Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Reverse (-)

12103943 .. 12104872

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTCGTCATCCTTGTTGCCATTGTAATCTCCATGACCCTCCGCTTGGACCCCACCGCCCAAACCCCCAAATCCGCCACACCCATCAGCCACGTCATCTCTTTCGGCGCCTCAAGAACTCTCGGGCCTCCGGCTTCACCGTCACGACGGTACTCCTCCAAATCTTGTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCTCGCAGGCTTACACATAAAGAGCTTTCATCCTTGCCTGCGAGGACTCTACTTAGGACTATGGTTCATGGTGAACAACCTCTAGAAGTCACCGAATTTATGAGTTTCATGCCGGAATTGGTCATCAATGGAGTGAGGATTGTGGCGCCCGACATCTATTCTTCGAACAACTTGGTTGTCCATGGGATTTCTCGAGCTTTCGAGGTGAATGATCTGCCTAATACCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

143

Amino Acids

15.81

Weight (kDa)

10.0

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	54 - 133	1.3e-07	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 346
AciI	CCGC	3 cut(s)	43, 57, 75
AcsI	RAATTY	1 cut(s)	296
AcyI	GRCGYC	2 cut(s)	108, 347
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	94
AluBI	AGCT	2 cut(s)	226, 398
AluI	AGCT	2 cut(s)	226, 398
Ama87I	CYCGRG	2 cut(s)	122, 393
AoxI	GGCC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	110, 349
AspS9I	GGNCC	2 cut(s)	49, 125
AsuHPI	GGTGA	4 cut(s)	129, 283, 284, 418
AsuII	TTCGAA	1 cut(s)	365
AvaI	CYCGRG	2 cut(s)	122, 393
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	2 cut(s)	107, 346
BccI	CCATC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	284
BfoI	RGCGCY	2 cut(s)	111, 350
BglI	GCCNNNNNGGC	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	2 cut(s)	122, 393
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	49, 125
BmiI	GGNNCC	3 cut(s)	51, 109, 348
Bpu14I	TTCGAA	1 cut(s)	365
BpuEI	CTTGAG	2 cut(s)	97, 194
BsaHI	GRCGYC	2 cut(s)	108, 347
BsaJI	CCNNGG	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	2 cut(s)	9, 230
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	2 cut(s)	107, 346
BsiHKCI	CYCGRG	2 cut(s)	122, 393
BsiSI	CCGG	2 cut(s)	131, 314
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	2 cut(s)	122, 393
Bsp119I	TTCGAA	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	412
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	3 cut(s)	43, 57, 75
BspANI	GGCC	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	51, 109, 348
BspT104I	TTCGAA	1 cut(s)	365
BspT107I	GGYRCC	2 cut(s)	107, 346
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	1 cut(s)	412
BssNI	GRCGYC	2 cut(s)	108, 347
BssT1I	CCWWGG	1 cut(s)	382
Bst4CI	ACNGT	2 cut(s)	141, 150
BstACI	GRCGYC	2 cut(s)	108, 347
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	209, 240
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	9, 230
BstH2I	RGCGCY	2 cut(s)	111, 350
BstHHI	GCGC	2 cut(s)	110, 349
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	382
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	9, 230
Cac8I	GCNNGC	2 cut(s)	209, 240
CfoI	GCGC	2 cut(s)	110, 349
Cfr13I	GGNCC	2 cut(s)	49, 125
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	4 cut(s)	34, 269, 310, 383
CviJI	RGCY	6 cut(s)	90, 127, 134, 211, 226, 398
CviKI_1	RGCY	6 cut(s)	90, 127, 134, 211, 226, 398
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	254
DinI	GGCGCC	2 cut(s)	109, 348
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
DraIII	CACNNNGTG	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	49
Eco88I	CYCGRG	2 cut(s)	122, 393
EcoT14I	CCWWGG	1 cut(s)	382
EgeI	GGCGCC	2 cut(s)	109, 348
EheI	GGCGCC	2 cut(s)	109, 348
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	4 cut(s)	37, 272, 313, 386
FaiI	YATR	7 cut(s)	35, 219, 263, 270, 302, 311, 384
FatI	CATG	4 cut(s)	33, 268, 309, 382
FokI	GGATG	1 cut(s)	217
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	2 cut(s)	109, 348
HaeII	RGCGCY	2 cut(s)	111, 350
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	2 cut(s)	131, 314
HhaI	GCGC	2 cut(s)	110, 349
Hin1I	GRCGYC	2 cut(s)	108, 347
Hin1II	CATG	4 cut(s)	37, 272, 313, 386
Hin6I	GCGC	2 cut(s)	108, 347
HinP1I	GCGC	2 cut(s)	108, 347
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	131, 314
HphI	GGTGA	4 cut(s)	129, 283, 284, 418
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188III	TCNNGA	4 cut(s)	114, 144, 284, 393
Hpy8I	GTNNAC	1 cut(s)	275
Hpy99I	CGWCG	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	141, 150
HpyCH4IV	ACGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	2 cut(s)	108, 347
Hsp92II	CATG	4 cut(s)	37, 272, 313, 386
HspAI	GCGC	2 cut(s)	108, 347
KasI	GGCGCC	2 cut(s)	107, 346
Kzo9I	GATC	1 cut(s)	412
LpnPI	CCDG	4 cut(s)	144, 193, 252, 327
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	141, 289
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	2 cut(s)	190, 354
MluCI	AATT	2 cut(s)	296, 317
Mly113I	GGCGCC	2 cut(s)	108, 347
MlyI	GAGTC	1 cut(s)	241
MspI	CCGG	2 cut(s)	131, 314
MwoI	GCNNNNNNNGC	1 cut(s)	208
NarI	GGCGCC	2 cut(s)	108, 347
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	4 cut(s)	37, 272, 313, 386
NlaIV	GGNNCC	3 cut(s)	51, 109, 348
NmuCI	GTSAC	2 cut(s)	141, 289
NspV	TTCGAA	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	393
PleI	GAGTC	1 cut(s)	241
PluTI	GGCGCC	2 cut(s)	111, 350
PpsI	GAGTC	1 cut(s)	241
PspN4I	GGNNCC	3 cut(s)	51, 109, 348
PspPI	GGNCC	2 cut(s)	49, 125
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	2 cut(s)	49, 125
SchI	GAGTC	1 cut(s)	241
SetI	ASST	6 cut(s)	96, 191, 228, 283, 400, 408
SfoI	GGCGCC	2 cut(s)	109, 348
Sfr274I	CTCGAG	1 cut(s)	393
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	393
SmlI	CTYRAG	3 cut(s)	112, 173, 393
SmoI	CTYRAG	3 cut(s)	112, 173, 393
Sse9I	AATT	2 cut(s)	296, 317
SsiI	CCGC	3 cut(s)	43, 57, 75
SspDI	GGCGCC	2 cut(s)	107, 346
SspMI	CTAG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	141, 150
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	365, 394, 402
TasI	AATT	2 cut(s)	296, 317
TseFI	GTSAC	2 cut(s)	141, 289
Tsp45I	GTSAC	2 cut(s)	141, 289
TspDTI	ATGAA	3 cut(s)	219, 257, 298
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	296
XbaI	TCTAGA	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	393
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.