AT5G06920

FASCICLIN-like arabinogalactan protein 21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001427
Physical Location & Seq
Forward (+)
2142858 .. 2143919
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06920.1

Sequence Viewer

Length: 1062 bp
ATGGGTTGTTGTTCATCAGATTGCTTCGTCTACTTCATCCTCTCCATTGCTTTAGCTTTCATGGCCATCTCCACCACTCTACGTTCACCTCCGGATTCCGAACCCACAATACCCATTGCTTTTTCTTCCTCTTCGCCTTCTCTCTCTTTAAACGCCTCAAACACTCTACGGCAATCTAATTTCAAAGCAATAGCCACTCTTCTCCACATCTCCCCTGAGATCTTCCTCTCTTCTTCTCCCAACACAACCCTCTTTGCCATCGAAGATGCTTCCTTCTTCAACACGTCATCGCTTCATCCTTTGTTTCTCAAGCAGCTTCTTCACTATCACACACTCCCTCTTATGCTTTCGATGGATGACCTTCTCAAGAAGCCTCAAGGAACCTGTCTCCCAACGCTTCTCCACCACAAGAGTGTCCAAATATCCACTGTTAATCAAGAATCAAGAACAGCTGAAGTCAATCATGTCCGTATCACACACCCCGACATGTTTCTTGGAGATTCATTGGTCATTCACGGAGTTATTGGACCATTCTCTCCTCTGCAACCTCACAGTGATCATCTTATCCACACACCTTTATGTCAATCTGATACAACAAACAAAACCAGTAACAACGAAGAAGTTCCAGTTAGCATAGACTGGACTCGGATTGTTCAGCTTCTAAGTTCAAATGGGTTTGTGCCATTTGCAATTGGATTGCACTCTGTTCTCAACAGGATTGTGAACGATCATAATCATCACAAGAACTTGACCGGTGTAACGATTCTAGCTACACCGAATCTGGTCTCATTGTCATCTGCTTCTCCGTTTTTGTATGAAGTTGTGAGACATCACATTCTTGTTCAACGGCTTACATACAAAGATTTTGCTTCAATGTCTGATAAAGCCACAGTGAAGACATTGGATCCTTACCAAGATCTTACAATCACGAGAAGAAATGTTAATTCGTCTGGAGGAGATTTCATGATTTCTGGAGTTGAGATTGTAGATCCAGATATGTTCTCTTCTTCCAACTTTGTAATTCATGGAATATCACACACTCTAGAGATCCCACATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

353

Amino Acids

38.9

Weight (kDa)

