Rorug04G0007500

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000839
Physical Location & Seq
Reverse (-)
1318867 .. 1323338
4472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0007500.1

Sequence Viewer

Length: 1119 bp
ATGGATTCGCTCGCACGATTCGTCTGCTTCTATCTGCTCACAGTTACCTCCTTCTTCTTCTCGCAGGCTAGGGCCCAAGGTACTGCTTCCGTCTTCTTTATCGATAGCTCCACTCATCAATTTCTTCGCAGCAACGATGTCGTCAAGCCTGACTCAATGTCGCTACCAGAAGTCAGTGCTGCCGTGTCTGTCTTGCTTGGATTTGCGCCGCCTGCTTCACTCTCAGCTGCTGGTTCATCTAAGTTAAATGAGGTTCTTGTGCCCAATCCATTTAATAGACCTCGCGCTGTTTTCGTGCTGGAAGTCAGAGGAATTGCTGATCCTACTCTTGTTGTCAAACAAAATTCCATGTTTAAAAGTGCTTATGAAACCAAGATTGACCTTGGCTTGAAGAAAGCTGAGATTGAGCTTCCTGATGAAAGTGAAGTATCTGTGTTTTCTTTGGATGAGCAATCGGCAGACTATAATGACAATGAAATCAGAAATTTTGCCTCTTGGATGGGCGGATCATATGTTCCTGATACATTGGAAGCGCTAAACGGAGAGTTGGCCATCCCCTTGGCCAATGGTGATCAGTTGAAGCTTCATATGTCCAAGGAAGCAGACAGGAAATTCATTATTAGCCTTTTGGCGCTCATCCGCAATTTTAGAAGGGCAATGGAGTTGCATGAAGATTTGTTGCATAGTATCCACAGTCCAGCTGAGCTATTAACAGGCAGTTTTGATGGCATCAAGGTTTTAGAAGAGCAGTATGGATCTGACGGTGTTGCTCAACATGGAATGGAAGTGCTAGTTGCTGTAATGACTAAGATATTTGATTTACTCGAACATGCGTACAAAGGTCAAATTGTTGGAGCTATCCTCTTTGATGGAGTAGCACCTGTTGAATCAGGGAAGATGTTGAATGTGGTGTTTACCAGTCGACCATCTTCTCGTTGGCTGGCAGAAACAAAGACCCCAACAAATACAACTGTTGTGGAAGTGCTATTGGTTAGAAAAACAATTGCTTGGATCACAGGAATTATCCTTCTCATTGCAACTCTCTTGGGGGTACACTTCCTTCTGAATATGCCAATCACCAGGGATACATTACTGTACTCTAATGTCAAGCTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

372

Amino Acids

40.93

Weight (kDa)

