Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Reverse (-)

82755458 .. 82756006

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG583800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGGAATCCTCAAGGTTCTTGCTTGCTGACTCTATACAGGCTCTATACAGGAAAAAGAACCTCGCCATCACGAGAATTGATCGGAAGAGTTGAACTATCCAGATCAACCAGGTTTGGGTCTCGCACCCGAATCTGTTTGTGGAAGGATCCTTTTCAATTCAAGGTGTTCTTGGCCCCTTCACGACGTTCTTGGCCCGTTCTTGAAGATGAGATAAATGTGAGCTCTGTGACGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCAATCTTTGCTTGAGAAAATTGTGAGGTTTCACATTGTGCCTCAGAGGTTTACACACAGGGAGCTTTTGGCTTTGCCTGCGAGGACTCTACTCAGAACTATGGTTCATGATGATCAGCCTCTGGGAGTCACTGGGTTTATGAGTTTCATGCCGGAATTGGTCCTCAATGGAGTGAGGATCATGGCGCTCAACATCTATTCTTCGAACAACTTGGTTGTCCATGGGATTTCCCGAACTTTCGAGGTGAATGATCTGCCTAATACCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

182

Amino Acids

20.85

Weight (kDa)

10.32

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	143, 156, 464
AdeI	CACNNNGTG	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	95, 158, 163, 206
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	4 cut(s)	225, 259, 266, 343
AluI	AGCT	4 cut(s)	225, 259, 266, 343
Alw21I	GWGCWC	2 cut(s)	227, 268
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	3 cut(s)	143, 156, 464
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	2 cut(s)	174, 194
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	3 cut(s)	175, 195, 439
AsuHPI	GGTGA	1 cut(s)	535
AsuII	TTCGAA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	439
BamHI	GGATCC	1 cut(s)	148
BanII	GRGCYC	2 cut(s)	227, 268
BauI	CACGAG	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	227, 268
BccI	CCATC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	3 cut(s)	175, 195, 439
BmiI	GGNNCC	2 cut(s)	150, 177
BmrFI	CCNGG	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	420
BmuI	ACTGGG	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	335, 385
BseNI	ACTGG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	176, 196
BsiHKAI	GWGCWC	2 cut(s)	227, 268
BsiSI	CCGG	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	176, 196
Bso31I	GGTCTC	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	227, 268
Bsp143I	GATC	6 cut(s)	81, 104, 148, 391, 456, 529
Bsp19I	CCATGG	1 cut(s)	499
BspANI	GGCC	2 cut(s)	176, 196
BspCNI	CTCAG	2 cut(s)	334, 384
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	150, 177
BspPI	GGATC	3 cut(s)	143, 156, 464
BspT104I	TTCGAA	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	6 cut(s)	81, 104, 148, 391, 456, 529
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	499
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	26, 357
BstDEI	CTNAG	2 cut(s)	321, 371
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	6 cut(s)	84, 107, 151, 394, 459, 532
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	6 cut(s)	81, 104, 148, 391, 456, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	176, 196
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	26, 357
CaiI	CAGNNNCTG	1 cut(s)	400
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	175, 195, 439
CsiI	ACCWGGT	1 cut(s)	110
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
CviAII	CATG	4 cut(s)	386, 427, 460, 500
CviJI	RGCY	9 cut(s)	43, 176, 196, 225, 259, 266, 343, 350, 397
CviKI_1	RGCY	9 cut(s)	43, 176, 196, 225, 259, 266, 343, 350, 397
DdeI	CTNAG	2 cut(s)	321, 371
DpnI	GATC	6 cut(s)	83, 106, 150, 393, 458, 531
DpnII	GATC	6 cut(s)	81, 104, 148, 391, 456, 529
DraIII	CACNNNGTG	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Ecl136II	GAGCTC	2 cut(s)	225, 266
Eco130I	CCWWGG	1 cut(s)	499
Eco24I	GRGCYC	2 cut(s)	227, 268
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	2 cut(s)	225, 266
EcoICRI	GAGCTC	2 cut(s)	225, 266
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	499
EcoT38I	GRGCYC	2 cut(s)	227, 268
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	4 cut(s)	389, 430, 463, 503
FaiI	YATR	8 cut(s)	37, 48, 380, 387, 419, 428, 461, 501
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	4 cut(s)	385, 426, 459, 499
FbaI	TGATCA	1 cut(s)	391
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	2 cut(s)	227, 268
GlaI	GCGC	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	176, 196
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	4 cut(s)	389, 430, 463, 503
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	5 cut(s)	7, 31, 132, 364, 405
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	86, 324, 374
Hpy188III	TCNNGA	6 cut(s)	72, 102, 183, 203, 386, 510
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	2 cut(s)	139, 189
HpyCH4IV	ACGT	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	321, 371
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	389, 430, 463, 503
HspAI	GCGC	1 cut(s)	464
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	81, 104, 148, 391, 456, 529
LmnI	GCTCC	3 cut(s)	256, 263, 340
MabI	ACCWGGT	1 cut(s)	110
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	229, 406
MalI	GATC	6 cut(s)	83, 106, 150, 393, 458, 531
MboI	GATC	6 cut(s)	81, 104, 148, 391, 456, 529
MboII	GAAGA	3 cut(s)	99, 218, 471
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	2 cut(s)	227, 268
MluCI	AATT	4 cut(s)	77, 158, 297, 434
MlyI	GAGTC	3 cut(s)	25, 358, 414
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	499
NdeII	GATC	6 cut(s)	81, 104, 148, 391, 456, 529
NlaIII	CATG	4 cut(s)	389, 430, 463, 503
NlaIV	GGNNCC	2 cut(s)	150, 177
NmuCI	GTSAC	2 cut(s)	229, 406
NspV	TTCGAA	1 cut(s)	482
PagI	TCATGA	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	7, 132
PleI	GAGTC	3 cut(s)	25, 358, 413
PpsI	GAGTC	3 cut(s)	25, 358, 413
Psp124BI	GAGCTC	2 cut(s)	227, 268
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	150, 177
PspPI	GGNCC	3 cut(s)	175, 195, 439
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	148
SacI	GAGCTC	2 cut(s)	227, 268
Sau3AI	GATC	6 cut(s)	81, 104, 148, 391, 456, 529
Sau96I	GGNCC	3 cut(s)	175, 195, 439
SchI	GAGTC	3 cut(s)	25, 358, 414
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	227, 268
SexAI	ACCWGGT	1 cut(s)	110
SfuI	TTCGAA	1 cut(s)	482
SinI	GGWCC	1 cut(s)	439
SmlI	CTYRAG	2 cut(s)	12, 290
SmoI	CTYRAG	2 cut(s)	12, 290
Sse9I	AATT	4 cut(s)	77, 158, 297, 434
SstI	GAGCTC	2 cut(s)	227, 268
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	499
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	482, 519
TasI	AATT	4 cut(s)	77, 158, 297, 434
TfiI	GAWTC	2 cut(s)	7, 132
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	2 cut(s)	229, 406
Tsp45I	GTSAC	2 cut(s)	229, 406
TspDTI	ATGAA	2 cut(s)	374, 415
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.