6.2

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AccIII TCCGGA 1 cut(s) 91
AclWI GGATC 4 cut(s) 899, 912, 983, 1042
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 474
AflIII ACRYGT 3 cut(s) 282, 486, 1054
AgeI ACCGGT 1 cut(s) 752
AgsI TTSAA 5 cut(s) 184, 280, 669, 845, 873
AjiI CACGTC 1 cut(s) 285
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 5 cut(s) 56, 316, 452, 658, 770
AluI AGCT 5 cut(s) 56, 316, 452, 658, 770
Alw26I GTCTC 3 cut(s) 392, 790, 820
AlwI GGATC 4 cut(s) 899, 912, 983, 1042
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 313
AsiGI ACCGGT 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 621
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 78
AvaII GGWCC 1 cut(s) 527
BalI TGGCCA 1 cut(s) 65
BamHI GGATCC 1 cut(s) 904
BauI CACGAG 1 cut(s) 928
BbsI GAAGAC 1 cut(s) 902
BbvI GCAGC 1 cut(s) 325
BccI CCATC 3 cut(s) 74, 266, 346
BceAI ACGGC 2 cut(s) 185, 863
BclI TGATCA 1 cut(s) 556
BcoDI GTCTC 3 cut(s) 392, 790, 820
BfaI CTAG 2 cut(s) 767, 1043
BglII AGATCT 2 cut(s) 219, 916
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 527
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 2 cut(s) 382, 906
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 902
BpmI CTGGAG 2 cut(s) 972, 993
BpuEI CTTGAG 3 cut(s) 293, 350, 360
BsaBI GATNNNNATC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 790
BsaWI WCCGGW 2 cut(s) 91, 752
Bse118I RCCGGY 1 cut(s) 752
Bse1I ACTGG 3 cut(s) 606, 626, 644
Bse3DI GCAATG 2 cut(s) 45, 114
Bse8I GATNNNNATC 1 cut(s) 732
BseAI TCCGGA 1 cut(s) 91
BseGI GGATG 3 cut(s) 36, 295, 361
BseJI GATNNNNATC 1 cut(s) 732
BseMI GCAATG 2 cut(s) 45, 114
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 3 cut(s) 606, 626, 644
BseRI GAGGAG 2 cut(s) 528, 969
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 752
BsiSI CCGG 2 cut(s) 92, 753
BsmAI GTCTC 3 cut(s) 392, 790, 820
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 790
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 7 cut(s) 219, 556, 727, 904, 916, 988, 1047
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 208
BspEI TCCGGA 1 cut(s) 91
BspHI TCATGA 1 cut(s) 963
BspLI GGNNCC 2 cut(s) 382, 906
BspPI GGATC 4 cut(s) 899, 912, 983, 1042
BspTNI GGTCTC 1 cut(s) 790
BsrDI GCAATG 2 cut(s) 45, 114
BsrFI RCCGGY 1 cut(s) 752
BsrI ACTGG 3 cut(s) 606, 626, 644
BssAI RCCGGY 1 cut(s) 752
BssMI GATC 7 cut(s) 219, 556, 727, 904, 916, 988, 1047
BssSI CACGAG 1 cut(s) 928
Bst2BI CACGAG 1 cut(s) 928
Bst4CI ACNGT 3 cut(s) 430, 554, 892
Bst6I CTCTTC 4 cut(s) 136, 204, 235, 1009
BstDEI CTNAG 2 cut(s) 216, 662
BstF5I GGATG 3 cut(s) 36, 295, 361
BstKTI GATC 7 cut(s) 222, 559, 730, 907, 919, 991, 1050
BstMAI GTCTC 3 cut(s) 392, 790, 820
BstMBI GATC 7 cut(s) 219, 556, 727, 904, 916, 988, 1047
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 2 cut(s) 490, 1058
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 902
BstX2I RGATCY 5 cut(s) 219, 904, 916, 988, 1047
BstYI RGATCY 5 cut(s) 219, 904, 916, 988, 1047
BsuRI GGCC 1 cut(s) 65
BtgZI GCGATG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 3 cut(s) 36, 295, 361
BtsIMutI CAGTG 3 cut(s) 426, 559, 897
CciI TCATGA 1 cut(s) 963
Cfr10I RCCGGY 1 cut(s) 752
Cfr13I GGNCC 1 cut(s) 527
CspAI ACCGGT 1 cut(s) 752
CviAII CATG 6 cut(s) 61, 464, 487, 964, 1025, 1055
DdeI CTNAG 2 cut(s) 216, 662
DpnI GATC 7 cut(s) 221, 558, 729, 906, 918, 990, 1049
DpnII GATC 7 cut(s) 219, 556, 727, 904, 916, 988, 1047
DraI TTTAAA 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 4 cut(s) 136, 204, 235, 1009
EarI CTCTTC 4 cut(s) 136, 204, 235, 1009
Eco31I GGTCTC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 474
