RchiOBHm_Chr4g0398311

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000839
Physical Location & Seq
Reverse (-)
14823928 .. 14829830
5903 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37049

Sequence Viewer

Length: 1413 bp
ATGGGTTTCTGCCATATTATTATGTTGGCTTTCACGTCTTTCACCCTGACATTTAGTGCTTCAGCTTCAAACTGGACCATCATCAAAACTCTACCAGGTTATTCTGGTGATCTTCTTTTCGCTTTAGAATCTGGATATATTGGTGTAGGAGACGATGAAGAAGTGCAGCTGTTTTACTATTTTATCGAGTCTCAGAGGAACCCTGCACAAGATCCTCTGCTGTATTGGATCACTGGAGGCCCTGGTTGCTCTAGTCTTGCTGGATTTTTCTTTGAGAGTGGTCCATTGGTTTTCAACTACAAAGATTACAATGGAAGCCTACCAACACTTCAGGACAATCCTTATGCATGGACACAGGGACTCAACATCATATACTTGGATGCACCAGTTGGTGCCGGATACTCCTACTCAGAAACCCAAAGTGGTTATGTTATGGATGACTATAAATTTGTGGCTCAAATTTATGAATTTCTGCAAAAGTGGCTAGAGGCACACCCGACATATTTGGAAAATCTACTCTATATTGGTGGTGACTCTTATTCTGGCATACCTATTCCCATGCTTGCAGAACAAATAATTGATGGTAATGAAAATGGAAGTGTGCCTATGATGAATCTCAAAGGGTATGTGCTTGGGAACCCAGTAACTGATTCTGTCATTGATATGAATGCAAGAGTTACTTATGCTCACAGGTTGTCTCTCGTGTCGGATCAACTGTATAAGGCTGCTAAAACAAGTTGCAATGGAGATTATGTAAATGTAGATTCAAGCAATGATGCATGCATAGCAGATATTGATGCCATTTCTGAGCTCACCAATGACATAAATTTGGTACACATCTTGGAACCATATTGTAGTAATGCATTGCCTACAGCAAAGGAGATGTGTCAAGCTCGTAGATACCTCAAAGACTTGTCCAAAGGTTTACTAAGTTCACCACCTAACGGTCCTGCACTTTGGTGTCGAAGTTATAATCACATGCTCGCCTCGGTTTGGGCAAACAACAAAGGTGTCCAAGATGCTCTTGGTGTCCGAAGGGGCACCAAACAGTTTTGGCAGTACTGTAATACCACATTGGCTTACACTAAAGTTGCCACAAGTGTAGTGAGTTATCATCAAATTCTCTCAAAGAGGGCTGACCTTCGTGCTCTGATATACAGTGGTGACCATGACATGTCAATTCCTCATATTGGTACACAAGAATGGATAAAGACTCTGAATTTGACTGTGGACGAGTCCTGGAGGACATGGTCAATTGATGGCCAAACTGCAGGATACACAAAGAAGTTAATCAATGAGGTTTTCAGTTTGACGTTCGTCACTATAAAGGGTGCAGGCCACTTTGCGGCAGAGTATAAAATCAAGGAATGTGCTGCCATGATTGATCGATGGATGGGTTACTTCCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

470

Amino Acids

52.44

Weight (kDa)

