 1069
TseI GCWGC 6 cut(s) 19, 425, 695, 995, 998, 1460
Tsp45I GTSAC 2 cut(s) 220, 1069
TspDTI ATGAA 1 cut(s) 965
TspRI CASTG 5 cut(s) 711, 1009, 1111, 1182, 1429
VpaK11BI GGWCC 1 cut(s) 783
XapI RAATTY 2 cut(s) 813, 1052
XbaI TCTAGA 2 cut(s) 94, 928
XmnI GAANNNNTTC 2 cut(s) 90, 803
XspI CTAG 5 cut(s) 95, 279, 659, 929, 1025
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.