Rmu_sc0004094.1_g000010

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004094.1
OG0000839
Physical Location & Seq
Forward (+)
64132 .. 68827
4696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004094.1_g000010.1.cds

Sequence Viewer

Length: 888 bp
atgcccaccatgacgaaattgatgggtatgcgactacttcttgcatttgttttcactctcatacttgcttcaacttcttcggccaatgtcactaccaccacaattaccacactacctggttactcaggcgacctccctttctccttcgaaactgggtacgttggtgtaggtgacaatgaagaagtgcagctattttactactttgtcgagtctcagaggactccagcacaggatcctctgctgttgtggatccctgcgggacctgatcttgatgcctttgatgcactaacgagtgacataaatacattacatgtcttggaaccattatgtagtaatggtttacctacacaaaaggaaatggttttgacccggagatatctcaaggaaacatctagcggtttacaaagatcacgacctaacggccctgcactttggtgtcggagttatcgtagcatgctcaacaccgtttgggctaacaacaaaggtgttcaagatgctcttggtgtccgaaggggcacgaaaaggctttggcaacactgtaatacgacattggactacactgaagatgtcaccagcgtaatcatttatcaccaaagtctttcaaaaatggctgatctacgtgttctgatatacagtggtgatcatgacatgcaagttcctcatattggtacacaaagatggataagcacactgaatttgactgaggatgaatcctggaggacatggtcagttgatggccaaactgcaggatacacgaagaagttgatcaatgaatatatcactttgacatatgcgactgtaaagggaggaggccatattgctgcagagacaaaggtcaaggaatgcgctgccatgattaatagatggatggcttacttccctctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

295

Amino Acids

33.15

Weight (kDa)