5.01

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 32 - 465 3.1e-117 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 972
AccB1I GGYRCC 2 cut(s) 392, 1040
AciI CCGC 1 cut(s) 1346
AclWI GGATC 3 cut(s) 206, 236, 717
AcoI YGGCCR 1 cut(s) 1261
AcsI RAATTY 6 cut(s) 446, 459, 467, 826, 1119, 1219
AcuI CTGAAG 2 cut(s) 45, 314
AfaI GTAC 3 cut(s) 834, 1061, 1195
AfiI CCNNNNNNNGG 4 cut(s) 944, 993, 1190, 1345
AflIII ACRYGT 1 cut(s) 1173
AgsI TTSAA 3 cut(s) 69, 295, 768
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 3 cut(s) 94, 241, 1238
AleI CACNNNNGTG 1 cut(s) 958
AluBI AGCT 4 cut(s) 65, 169, 811, 893
AluI AGCT 4 cut(s) 65, 169, 811, 893
Alw21I GWGCWC 2 cut(s) 813, 1150
Alw26I GTCTC 3 cut(s) 144, 195, 702
AlwI GGATC 3 cut(s) 206, 236, 717
AlwNI CAGNNNCTG 1 cut(s) 647
AoxI GGCC 3 cut(s) 238, 1261, 1336
ApeKI GCWGC 3 cut(s) 166, 725, 1373
ApoI RAATTY 6 cut(s) 446, 459, 467, 826, 1119, 1219
ArsI GACNNNNNNTTYG 4 cut(s) 431, 463, 1204, 1236
AspS9I GGNCC 4 cut(s) 75, 239, 281, 947
AsuHPI GGTGA 6 cut(s) 34, 119, 542, 805, 927, 1175
AvaII GGWCC 3 cut(s) 75, 281, 947
BaeGI GKGCMC 1 cut(s) 1043
BalI TGGCCA 1 cut(s) 1263
BanI GGYRCC 2 cut(s) 392, 1040
BanII GRGCYC 1 cut(s) 813
BauI CACGAG 1 cut(s) 701
Bbv12I GWGCWC 2 cut(s) 813, 1150
BbvI GCAGC 3 cut(s) 178, 712, 1360
BccI CCATC 5 cut(s) 86, 575, 1253, 1383, 1387
BciT130I CCWGG 3 cut(s) 96, 243, 1240
BciVI GTATCC 2 cut(s) 392, 1268
BcoDI GTCTC 3 cut(s) 144, 195, 702
BfaI CTAG 2 cut(s) 252, 485
BfmI CTRYAG 2 cut(s) 870, 1269
BfuI GTATCC 2 cut(s) 392, 1268
BisI GCNGC 4 cut(s) 167, 726, 1347, 1374
BlsI GCNGC 4 cut(s) 168, 727, 1348, 1375
BmcAI AGTACT 1 cut(s) 1061
Bme1390I CCNGG 3 cut(s) 96, 243, 1240
Bme18I GGWCC 3 cut(s) 75, 281, 947
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 4 cut(s) 75, 239, 281, 947
BmiI GGNNCC 5 cut(s) 200, 394, 638, 846, 1042
BmrFI CCNGG 3 cut(s) 96, 243, 1240
BmrI ACTGGG 1 cut(s) 635
BmsI GCATC 4 cut(s) 370, 766, 787, 1009
BmuI ACTGGG 1 cut(s) 635
BoxI GACNNNNGTC 1 cut(s) 1316
BpmI CTGGAG 2 cut(s) 255, 1261
Bsa29I ATCGAT 1 cut(s) 1387
BsaJI CCNNGG 2 cut(s) 241, 987
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 4 cut(s) 944, 993, 1190, 1345
Bse1I ACTGG 4 cut(s) 77, 238, 386, 641
Bse3DI GCAATG 3 cut(s) 748, 778, 863
BseBI CCWGG 3 cut(s) 96, 243, 1240
BseCI ATCGAT 1 cut(s) 1387
BseDI CCNNGG 2 cut(s) 241, 987
BseGI GGATG 3 cut(s) 385, 442, 1398
BseLI CCNNNNNNNGG 4 cut(s) 944, 993, 1190, 1345
BseMI GCAATG 3 cut(s) 748, 778, 863
BseMII CTCAG 3 cut(s) 206, 423, 798
BseNI ACTGG 4 cut(s) 77, 238, 386, 641
BseSI GKGCMC 1 cut(s) 1043
BseXI GCAGC 3 cut(s) 178, 712, 1360
