Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038508.1

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Forward (+)

980 .. 1600

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038508.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggcgtcttcttcttcttcctactgcacccgctggcacgccatactctactccaccatggccgtaatcctcgccgccatcgcaatctccatgaccctccgctccgaccccaccgcccaaaccccccaatccgccacacccatcagccacgtcatctctctcagcgcctcaagaactctccgcgcctccggcttcaccgtcaccgcggcgctcctccaaatctcgccggagctcttcctctcctccccgaactccaccatctttgcaatcgccgactcccacatctccaacgcctctctccctcctcacctcctcagagacctcctcaaataccacacctcgccgattagggtttcgatcgaggacctgatggagaagcctcaaggttcttgcttgccgactctgtaccggaaaaagaacgtcgcggttacaagaattgatcggaagaatcggacggtccagatcaaccgggtttgggtctcgcacccgaatctgtttctagaaggatccgtttcgattcacggcgttcttggcccgttcgccgctgtggatcccgaatatgacgtcattcacgcgcctgtgtgcgactccaattctagcgtcgtttctggttctggtgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

207

Amino Acids

22.27

Weight (kDa)

8.88

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	567
AccBSI	CCGCTC	1 cut(s)	102
AccII	CGCG	4 cut(s)	183, 206, 425, 575
AclWI	GGATC	4 cut(s)	501, 514, 545, 558
AcoI	YGGCCR	1 cut(s)	60
AcyI	GRCGYC	2 cut(s)	5, 564
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	475
AjiI	CACGTC	1 cut(s)	151
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	312, 484
AlwI	GGATC	4 cut(s)	501, 514, 545, 558
AoxI	GGCC	2 cut(s)	60, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
AspLEI	GCGC	4 cut(s)	167, 185, 211, 577
AspS9I	GGNCC	3 cut(s)	364, 457, 533
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	3 cut(s)	187, 193, 299
AvaII	GGWCC	2 cut(s)	364, 457
BamHI	GGATCC	2 cut(s)	506, 550
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	4 cut(s)	86, 149, 266, 364
BceAI	ACGGC	2 cut(s)	47, 538
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	312, 484
BfaI	CTAG	2 cut(s)	500, 597
BfoI	RGCGCY	2 cut(s)	168, 212
BisI	GCNGC	3 cut(s)	75, 207, 543
BlsI	GCNGC	3 cut(s)	76, 208, 544
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	364, 457
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	364, 457, 533
BmiI	GGNNCC	2 cut(s)	508, 552
BmrFI	CCNGG	1 cut(s)	470
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BpuEI	CTTGAG	2 cut(s)	154, 366
BpuMI	CCSGG	1 cut(s)	470
BsaHI	GRCGYC	2 cut(s)	5, 564
BsaI	GGTCTC	2 cut(s)	312, 484
BsaJI	CCNNGG	2 cut(s)	57, 204
BsaWI	WCCGGW	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
BseDI	CCNNGG	2 cut(s)	57, 204
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	175, 328
BseRI	GAGGAG	5 cut(s)	203, 232, 294, 302, 314
BsgI	GTGCAG	1 cut(s)	10
Bsh1236I	CGCG	4 cut(s)	183, 206, 425, 575
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	62, 534
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	4 cut(s)	189, 227, 409, 469
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	2 cut(s)	312, 484
BsnI	GGCC	2 cut(s)	62, 534
Bso31I	GGTCTC	2 cut(s)	312, 484
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	5 cut(s)	357, 439, 462, 506, 550
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	2 cut(s)	62, 534
BspCNI	CTCAG	2 cut(s)	174, 327
BspFNI	CGCG	4 cut(s)	183, 206, 425, 575
BspLI	GGNNCC	2 cut(s)	508, 552
BspPI	GGATC	4 cut(s)	501, 514, 545, 558
BspQI	GCTCTTC	1 cut(s)	239
BspTNI	GGTCTC	2 cut(s)	312, 484
BsrBI	CCGCTC	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	57, 204
BssMI	GATC	5 cut(s)	357, 439, 462, 506, 550
BssNI	GRCGYC	2 cut(s)	5, 564
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	199, 457
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	2 cut(s)	5, 564
BstC8I	GCNNGC	3 cut(s)	35, 39, 395
BstDEI	CTNAG	2 cut(s)	161, 314
BstDSI	CCRYGG	2 cut(s)	57, 204
BstFNI	CGCG	4 cut(s)	183, 206, 425, 575
BstH2I	RGCGCY	2 cut(s)	168, 212
BstHHI	GCGC	4 cut(s)	167, 185, 211, 577
BstKTI	GATC	5 cut(s)	360, 442, 465, 509, 553
BstMAI	GTCTC	2 cut(s)	312, 484
BstMBI	GATC	5 cut(s)	357, 439, 462, 506, 550
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 189, 531
BstSCI	CCNGG	1 cut(s)	468
BstUI	CGCG	4 cut(s)	183, 206, 425, 575
BstX2I	RGATCY	2 cut(s)	506, 550
BstYI	RGATCY	2 cut(s)	506, 550
BsuRI	GGCC	2 cut(s)	62, 534
BtgI	CCRYGG	2 cut(s)	57, 204
BtgZI	GCGATG	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	151