6.31

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 257, 396
AclWI GGATC 4 cut(s) 227, 240, 244, 257
AcoI YGGCCR 2 cut(s) 81, 736
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 2 cut(s) 158, 670
AfiI CCNNNNNNNGG 1 cut(s) 665
AflIII ACRYGT 2 cut(s) 310, 619
AgsI TTSAA 3 cut(s) 72, 491, 603
AjnI CCWGG 2 cut(s) 115, 713
AleI CACNNNNGTG 1 cut(s) 433
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 2 cut(s) 216, 821
AlwI GGATC 4 cut(s) 227, 240, 244, 257
AoxI GGCC 4 cut(s) 81, 421, 736, 811
ApeKI GCWGC 3 cut(s) 187, 821, 848
ApoI RAATTY 1 cut(s) 694
AseI ATTAAT 1 cut(s) 858
AspLEI GCGC 1 cut(s) 848
AspS9I GGNCC 2 cut(s) 260, 422
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 4 cut(s) 182, 562, 581, 650
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 518
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BalI TGGCCA 1 cut(s) 738
BamHI GGATCC 2 cut(s) 232, 249
BbvI GCAGC 3 cut(s) 199, 808, 835
BccI CCATC 5 cut(s) 16, 672, 728, 858, 862
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 2 cut(s) 117, 715
BciVI GTATCC 1 cut(s) 743
BclI TGATCA 2 cut(s) 640, 765
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 216, 821
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 2 cut(s) 744, 822
BfuI GTATCC 1 cut(s) 743
BisI GCNGC 3 cut(s) 188, 822, 849
BlsI GCNGC 3 cut(s) 189, 823, 850
Bme1390I CCNGG 3 cut(s) 117, 370, 715
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 260, 422
BmiI GGNNCC 4 cut(s) 234, 251, 261, 321
BmrFI CCNGG 3 cut(s) 117, 370, 715
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 3 cut(s) 262, 271, 484
BmuI ACTGGG 1 cut(s) 162
BoxI GACNNNNGTC 1 cut(s) 833
BpmI CTGGAG 2 cut(s) 207, 736
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 370
BsaAI YACGTR 1 cut(s) 620
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bsc4I CCNNNNNNNGG 1 cut(s) 665
Bse1I ACTGG 1 cut(s) 157
BseBI CCWGG 2 cut(s) 117, 715
BseGI GGATG 2 cut(s) 712, 873
BseLI CCNNNNNNNGG 1 cut(s) 665
BseMII CTCAG 3 cut(s) 138, 227, 693
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 822
BseSI GKGCMC 1 cut(s) 518
BseXI GCAGC 3 cut(s) 199, 808, 835
BsgI GTGCAG 2 cut(s) 206, 411
BshFI GGCC 4 cut(s) 83, 423, 738, 813
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 665
BsmAI GTCTC 2 cut(s) 216, 821
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 848
BsnI GGCC 4 cut(s) 83, 423, 738, 813
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 518
Bsp143I GATC 7 cut(s) 232, 249, 265, 407, 613, 640, 765
BspACI CCGC 2 cut(s) 257, 396
BspANI GGCC 4 cut(s) 83, 423, 738, 813
BspCNI CTCAG 3 cut(s) 137, 226, 694
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 4 cut(s) 234, 251, 261, 321
BspMAI CTGCAG 2 cut(s) 748, 826
BspPI GGATC 4 cut(s) 227, 240, 244, 257
BspT104I TTCGAA 1 cut(s) 147
BsrI ACTGG 1 cut(s) 157
BssMI GATC 7 cut(s) 232, 249, 265, 407, 613, 640, 765
Bst2UI CCWGG 2 cut(s) 117, 715
Bst4CI ACNGT 4 cut(s) 466, 539, 635, 799
BstBAI YACGTR 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 3 cut(s) 124, 213, 702
BstF5I GGATG 2 cut(s) 712, 873
BstHHI GCGC 1 cut(s) 848
BstKTI GATC 7 cut(s) 235, 252, 268, 410, 616, 643, 768
BstMAI GTCTC 2 cut(s) 216, 821
BstMBI GATC 7 cut(s) 232, 249, 265, 407, 613, 640, 765
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 2 cut(s) 117, 715
BstNSI RCATGY 3 cut(s) 314, 457, 652
BstPAI GACNNNNGTC 1 cut(s) 833
BstSCI CCNGG 3 cut(s) 115, 368, 713
BstSFI CTRYAG 2 cut(s) 744, 822
BstSLI GKGCMC 1 cut(s) 518
BstV1I GCAGC 3 cut(s) 199, 808, 835
BstX2I RGATCY 2 cut(s) 232, 249
BstYI RGATCY 2 cut(s) 232, 249
BsuI GTATCC 1 cut(s) 743
BsuRI GGCC 4 cut(s) 83, 423, 738, 813
BtsCI GGATG 2 cut(s) 712, 873
BtsIMutI CAGTG 4 cut(s) 535, 558, 640, 689
Cac8I GCNNGC 1 cut(s) 455
CciI TCATGA 1 cut(s) 643
CfoI GCGC 1 cut(s) 848
Cfr13I GGNCC 2 cut(s) 260, 422
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 2 cut(s) 157, 669
CviAII CATG 7 cut(s) 10, 311, 454, 644, 649, 723, 853
CviJI RGCY 9 cut(s) 83, 190, 423, 473, 526, 611, 738, 813, 872
CviKI_1 RGCY 9 cut(s) 83, 190, 423, 473, 526, 611, 738, 813, 872
CviQI GTAC 2 cut(s) 157, 669
DdeI CTNAG 3 cut(s) 124, 213, 702
DpnI GATC 7 cut(s) 234, 251, 267, 409, 615, 642, 767
DpnII GATC 7 cut(s) 232, 249, 265, 407, 613, 640, 765
EaeI YGGCCR 2 cut(s) 81, 736
Eco32I GATATC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 115, 713
EcoRV GATATC 1 cut(s) 377