BsgI GTGCAG 4 cut(s) 185, 189, 936, 1353
BshFI GGCC 3 cut(s) 240, 1263, 1338
BshNI GGYRCC 2 cut(s) 392, 1040
BshVI ATCGAT 1 cut(s) 1387
BsiHKAI GWGCWC 2 cut(s) 813, 1150
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 4 cut(s) 944, 993, 1190, 1345
BsmAI GTCTC 3 cut(s) 144, 195, 702
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 3 cut(s) 240, 1263, 1338
Bsp1286I GDGCHC 3 cut(s) 813, 1043, 1150
Bsp143I GATC 5 cut(s) 109, 211, 228, 709, 1384
BspACI CCGC 1 cut(s) 1346
BspANI GGCC 3 cut(s) 240, 1263, 1338
BspCNI CTCAG 3 cut(s) 205, 422, 799
BspDI ATCGAT 1 cut(s) 1387
BspLI GGNNCC 5 cut(s) 200, 394, 638, 846, 1042
BspMAI CTGCAG 1 cut(s) 1273
BspPI GGATC 3 cut(s) 206, 236, 717
BspT107I GGYRCC 2 cut(s) 392, 1040
BsrDI GCAATG 3 cut(s) 748, 778, 863
BsrI ACTGG 4 cut(s) 77, 238, 386, 641
BssECI CCNNGG 2 cut(s) 241, 987
BssMI GATC 5 cut(s) 109, 211, 228, 709, 1384
BssSI CACGAG 1 cut(s) 701
Bst2BI CACGAG 1 cut(s) 701
Bst2UI CCWGG 3 cut(s) 96, 243, 1240
Bst4CI ACNGT 6 cut(s) 717, 947, 1050, 1064, 1160, 1228
BstC8I GCNNGC 4 cut(s) 564, 781, 984, 1336
BstDEI CTNAG 4 cut(s) 192, 409, 807, 929
BstEII GGTNACC 1 cut(s) 1163
BstF5I GGATG 3 cut(s) 385, 442, 1398
BstKTI GATC 5 cut(s) 112, 214, 231, 712, 1387
BstMAI GTCTC 3 cut(s) 144, 195, 702
BstMBI GATC 5 cut(s) 109, 211, 228, 709, 1384
BstMWI GCNNNNNNNGC 3 cut(s) 246, 481, 785
BstNI CCWGG 3 cut(s) 96, 243, 1240
BstNSI RCATGY 3 cut(s) 783, 982, 1177
BstPAI GACNNNNGTC 1 cut(s) 1316
BstPI GGTNACC 1 cut(s) 1163
BstSCI CCNGG 3 cut(s) 94, 241, 1238
BstSFI CTRYAG 2 cut(s) 870, 1269
BstSLI GKGCMC 1 cut(s) 1043
BstV1I GCAGC 3 cut(s) 178, 712, 1360
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 1387
BsuI GTATCC 2 cut(s) 392, 1268
BsuRI GGCC 3 cut(s) 240, 1263, 1338
BsuTUI ATCGAT 1 cut(s) 1387
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 3 cut(s) 385, 442, 1398
BtsIMutI CAGTG 2 cut(s) 231, 1165
Cac8I GCNNGC 4 cut(s) 564, 781, 984, 1336
CaiI CAGNNNCTG 1 cut(s) 647
Cfr13I GGNCC 4 cut(s) 75, 239, 281, 947
ClaI ATCGAT 1 cut(s) 1387
CsiI ACCWGGT 1 cut(s) 94
Csp6I GTAC 3 cut(s) 833, 1060, 1194
CviAII CATG 8 cut(s) 348, 559, 780, 979, 1169, 1174, 1248, 1378
CviQI GTAC 3 cut(s) 833, 1060, 1194
DdeI CTNAG 4 cut(s) 192, 409, 807, 929
DpnI GATC 5 cut(s) 111, 213, 230, 711, 1386
DpnII GATC 5 cut(s) 109, 211, 228, 709, 1384
EaeI YGGCCR 1 cut(s) 1261
Ecl136II GAGCTC 1 cut(s) 811
Eco24I GRGCYC 1 cut(s) 813
Eco47I GGWCC 3 cut(s) 75, 281, 947
Eco53kI GAGCTC 1 cut(s) 811
Eco57I CTGAAG 2 cut(s) 45, 314
Eco91I GGTNACC 1 cut(s) 1163
EcoICRI GAGCTC 1 cut(s) 811
EcoO109I RGGNCCY 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 1163