Cac8I	GCNNGC	3 cut(s)	35, 39, 395
CfoI	GCGC	4 cut(s)	167, 185, 211, 577
Cfr13I	GGNCC	3 cut(s)	364, 457, 533
Cfr42I	CCGCGG	1 cut(s)	207
CseI	GACGC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	406
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	2 cut(s)	58, 91
CviJI	RGCY	6 cut(s)	62, 147, 192, 232, 379, 534
CviKI_1	RGCY	6 cut(s)	62, 147, 192, 232, 379, 534
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	161, 314
DpnI	GATC	5 cut(s)	359, 441, 464, 508, 552
DpnII	GATC	5 cut(s)	357, 439, 462, 506, 550
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	2 cut(s)	312, 484
Eco47I	GGWCC	2 cut(s)	364, 457
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	61, 94
FaiI	YATR	4 cut(s)	44, 59, 92, 561
FatI	CATG	2 cut(s)	57, 90
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	3 cut(s)	75, 207, 543
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	75, 207, 543
FspBI	CTAG	2 cut(s)	500, 597
GlaI	GCGC	4 cut(s)	166, 184, 210, 576
GluI	GCNGC	3 cut(s)	75, 207, 543
HaeII	RGCGCY	2 cut(s)	168, 212
HaeIII	GGCC	2 cut(s)	62, 534
HapII	CCGG	4 cut(s)	189, 227, 409, 469
HgaI	GACGC	1 cut(s)	589
HhaI	GCGC	4 cut(s)	167, 185, 211, 577
Hin1I	GRCGYC	2 cut(s)	5, 564
Hin1II	CATG	2 cut(s)	61, 94
Hin6I	GCGC	4 cut(s)	165, 183, 209, 575
HinP1I	GCGC	4 cut(s)	165, 183, 209, 575
HinfI	GANTC	6 cut(s)	275, 400, 448, 490, 517, 587
HpaII	CCGG	4 cut(s)	189, 227, 409, 469
HphI	GGTGA	3 cut(s)	187, 193, 299
Hpy188I	TCNGA	4 cut(s)	106, 317, 444, 453
Hpy188III	TCNNGA	4 cut(s)	171, 460, 500, 554
Hpy99I	CGWCG	2 cut(s)	425, 605
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	2 cut(s)	199, 457
HpyCH4IV	ACGT	3 cut(s)	150, 420, 564
HpyCH4V	TGCA	2 cut(s)	27, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 189, 531
HpyF3I	CTNAG	2 cut(s)	161, 314
HpySE526I	ACGT	3 cut(s)	150, 420, 564
Hsp92I	GRCGYC	2 cut(s)	5, 564
Hsp92II	CATG	2 cut(s)	61, 94
HspAI	GCGC	4 cut(s)	165, 183, 209, 575
KspI	CCGCGG	1 cut(s)	207
Kzo9I	GATC	5 cut(s)	357, 439, 462, 506, 550
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	3 cut(s)	107, 216, 229
MaeI	CTAG	2 cut(s)	500, 597
MaeII	ACGT	3 cut(s)	150, 420, 564
MaeIII	GTNAC	2 cut(s)	199, 427
MalI	GATC	5 cut(s)	359, 441, 464, 508, 552
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	5 cut(s)	357, 439, 462, 506, 550
MboII	GAAGA	5 cut(s)	3, 6, 9, 226, 457
MflI	RGATCY	2 cut(s)	506, 550
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	2 cut(s)	435, 592
MlyI	GAGTC	3 cut(s)	269, 394, 581
MmeI	TCCRAC	2 cut(s)	129, 312
MspA1I	CMGCKG	3 cut(s)	33, 206, 545
MspI	CCGG	4 cut(s)	189, 227, 409, 469
MspR9I	CCNGG	1 cut(s)	470
MvnI	CGCG	4 cut(s)	183, 206, 425, 575
MwoI	GCNNNNNNNGC	3 cut(s)	80, 189, 531
NciI	CCSGG	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	5 cut(s)	357, 439, 462, 506, 550
NlaIII	CATG	2 cut(s)	61, 94
NlaIV	GGNNCC	2 cut(s)	508, 552
NmuCI	GTSAC	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	448, 490, 517
PkrI	GCNGC	3 cut(s)	76, 208, 544
Ple19I	CGATCG	1 cut(s)	360
PleI	GAGTC	3 cut(s)	269, 394, 581
PpsI	GAGTC	3 cut(s)	269, 394, 581
PpuMI	RGGWCCY	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	508, 552
PspPI	GGNCC	3 cut(s)	364, 457, 533
PspPPI	RGGWCCY	1 cut(s)	364
PsuI	RGATCY	2 cut(s)	506, 550
PvuI	CGATCG	1 cut(s)	360
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	234
SacII	CCGCGG	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	239
SatI	GCNGC	3 cut(s)	75, 207, 543
Sau3AI	GATC	5 cut(s)	357, 439, 462, 506, 550
Sau96I	GGNCC	3 cut(s)	364, 457, 533
SchI	GAGTC	3 cut(s)	269, 394, 581
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	9 cut(s)	153, 234, 312, 324, 341, 369, 388, 423, 567
Sfr303I	CCGCGG	1 cut(s)	207
SgrBI	CCGCGG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	364, 457
SmlI	CTYRAG	2 cut(s)	169, 381
SmoI	CTYRAG	2 cut(s)	169, 381
Sse9I	AATT	2 cut(s)	435, 592
SspMI	CTAG	2 cut(s)	500, 597
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	199, 457
TaiI	ACGT	3 cut(s)	153, 423, 567
TaqI	TCGA	3 cut(s)	356, 360, 515
TasI	AATT	2 cut(s)	435, 592
TauI	GCSGC	3 cut(s)	77, 209, 545
TfiI	GAWTC	3 cut(s)	448, 490, 517
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	364, 457
XbaI	TCTAGA	1 cut(s)	499
XspI	CTAG	2 cut(s)	500, 597
ZraI	GACGTC	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.