5.27

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7794 PF25070 28 - 290 1.2e-120 Domain of unknown function (DUF7794)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 922
AccII CGCG 1 cut(s) 285
AciI CCGC 3 cut(s) 209, 504, 640
AclWI GGATC 4 cut(s) 314, 514, 763, 1019
AcoI YGGCCR 2 cut(s) 549, 561
AcsI RAATTY 3 cut(s) 343, 484, 611
AfaI GTAC 4 cut(s) 82, 836, 1053, 1097
AfeI AGCGCT 1 cut(s) 534
AgsI TTSAA 4 cut(s) 391, 580, 887, 904
AhdI GACNNNNNGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 1079
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 9 cut(s) 108, 227, 398, 409, 583, 701, 706, 857, 1111
AluI AGCT 9 cut(s) 108, 227, 398, 409, 583, 701, 706, 857, 1111
AlwI GGATC 4 cut(s) 314, 514, 763, 1019
AlwNI CAGNNNCTG 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 534
AoxI GGCC 3 cut(s) 72, 549, 561
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 3 cut(s) 129, 179, 227
ApoI RAATTY 3 cut(s) 343, 484, 611
AspLEI GCGC 4 cut(s) 208, 287, 535, 634
AspS9I GGNCC 2 cut(s) 72, 73
AsuHPI GGTGA 2 cut(s) 581, 1069
BaeGI GKGCMC 2 cut(s) 76, 264
BalI TGGCCA 2 cut(s) 551, 563
BanII GRGCYC 1 cut(s) 76
BarI GAAGNNNNNNTAC 2 cut(s) 1044, 1076
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 3 cut(s) 141, 166, 214
BccI CCATC 5 cut(s) 493, 560, 719, 863, 934
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 4 cut(s) 6, 40, 121, 155
BciT130I CCWGG 1 cut(s) 1081
BciVI GTATCC 2 cut(s) 698, 1078
BclI TGATCA 1 cut(s) 571
BfaI CTAG 3 cut(s) 69, 791, 1117
BfoI RGCGCY 2 cut(s) 536, 635
BfuI GTATCC 2 cut(s) 698, 1078
BisI GCNGC 4 cut(s) 130, 180, 209, 228
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 4 cut(s) 131, 181, 210, 229
Bme1390I CCNGG 1 cut(s) 1081
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 72, 73
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 1081
BmsI GCATC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 85
BplI GAGNNNNNCTC 2 cut(s) 846, 878
Bpu1102I GCTNAGC 1 cut(s) 702
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 5 cut(s) 76, 382, 558, 594, 1080
Bse1I ACTGG 1 cut(s) 918
Bse3DI GCAATG 2 cut(s) 663, 1032
BseBI CCWGG 1 cut(s) 1081
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 5 cut(s) 76, 382, 558, 594, 1080
BseGI GGATG 4 cut(s) 451, 504, 552, 636
BseMI GCAATG 2 cut(s) 663, 1032
BseMII CTCAG 3 cut(s) 237, 390, 693
BseNI ACTGG 1 cut(s) 918
BseSI GKGCMC 2 cut(s) 76, 264
BseXI GCAGC 3 cut(s) 141, 166, 214
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 3 cut(s) 74, 551, 563
BshVI ATCGAT 1 cut(s) 102
BsnI GGCC 3 cut(s) 74, 551, 563
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 76, 264
Bsp143I GATC 5 cut(s) 319, 506, 571, 755, 1011
Bsp1720I GCTNAGC 1 cut(s) 702
BspACI CCGC 3 cut(s) 209, 504, 640
BspANI GGCC 3 cut(s) 74, 551, 563
BspCNI CTCAG 3 cut(s) 236, 391, 694
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 74
BspPI GGATC 4 cut(s) 314, 514, 763, 1019
BspQI GCTCTTC 1 cut(s) 738
BsrDI GCAATG 2 cut(s) 663, 1032
BsrI ACTGG 1 cut(s) 918
BssECI CCNNGG 5 cut(s) 76, 382, 558, 594, 1080
BssMI GATC 5 cut(s) 319, 506, 571, 755, 1011