EcoRII CCWGG 3 cut(s) 94, 241, 1238
EcoT22I ATGCAT 4 cut(s) 349, 781, 785, 865
EcoT38I GRGCYC 1 cut(s) 813
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 8 cut(s) 351, 562, 783, 982, 1172, 1177, 1251, 1381
FalI AAGNNNNNCTT 4 cut(s) 664, 696, 1008, 1040
FaqI GGGAC 1 cut(s) 372
FatI CATG 8 cut(s) 347, 558, 779, 978, 1168, 1173, 1247, 1377
Fnu4HI GCNGC 4 cut(s) 167, 726, 1347, 1374
FokI GGATG 3 cut(s) 392, 449, 1405
FriOI GRGCYC 1 cut(s) 813
Fsp4HI GCNGC 4 cut(s) 167, 726, 1347, 1374
FspBI CTAG 2 cut(s) 252, 485
GluI GCNGC 4 cut(s) 167, 726, 1347, 1374
GsuI CTGGAG 2 cut(s) 255, 1261
HaeIII GGCC 3 cut(s) 240, 1263, 1338
HapII CCGG 1 cut(s) 396
Hin1II CATG 8 cut(s) 351, 562, 783, 982, 1172, 1177, 1251, 1381
HinfI GANTC 9 cut(s) 128, 188, 360, 533, 613, 650, 764, 1213, 1235
HpaII CCGG 1 cut(s) 396
HphI GGTGA 6 cut(s) 34, 119, 542, 805, 927, 1175
Hpy166II GTNNAC 5 cut(s) 835, 926, 935, 1196, 1231
Hpy188I TCNGA 7 cut(s) 195, 412, 709, 808, 1034, 1152, 1218
Hpy188III TCNNGA 2 cut(s) 132, 332
Hpy8I GTNNAC 5 cut(s) 835, 926, 935, 1196, 1231
HpyAV CCTTC 2 cut(s) 1029, 1151
HpyCH4III ACNGT 6 cut(s) 717, 947, 1050, 1064, 1160, 1228
HpyCH4IV ACGT 2 cut(s) 35, 1313
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 481, 785
HpyF3I CTNAG 4 cut(s) 192, 409, 807, 929
HpySE526I ACGT 2 cut(s) 35, 1313
Hsp92II CATG 8 cut(s) 351, 562, 783, 982, 1172, 1177, 1251, 1381
Kzo9I GATC 5 cut(s) 109, 211, 228, 709, 1384
Lsp1109I GCAGC 3 cut(s) 178, 712, 1360
LweI GCATC 4 cut(s) 370, 766, 787, 1009
MabI ACCWGGT 1 cut(s) 94
MaeI CTAG 2 cut(s) 252, 485
MaeII ACGT 2 cut(s) 35, 1313
MaeIII GTNAC 6 cut(s) 530, 643, 676, 1163, 1318, 1397
MalI GATC 5 cut(s) 111, 213, 230, 711, 1386
MboI GATC 5 cut(s) 109, 211, 228, 709, 1384
MboII GAAGA 2 cut(s) 104, 170
MfeI CAATTG 1 cut(s) 1254
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 3 cut(s) 813, 1043, 1150
MlsI TGGCCA 1 cut(s) 1263
MluCI AATT 9 cut(s) 446, 459, 467, 576, 826, 1119, 1179, 1219, 1254
MluNI TGGCCA 1 cut(s) 1263
MlyI GAGTC 5 cut(s) 197, 354, 527, 1207, 1244
MmeI TCCRAC 1 cut(s) 687
Mox20I TGGCCA 1 cut(s) 1263
Mph1103I ATGCAT 4 cut(s) 349, 781, 785, 865
MscI TGGCCA 1 cut(s) 1263
MseI TTAA 1 cut(s) 1289
MslI CAYNNNNRTG 3 cut(s) 662, 958, 1201
Msp20I TGGCCA 1 cut(s) 1263
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 3 cut(s) 96, 243, 1240
MunI CAATTG 1 cut(s) 1254
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 3 cut(s) 96, 243, 1240
MwoI GCNNNNNNNGC 3 cut(s) 246, 481, 785
NdeII GATC 5 cut(s) 109, 211, 228, 709, 1384
NlaIII CATG 8 cut(s) 351, 562, 783, 982, 1172, 1177, 1251, 1381
NlaIV GGNNCC 5 cut(s) 200, 394, 638, 846, 1042
