Rroxscaffold_7G00214560

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001427
Physical Location & Seq
Forward (+)
65209412 .. 65210224
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214560.1

Sequence Viewer

Length: 495 bp
ATGACCCTCCGCTCCGCCCCACCTCCCAAACCCCCAAATCGCCACACCCATCGACCACGTATCTCTCTCGGCGCCTCAAGAACTCTCGGGGCCTTCGGCTTCACCGTCAAGGTGTTCTTGGCCCGTTCACGACATTCTTGGCCCGTTCTTGAAGATGAGAGAAATGTGAGTTCTGTGACGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCAATCTTTGCTTGAGAAGATTGTGAGGTTTCACATTATGCCTCGCAGGTTTACACACAGGGAGCTTTCGGCTTTGCCTCGCAAGGACTCGCTTAGGACTATGGTTCATGGTGATCAGCCTGCGGGAGTCACCGGGTTTACGAGTTTCATGCCGGAATTGGTCCTCAATGGAGTGAGGATCATGGCGCTCGACATCTATTCTTCGAACAACTTGGTTGTCCATGGGATTTCCCAAGCTTTCGAGGTGAATGATCTGCCTAATACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

164

Amino Acids

18.47

Weight (kDa)

11.22

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 12
AciI CCGC 3 cut(s) 10, 15, 347
AclWI GGATC 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 4 cut(s) 205, 212, 289, 461
AluI AGCT 4 cut(s) 205, 212, 289, 461
Alw21I GWGCWC 1 cut(s) 214
AlwI GGATC 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 3 cut(s) 90, 120, 140
AspLEI GCGC 2 cut(s) 74, 412
AspS9I GGNCC 4 cut(s) 90, 121, 141, 385
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 4 cut(s) 94, 346, 347, 481
AsuII TTCGAA 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 385
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 214
BccI CCATC 1 cut(s) 57
BcgI CGANNNNNNTGC 4 cut(s) 169, 203, 355, 389
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 358
BfoI RGCGCY 2 cut(s) 75, 413
BfuAI ACCTGC 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 4 cut(s) 90, 121, 141, 385
BmiI GGNNCC 2 cut(s) 73, 91
BmrFI CCNGG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 428
BpuEI CTTGAG 2 cut(s) 61, 257
BpuMI CCSGG 1 cut(s) 358
BsaAI YACGTR 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 445
BseGI GGATG 1 cut(s) 220
BshFI GGCC 3 cut(s) 92, 122, 142
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 357, 377
BsnI GGCC 3 cut(s) 92, 122, 142
BsoBI CYCGRG 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 3 cut(s) 337, 402, 475
Bsp19I CCATGG 1 cut(s) 445
BspACI CCGC 3 cut(s) 10, 15, 347
BspANI GGCC 3 cut(s) 92, 122, 142
BspLI GGNNCC 2 cut(s) 73, 91
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 1 cut(s) 410
BspT104I TTCGAA 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 445
BssMI GATC 3 cut(s) 337, 402, 475
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 445
BstF5I GGATG 1 cut(s) 220
BstH2I RGCGCY 2 cut(s) 75, 413
BstHHI GCGC 2 cut(s) 74, 412
BstKTI GATC 3 cut(s) 340, 405, 478
BstMBI GATC 3 cut(s) 337, 402, 475
BstSCI CCNGG 1 cut(s) 356
BsuRI GGCC 3 cut(s) 92, 122, 142
BtgI CCRYGG 1 cut(s) 445
BtsCI GGATG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 2 cut(s) 74, 412
Cfr13I GGNCC 4 cut(s) 90, 121, 141, 385
CspCI CAANNNNNGTGG 2 cut(s) 180, 215
CviAII CATG 4 cut(s) 332, 373, 406, 446
DdeI CTNAG 1 cut(s) 317
DinI GGCGCC 1 cut(s) 73
DpnI GATC 3 cut(s) 339, 404, 477
DpnII GATC 3 cut(s) 337, 402, 475
EciI GGCGGA 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 385
Eco53kI GAGCTC 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 214
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 4 cut(s) 335, 376, 409, 449
FaiI YATR 6 cut(s) 263, 326, 333, 374, 407, 447
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 4 cut(s) 331, 372, 405, 445
FauI CCCGC 1 cut(s) 340
FbaI TGATCA 1 cut(s) 337
FokI GGATG 1 cut(s) 207
FriOI GRGCYC 1 cut(s) 214
GlaI GCGC 2 cut(s) 73, 411
HaeII RGCGCY 2 cut(s) 75, 413
HaeIII GGCC 3 cut(s) 92, 122, 142
HapII CCGG 2 cut(s) 357, 377
HhaI GCGC 2 cut(s) 74, 412
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 4 cut(s) 335, 376, 409, 449
Hin6I GCGC 2 cut(s) 72, 410
HinP1I GCGC 2 cut(s) 72, 410
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 2 cut(s) 311, 351
HpaII CCGG 2 cut(s) 357, 377
HphI GGTGA 4 cut(s) 94, 346, 347, 481
Hpy166II GTNNAC 3 cut(s) 128, 276, 363
Hpy188III TCNNGA 3 cut(s) 78, 129, 149
Hpy8I GTNNAC 3 cut(s) 128, 276, 363
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 4 cut(s) 335, 376, 409, 449
HspAI GCGC 2 cut(s) 72, 410
KasI GGCGCC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 3 cut(s) 337, 402, 475
LmnI GCTCC 4 cut(s) 17, 202, 209, 286
LpnPI CCDG 5 cut(s) 256, 268, 357, 370, 390
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 175, 352
MalI GATC 3 cut(s) 339, 404, 477
MbiI CCGCTC 1 cut(s) 12
MboI GATC 3 cut(s) 337, 402, 475
MboII GAAGA 3 cut(s) 164, 253, 417
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 380
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 2 cut(s) 305, 360
MspI CCGG 2 cut(s) 357, 377
MspR9I CCNGG 1 cut(s) 358
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 1 cut(s) 358
NcoI CCATGG 1 cut(s) 445
NdeII GATC 3 cut(s) 337, 402, 475
NlaIII CATG 4 cut(s) 335, 376, 409, 449
NlaIV GGNNCC 2 cut(s) 73, 91
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 2 cut(s) 175, 352
NspV TTCGAA 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PleI GAGTC 2 cut(s) 305, 359
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 2 cut(s) 305, 359
Ppu21I YACGTR 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 73, 91
PspPI GGNCC 4 cut(s) 90, 121, 141, 385
SacI GAGCTC 1 cut(s) 214
Sau3AI GATC 3 cut(s) 337, 402, 475
Sau96I GGNCC 4 cut(s) 90, 121, 141, 385
SchI GAGTC 2 cut(s) 305, 360
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 1 cut(s) 214
SfoI GGCGCC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 428
SinI GGWCC 1 cut(s) 385
SmlI CTYRAG 2 cut(s) 76, 236
SmoI CTYRAG 2 cut(s) 76, 236
Sse9I AATT 1 cut(s) 380
SsiI CCGC 3 cut(s) 10, 15, 347
SspDI GGCGCC 1 cut(s) 71
SstI GAGCTC 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 61
TaqI TCGA 4 cut(s) 52, 414, 428, 465
TasI AATT 1 cut(s) 380
TseFI GTSAC 2 cut(s) 175, 352
Tsp45I GTSAC 2 cut(s) 175, 352
TspDTI ATGAA 2 cut(s) 320, 361
VpaK11BI GGWCC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.