BssT1I CCWWGG 4 cut(s) 76, 382, 558, 594
Bst2UI CCWGG 1 cut(s) 1081
Bst4CI ACNGT 5 cut(s) 43, 695, 764, 973, 1095
Bst6I CTCTTC 1 cut(s) 738
BstC8I GCNNGC 4 cut(s) 12, 66, 213, 942
BstDEI CTNAG 5 cut(s) 223, 240, 399, 702, 807
BstF5I GGATG 4 cut(s) 451, 504, 552, 636
BstFNI CGCG 1 cut(s) 285
BstH2I RGCGCY 2 cut(s) 536, 635
BstHHI GCGC 4 cut(s) 208, 287, 535, 634
BstKTI GATC 5 cut(s) 322, 509, 574, 758, 1014
BstMBI GATC 5 cut(s) 319, 506, 571, 755, 1011
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 1081
BstNSI RCATGY 1 cut(s) 833
BstSCI CCNGG 1 cut(s) 1079
BstSLI GKGCMC 2 cut(s) 76, 264
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 141, 166, 214
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 755
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 1 cut(s) 755
Bsu15I ATCGAT 1 cut(s) 102
BsuI GTATCC 2 cut(s) 698, 1078
BsuRI GGCC 3 cut(s) 74, 551, 563
BsuTUI ATCGAT 1 cut(s) 102
BtsCI GGATG 4 cut(s) 451, 504, 552, 636
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 4 cut(s) 12, 66, 213, 942
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 4 cut(s) 208, 287, 535, 634
Cfr13I GGNCC 2 cut(s) 72, 73
ClaI ATCGAT 1 cut(s) 102
Csp6I GTAC 4 cut(s) 81, 835, 1052, 1096
CspCI CAANNNNNGTGG 2 cut(s) 957, 992
CviAII CATG 4 cut(s) 349, 668, 776, 830
CviQI GTAC 4 cut(s) 81, 835, 1052, 1096
DdeI CTNAG 5 cut(s) 223, 240, 399, 702, 807
DpnI GATC 5 cut(s) 321, 508, 573, 757, 1013
DpnII GATC 5 cut(s) 319, 506, 571, 755, 1011
DraI TTTAAA 1 cut(s) 355
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 549, 561
Eam1104I CTCTTC 1 cut(s) 738
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 738
EciI GGCGGA 1 cut(s) 519
Eco130I CCWWGG 4 cut(s) 76, 382, 558, 594
Eco24I GRGCYC 1 cut(s) 76
Eco47III AGCGCT 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 1079
EcoT14I CCWWGG 4 cut(s) 76, 382, 558, 594
EcoT38I GRGCYC 1 cut(s) 76
ErhI CCWWGG 4 cut(s) 76, 382, 558, 594
FaeI CATG 4 cut(s) 352, 671, 779, 833
FatI CATG 4 cut(s) 348, 667, 775, 829
FauNDI CATATG 2 cut(s) 511, 588
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 1 cut(s) 922
Fnu4HI GCNGC 4 cut(s) 130, 180, 209, 228
FokI GGATG 4 cut(s) 458, 511, 539, 623
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 4 cut(s) 130, 180, 209, 228
FspBI CTAG 3 cut(s) 69, 791, 1117
GlaI GCGC 4 cut(s) 207, 286, 534, 633
GluI GCNGC 4 cut(s) 130, 180, 209, 228
HaeII RGCGCY 2 cut(s) 536, 635
HaeIII GGCC 3 cut(s) 74, 551, 563
HhaI GCGC 4 cut(s) 208, 287, 535, 634
Hin1II CATG 4 cut(s) 352, 671, 779, 833
Hin6I GCGC 4 cut(s) 206, 285, 533, 632
HinP1I GCGC 4 cut(s) 206, 285, 533, 632
HincII GTYRAC 1 cut(s) 923
HindII GTYRAC 1 cut(s) 923
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 4 cut(s) 5, 18, 152, 887
HphI GGTGA 2 cut(s) 581, 1069
Hpy166II GTNNAC 3 cut(s) 915, 923, 1054
Hpy188I TCNGA 4 cut(s) 308, 482, 760, 1065
Hpy188III TCNNGA 2 cut(s) 413, 518
Hpy8I GTNNAC 3 cut(s) 915, 923, 1054
HpyAV CCTTC 4 cut(s) 61, 645, 1037, 1070
HpyCH4III ACNGT 5 cut(s) 43, 695, 764, 973, 1095
HpyCH4V TGCA 3 cut(s) 667, 682, 1037
