Rh3CG242900

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001427
Physical Location & Seq
Reverse (-)
23277860 .. 23278345
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG242900.1

Sequence Viewer

Length: 486 bp
ATGGATCCCAATTATGATGTCATTCAGGCGCCTGTGTGCGAGTCCAATTCGAGTGTCGTTTCTAGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTGTTTGGTTGCTGAGCTTAAAGGGGTTTGTGCCATTTGCAATTGGGCCGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACTATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTTGGGCTTTGCTTGAGAAGATTGTGAGGTATCACATTGTGCCTCAGAGGCTTACACACAGGGAGCTTTCGGCCTTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGGGTTTATGAGTTTCATGCCAGAATTGGTCTTCAATGGAGTGAGGATCGTGGCGCCTGACATCTATTCTTCAAACCCCGAGCTTTCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

161

Amino Acids

17.99

Weight (kDa)

7.07

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 28, 445
AciI CCGC 1 cut(s) 161
AclWI GGATC 2 cut(s) 12, 446
AcyI GRCGYC 2 cut(s) 29, 446
AdeI CACNNNGTG 1 cut(s) 298
AgsI TTSAA 4 cut(s) 79, 188, 427, 465
AluBI AGCT 6 cut(s) 129, 207, 241, 248, 325, 475
AluI AGCT 6 cut(s) 129, 207, 241, 248, 325, 475
Alw21I GWGCWC 2 cut(s) 209, 250
AlwI GGATC 2 cut(s) 12, 446
AlwNI CAGNNNCTG 1 cut(s) 382
Ama87I CYCGRG 1 cut(s) 470
AoxI GGCC 2 cut(s) 158, 330
AspLEI GCGC 2 cut(s) 31, 448
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 470
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 28, 445
BanII GRGCYC 2 cut(s) 209, 250
BbsI GAAGAC 1 cut(s) 415
Bbv12I GWGCWC 2 cut(s) 209, 250
BccI CCATC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BclI TGATCA 1 cut(s) 373
BfaI CTAG 1 cut(s) 63
BfoI RGCGCY 2 cut(s) 32, 449
BglI GCCNNNNNGGC 1 cut(s) 307
BisI GCNGC 1 cut(s) 161
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 3 cut(s) 6, 30, 447
BmrI ACTGGG 1 cut(s) 402
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 353
Bpu1102I GCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 293
BsaHI GRCGYC 2 cut(s) 29, 446
BsaJI CCNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 3 cut(s) 116, 317, 367
BseNI ACTGG 1 cut(s) 397
BshFI GGCC 2 cut(s) 160, 332
BshNI GGYRCC 2 cut(s) 28, 445
BsiHKAI GWGCWC 2 cut(s) 209, 250
BsiHKCI CYCGRG 1 cut(s) 470
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 2 cut(s) 160, 332
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 209, 250
Bsp143I GATC 3 cut(s) 4, 373, 438
Bsp1720I GCTNAGC 1 cut(s) 125
BspACI CCGC 1 cut(s) 161
BspANI GGCC 2 cut(s) 160, 332
BspCNI CTCAG 3 cut(s) 117, 316, 366
BspLI GGNNCC 3 cut(s) 6, 30, 447
BspPI GGATC 2 cut(s) 12, 446
BspQI GCTCTTC 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 28, 445
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 3 cut(s) 4, 373, 438
BssNI GRCGYC 2 cut(s) 29, 446
BssT1I CCWWGG 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 2 cut(s) 29, 446
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 3 cut(s) 125, 303, 353
BstF5I GGATG 1 cut(s) 256
BstH2I RGCGCY 2 cut(s) 32, 449
BstHHI GCGC 2 cut(s) 31, 448
BstKTI GATC 3 cut(s) 7, 376, 441
BstMBI GATC 3 cut(s) 4, 373, 438
BstMWI GCNNNNNNNGC 2 cut(s) 307, 338
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 160, 332
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 2 cut(s) 31, 448
Cfr13I GGNCC 1 cut(s) 158
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 2 cut(s) 368, 409