FaeI CATG 6 cut(s) 64, 467, 490, 967, 1028, 1058
FatI CATG 6 cut(s) 60, 463, 486, 963, 1024, 1054
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 3 cut(s) 23, 282, 368
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 2 cut(s) 767, 1043
GluI GCNGC 1 cut(s) 314
GsuI CTGGAG 2 cut(s) 972, 993
HaeIII GGCC 1 cut(s) 65
HapII CCGG 2 cut(s) 92, 753
Hin1II CATG 6 cut(s) 64, 467, 490, 967, 1028, 1058
HinfI GANTC 6 cut(s) 95, 440, 500, 643, 763, 778
HpaII CCGG 2 cut(s) 92, 753
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 3 cut(s) 31, 86, 724
Hpy188I TCNGA 5 cut(s) 19, 100, 589, 648, 880
Hpy8I GTNNAC 3 cut(s) 31, 86, 724
HpyAV CCTTC 3 cut(s) 147, 283, 371
HpyCH4III ACNGT 3 cut(s) 430, 554, 892
HpyCH4IV ACGT 2 cut(s) 82, 284
HpyCH4V TGCA 3 cut(s) 544, 689, 700
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 216, 662
HpySE526I ACGT 2 cut(s) 82, 284
Hsp92II CATG 6 cut(s) 64, 467, 490, 967, 1028, 1058
Kpn2I TCCGGA 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 7 cut(s) 219, 556, 727, 904, 916, 988, 1047
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 767, 1043
MaeII ACGT 2 cut(s) 82, 284
MaeIII GTNAC 2 cut(s) 608, 757
MalI GATC 7 cut(s) 221, 558, 729, 906, 918, 990, 1049
MboI GATC 7 cut(s) 219, 556, 727, 904, 916, 988, 1047
MfeI CAATTG 1 cut(s) 690
MflI RGATCY 5 cut(s) 219, 904, 916, 988, 1047
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 4 cut(s) 178, 690, 943, 1020
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 637
MmeI TCCRAC 1 cut(s) 1035
Mox20I TGGCCA 1 cut(s) 65
MroI TCCGGA 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 621
MscI TGGCCA 1 cut(s) 65
MseI TTAA 3 cut(s) 149, 432, 942
MslI CAYNNNNRTG 2 cut(s) 411, 577
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 2 cut(s) 92, 753
MunI CAATTG 1 cut(s) 690
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 7 cut(s) 219, 556, 727, 904, 916, 988, 1047
NlaIII CATG 6 cut(s) 64, 467, 490, 967, 1028, 1058
NlaIV GGNNCC 2 cut(s) 382, 906
NspI RCATGY 2 cut(s) 490, 1058
OliI CACNNNNGTG 1 cut(s) 411
PagI TCATGA 1 cut(s) 963
PciI ACATGT 2 cut(s) 486, 1054
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 5 cut(s) 95, 440, 500, 763, 778
PinAI ACCGGT 1 cut(s) 752
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
PscI ACATGT 2 cut(s) 486, 1054
PspN4I GGNNCC 2 cut(s) 382, 906
PspPI GGNCC 1 cut(s) 527
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PsuI RGATCY 5 cut(s) 219, 904, 916, 988, 1047
PvuII CAGCTG 1 cut(s) 452
RseI CAYNNNNRTG 2 cut(s) 411, 577
SaqAI TTAA 3 cut(s) 149, 432, 942
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 7 cut(s) 219, 556, 727, 904, 916, 988, 1047
Sau96I GGNCC 1 cut(s) 527
SchI GAGTC 1 cut(s) 637
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 2 cut(s) 411, 577
SmlI CTYRAG 3 cut(s) 308, 365, 375
SmoI CTYRAG 3 cut(s) 308, 365, 375
Sse9I AATT 4 cut(s) 178, 690, 943, 1020
SspMI CTAG 2 cut(s) 767, 1043
TaaI ACNGT 3 cut(s) 430, 554, 892
TaiI ACGT 2 cut(s) 85, 287
TaqI TCGA 2 cut(s) 261, 350
TasI AATT 4 cut(s) 178, 690, 943, 1020
TfiI GAWTC 5 cut(s) 95, 440, 500, 763, 778
Tru1I TTAA 3 cut(s) 149, 432, 942
Tru9I TTAA 3 cut(s) 149, 432, 942
TscAI CASTG 3 cut(s) 433, 559, 897
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 7 cut(s) 25, 49, 284, 492, 831, 952, 1013
TspGWI ACGGA 3 cut(s) 458, 531, 795
TspRI CASTG 3 cut(s) 433, 559, 897
VpaK11BI GGWCC 1 cut(s) 527
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 2 cut(s) 490, 1058
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 2 cut(s) 767, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.