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 5 cut(s) 223, 240, 399, 702, 807
Hsp92II CATG 4 cut(s) 352, 671, 779, 833
HspAI GCGC 4 cut(s) 206, 285, 533, 632
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 5 cut(s) 319, 506, 571, 755, 1011
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 2 cut(s) 113, 854
Lsp1109I GCAGC 3 cut(s) 141, 166, 214
LweI GCATC 1 cut(s) 738
MaeI CTAG 3 cut(s) 69, 791, 1117
MaeIII GTNAC 1 cut(s) 43
MalI GATC 5 cut(s) 321, 508, 573, 757, 1013
MboI GATC 5 cut(s) 319, 506, 571, 755, 1011
MboII GAAGA 9 cut(s) 46, 49, 85, 116, 403, 683, 755, 907, 921
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 1 cut(s) 755
MhlI GDGCHC 2 cut(s) 76, 264
MlsI TGGCCA 2 cut(s) 551, 563
MluCI AATT 9 cut(s) 119, 312, 343, 484, 611, 643, 846, 1002, 1020
MluNI TGGCCA 2 cut(s) 551, 563
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 832
MnlI CCTC 6 cut(s) 58, 244, 291, 302, 502, 872
Mox20I TGGCCA 2 cut(s) 551, 563
MscI TGGCCA 2 cut(s) 551, 563
MseI TTAA 4 cut(s) 245, 273, 354, 710
Msp20I TGGCCA 2 cut(s) 551, 563
MspA1I CMGCKG 2 cut(s) 227, 701
MspR9I CCNGG 1 cut(s) 1081
MunI CAATTG 1 cut(s) 1002
MvaI CCWGG 1 cut(s) 1081
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeI CATATG 2 cut(s) 511, 588
NdeII GATC 5 cut(s) 319, 506, 571, 755, 1011
NlaIII CATG 4 cut(s) 352, 671, 779, 833
NlaIV GGNNCC 1 cut(s) 74
NspI RCATGY 1 cut(s) 833
PciSI GCTCTTC 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 3 cut(s) 5, 18, 887
PkrI GCNGC 4 cut(s) 131, 181, 210, 229
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 1079
PspGI CCWGG 1 cut(s) 1079
PspN4I GGNNCC 1 cut(s) 74
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 2 cut(s) 72, 73
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 755
PvuII CAGCTG 2 cut(s) 227, 701
RsaI GTAC 4 cut(s) 82, 836, 1053, 1097
RsaNI GTAC 4 cut(s) 81, 835, 1052, 1096
SalI GTCGAC 1 cut(s) 921
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 4 cut(s) 245, 273, 354, 710
SatI GCNGC 4 cut(s) 130, 180, 209, 228
Sau3AI GATC 5 cut(s) 319, 506, 571, 755, 1011
Sau96I GGNCC 2 cut(s) 72, 73
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 1081
SduI GDGCHC 2 cut(s) 76, 264
SfaNI GCATC 1 cut(s) 738
Sse9I AATT 9 cut(s) 119, 312, 343, 484, 611, 643, 846, 1002, 1020
SsiI CCGC 3 cut(s) 209, 504, 640
SspMI CTAG 3 cut(s) 69, 791, 1117
StyD4I CCNGG 1 cut(s) 1079
StyI CCWWGG 4 cut(s) 76, 382, 558, 594
TaaI ACNGT 5 cut(s) 43, 695, 764, 973, 1095
TaqI TCGA 3 cut(s) 102, 825, 922
TasI AATT 9 cut(s) 119, 312, 343, 484, 611, 643, 846, 1002, 1020
TatI WGTACW 1 cut(s) 1095
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 3 cut(s) 5, 18, 887
Tru1I TTAA 4 cut(s) 245, 273, 354, 710
Tru9I TTAA 4 cut(s) 245, 273, 354, 710
TscAI CASTG 1 cut(s) 181
TseI GCWGC 3 cut(s) 129, 179, 227
TspDTI ATGAA 7 cut(s) 225, 381, 432, 489, 575, 604, 684
TspGWI ACGGA 2 cut(s) 79, 555
TspRI CASTG 1 cut(s) 181
XapI RAATTY 3 cut(s) 343, 484, 611
XceI RCATGY 1 cut(s) 833
XcmI CCANNNNNNNNNTGG 1 cut(s) 933
XmiI GTMKAC 1 cut(s) 922
XspI CTAG 3 cut(s) 69, 791, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.