DdeI CTNAG 3 cut(s) 125, 303, 353
DinI GGCGCC 2 cut(s) 30, 447
DpnI GATC 3 cut(s) 6, 375, 440
DpnII GATC 3 cut(s) 4, 373, 438
DraIII CACNNNGTG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 2 cut(s) 207, 248
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 2 cut(s) 209, 250
Eco53kI GAGCTC 2 cut(s) 207, 248
Eco88I CYCGRG 1 cut(s) 470
EcoICRI GAGCTC 2 cut(s) 207, 248
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 2 cut(s) 209, 250
EgeI GGCGCC 2 cut(s) 30, 447
EheI GGCGCC 2 cut(s) 30, 447
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 2 cut(s) 371, 412
FaiI YATR 5 cut(s) 15, 362, 369, 401, 410
FatI CATG 2 cut(s) 367, 408
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 2 cut(s) 209, 250
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 1 cut(s) 63
GlaI GCGC 2 cut(s) 30, 447
GluI GCNGC 1 cut(s) 161
HaeII RGCGCY 2 cut(s) 32, 449
HaeIII GGCC 2 cut(s) 160, 332
HhaI GCGC 2 cut(s) 31, 448
Hin1I GRCGYC 2 cut(s) 29, 446
Hin1II CATG 2 cut(s) 371, 412
Hin6I GCGC 2 cut(s) 29, 446
HinP1I GCGC 2 cut(s) 29, 446
HinfI GANTC 3 cut(s) 41, 181, 346
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 111, 306
Hpy188III TCNNGA 4 cut(s) 173, 185, 355, 383
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 338
HpyF3I CTNAG 3 cut(s) 125, 303, 353
Hsp92I GRCGYC 2 cut(s) 29, 446
Hsp92II CATG 2 cut(s) 371, 412
HspAI GCGC 2 cut(s) 29, 446
KasI GGCGCC 2 cut(s) 28, 445
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 4, 373, 438
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 3 cut(s) 238, 245, 322
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 211, 388
MalI GATC 3 cut(s) 6, 375, 440
MboI GATC 3 cut(s) 4, 373, 438
MboII GAAGA 8 cut(s) 91, 94, 97, 100, 200, 289, 415, 453
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 209, 250
MluCI AATT 4 cut(s) 10, 46, 153, 416
Mly113I GGCGCC 2 cut(s) 29, 446
MlyI GAGTC 2 cut(s) 50, 340
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 7 cut(s) 279, 300, 312, 336, 390, 429, 474
MseI TTAA 1 cut(s) 131
MunI CAATTG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 307, 338
NarI GGCGCC 2 cut(s) 29, 446
NdeII GATC 3 cut(s) 4, 373, 438
NlaIII CATG 2 cut(s) 371, 412
NlaIV GGNNCC 3 cut(s) 6, 30, 447
NmuCI GTSAC 2 cut(s) 211, 388
PciSI GCTCTTC 1 cut(s) 83
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 2 cut(s) 49, 340
PluTI GGCGCC 2 cut(s) 32, 449
PpsI GAGTC 2 cut(s) 49, 340
Psp124BI GAGCTC 2 cut(s) 209, 250
PspN4I GGNNCC 3 cut(s) 6, 30, 447
PspPI GGNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 4
SacI GAGCTC 2 cut(s) 209, 250
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 4, 373, 438
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 2 cut(s) 50, 340
SduI GDGCHC 2 cut(s) 209, 250
SetI ASST 8 cut(s) 131, 209, 243, 250, 290, 327, 477, 485
SfoI GGCGCC 2 cut(s) 30, 447
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 4 cut(s) 10, 46, 153, 416
SsiI CCGC 1 cut(s) 161
SspDI GGCGCC 2 cut(s) 28, 445
SspMI CTAG 1 cut(s) 63
SstI GAGCTC 2 cut(s) 209, 250
StyI CCWWGG 1 cut(s) 260
TaqI TCGA 2 cut(s) 50, 479
TasI AATT 4 cut(s) 10, 46, 153, 416
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 2 cut(s) 211, 388
Tsp45I GTSAC 2 cut(s) 211, 388
TspDTI ATGAA 2 cut(s) 356, 397
TspRI CASTG 1 cut(s) 397
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.