NmuCI GTSAC 3 cut(s) 530, 1163, 1318
NsiI ATGCAT 4 cut(s) 349, 781, 785, 865
NspI RCATGY 3 cut(s) 783, 982, 1177
OliI CACNNNNGTG 1 cut(s) 958
PaeI GCATGC 1 cut(s) 783
PciI ACATGT 1 cut(s) 1173
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 4 cut(s) 128, 613, 650, 764
PflFI GACNNNGTC 1 cut(s) 1249
PfoI TCCNGGA 1 cut(s) 1238
PkrI GCNGC 4 cut(s) 168, 727, 1348, 1375
PleI GAGTC 5 cut(s) 196, 354, 527, 1207, 1243
PpsI GAGTC 5 cut(s) 196, 354, 527, 1207, 1243
PscI ACATGT 1 cut(s) 1173
PshAI GACNNNNGTC 1 cut(s) 1316
PsiI TTATAA 1 cut(s) 972
Psp124BI GAGCTC 1 cut(s) 813
Psp6I CCWGG 3 cut(s) 94, 241, 1238
PspEI GGTNACC 1 cut(s) 1163
PspGI CCWGG 3 cut(s) 94, 241, 1238
PspN4I GGNNCC 5 cut(s) 200, 394, 638, 846, 1042
PspPI GGNCC 4 cut(s) 75, 239, 281, 947
PstI CTGCAG 1 cut(s) 1273
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 1249
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 3 cut(s) 834, 1061, 1195
RsaNI GTAC 3 cut(s) 833, 1060, 1194
RseI CAYNNNNRTG 3 cut(s) 662, 958, 1201
SacI GAGCTC 1 cut(s) 813
SaqAI TTAA 1 cut(s) 1289
SatI GCNGC 4 cut(s) 167, 726, 1347, 1374
Sau3AI GATC 5 cut(s) 109, 211, 228, 709, 1384
Sau96I GGNCC 4 cut(s) 75, 239, 281, 947
ScaI AGTACT 1 cut(s) 1061
SchI GAGTC 5 cut(s) 197, 354, 527, 1207, 1244
ScrFI CCNGG 3 cut(s) 96, 243, 1240
SduI GDGCHC 3 cut(s) 813, 1043, 1150
SexAI ACCWGGT 1 cut(s) 94
SfaNI GCATC 4 cut(s) 370, 766, 787, 1009
SfcI CTRYAG 2 cut(s) 870, 1269
SinI GGWCC 3 cut(s) 75, 281, 947
SmiMI CAYNNNNRTG 3 cut(s) 662, 958, 1201
SphI GCATGC 1 cut(s) 783
Sse9I AATT 9 cut(s) 446, 459, 467, 576, 826, 1119, 1179, 1219, 1254
SsiI CCGC 1 cut(s) 1346
SspMI CTAG 2 cut(s) 252, 485
SstI GAGCTC 1 cut(s) 813
StyD4I CCNGG 3 cut(s) 94, 241, 1238
TaaI ACNGT 6 cut(s) 717, 947, 1050, 1064, 1160, 1228
TaiI ACGT 2 cut(s) 38, 1316
TaqI TCGA 3 cut(s) 186, 964, 1387
TasI AATT 9 cut(s) 446, 459, 467, 576, 826, 1119, 1179, 1219, 1254
TatI WGTACW 1 cut(s) 1059
TauI GCSGC 1 cut(s) 1349
TfiI GAWTC 4 cut(s) 128, 613, 650, 764
Tru1I TTAA 1 cut(s) 1289
Tru9I TTAA 1 cut(s) 1289
TscAI CASTG 2 cut(s) 238, 1165
TseFI GTSAC 3 cut(s) 530, 1163, 1318
TseI GCWGC 3 cut(s) 166, 725, 1373
Tsp45I GTSAC 3 cut(s) 530, 1163, 1318
TspDTI ATGAA 5 cut(s) 171, 480, 603, 626, 680
TspRI CASTG 2 cut(s) 238, 1165
Tth111I GACNNNGTC 1 cut(s) 1249
VpaK11BI GGWCC 3 cut(s) 75, 281, 947
XapI RAATTY 6 cut(s) 446, 459, 467, 826, 1119, 1219
XceI RCATGY 3 cut(s) 783, 982, 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 1022
XspI CTAG 2 cut(s) 252, 485
ZrmI AGTACT 1 cut(s) 1061
Zsp2I ATGCAT 4 cut(s) 349, 781, 785, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.