FaeI CATG 7 cut(s) 13, 314, 457, 647, 652, 726, 856
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 1 cut(s) 273
FatI CATG 7 cut(s) 9, 310, 453, 643, 648, 722, 852
FauI CCCGC 1 cut(s) 250
FauNDI CATATG 1 cut(s) 790
FbaI TGATCA 2 cut(s) 640, 765
Fnu4HI GCNGC 3 cut(s) 188, 822, 849
FokI GGATG 2 cut(s) 719, 880
Fsp4HI GCNGC 3 cut(s) 188, 822, 849
FspBI CTAG 1 cut(s) 393
GlaI GCGC 1 cut(s) 847
GluI GCNGC 3 cut(s) 188, 822, 849
GsuI CTGGAG 2 cut(s) 207, 736
HaeIII GGCC 4 cut(s) 83, 423, 738, 813
HapII CCGG 1 cut(s) 370
HhaI GCGC 1 cut(s) 848
Hin1II CATG 7 cut(s) 13, 314, 457, 647, 652, 726, 856
Hin6I GCGC 1 cut(s) 846
HinP1I GCGC 1 cut(s) 846
HinfI GANTC 3 cut(s) 209, 220, 710
HpaII CCGG 1 cut(s) 370
HphI GGTGA 4 cut(s) 182, 562, 581, 650
Hpy166II GTNNAC 3 cut(s) 341, 401, 671
Hpy188I TCNGA 4 cut(s) 216, 441, 509, 627
Hpy188III TCNNGA 4 cut(s) 269, 411, 491, 644
Hpy8I GTNNAC 3 cut(s) 341, 401, 671
HpyAV CCTTC 2 cut(s) 154, 504
HpyCH4III ACNGT 4 cut(s) 466, 539, 635, 799
HpyCH4IV ACGT 2 cut(s) 159, 619
HpyCH4V TGCA 7 cut(s) 44, 187, 284, 428, 652, 746, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 124, 213, 702
HpySE526I ACGT 2 cut(s) 159, 619
Hsp92II CATG 7 cut(s) 13, 314, 457, 647, 652, 726, 856
HspAI GCGC 1 cut(s) 846
Ksp22I TGATCA 2 cut(s) 640, 765
Kzo9I GATC 7 cut(s) 232, 249, 265, 407, 613, 640, 765
Lsp1109I GCAGC 3 cut(s) 199, 808, 835
LweI GCATC 3 cut(s) 262, 271, 484
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 1 cut(s) 393
MaeII ACGT 2 cut(s) 159, 619
MaeIII GTNAC 5 cut(s) 88, 119, 170, 293, 568
MalI GATC 7 cut(s) 234, 251, 267, 409, 615, 642, 767
MboI GATC 7 cut(s) 232, 249, 265, 407, 613, 640, 765
MboII GAAGA 4 cut(s) 69, 191, 575, 769
MflI RGATCY 2 cut(s) 232, 249
MhlI GDGCHC 1 cut(s) 518
MlsI TGGCCA 1 cut(s) 738
MluCI AATT 3 cut(s) 17, 102, 694
MluNI TGGCCA 1 cut(s) 738
MlyI GAGTC 2 cut(s) 214, 218
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 8 cut(s) 143, 210, 246, 669, 697, 711, 800, 803
Mox20I TGGCCA 1 cut(s) 738
MscI TGGCCA 1 cut(s) 738
MseI TTAA 1 cut(s) 858
MslI CAYNNNNRTG 2 cut(s) 433, 676
Msp20I TGGCCA 1 cut(s) 738
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 3 cut(s) 117, 370, 715
Mva1269I GAATGC 1 cut(s) 848
MvaI CCWGG 2 cut(s) 117, 715
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 370
NdeI CATATG 1 cut(s) 790
NdeII GATC 7 cut(s) 232, 249, 265, 407, 613, 640, 765
NlaIII CATG 7 cut(s) 13, 314, 457, 647, 652, 726, 856
NlaIV GGNNCC 4 cut(s) 234, 251, 261, 321
NmuCI GTSAC 4 cut(s) 88, 170, 293, 568
NspI RCATGY 3 cut(s) 314, 457, 652
NspV TTCGAA 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 433
PaeI GCATGC 1 cut(s) 457
PagI TCATGA 1 cut(s) 643
PciI ACATGT 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 445
PctI GAATGC 1 cut(s) 848
PfeI GAWTC 1 cut(s) 710
PflFI GACNNNGTC 1 cut(s) 724
PfoI TCCNGGA 1 cut(s) 713
PkrI GCNGC 3 cut(s) 189, 823, 850
PleI GAGTC 2 cut(s) 214, 217
PpsI GAGTC 2 cut(s) 214, 217
Ppu21I YACGTR 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 260
PscI ACATGT 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 833
PshBI ATTAAT 1 cut(s) 858
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 115, 713
PspGI CCWGG 2 cut(s) 115, 713
PspN4I GGNNCC 4 cut(s) 234, 251, 261, 321
PspPI GGNCC 2 cut(s) 260, 422
PspPPI RGGWCCY 1 cut(s) 260
PstI CTGCAG 2 cut(s) 748, 826
PsuI RGATCY 2 cut(s) 232, 249
PsyI GACNNNGTC 1 cut(s) 724
RsaI GTAC 2 cut(s) 158, 670
RsaNI GTAC 2 cut(s) 157, 669
RseI CAYNNNNRTG 2 cut(s) 433, 676
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 3 cut(s) 188, 822, 849
Sau3AI GATC 7 cut(s) 232, 249, 265, 407, 613, 640, 765
Sau96I GGNCC 2 cut(s) 260, 422
SchI GAGTC 2 cut(s) 214, 218
ScrFI CCNGG 3 cut(s) 117, 370, 715
SduI GDGCHC 1 cut(s) 518
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 3 cut(s) 262, 271, 484
SfcI CTRYAG 2 cut(s) 744, 822
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 433, 676
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SphI GCATGC 1 cut(s) 457
Sse9I AATT 3 cut(s) 17, 102, 694
SsiI CCGC 2 cut(s) 257, 396
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 3 cut(s) 115, 368, 713
TaaI ACNGT 4 cut(s) 466, 539, 635, 799
TaiI ACGT 2 cut(s) 162, 622
TaqI TCGA 2 cut(s) 147, 207
TasI AATT 3 cut(s) 17, 102, 694
TfiI GAWTC 1 cut(s) 710
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 4 cut(s) 542, 565, 640, 696
TseFI GTSAC 4 cut(s) 88, 170, 293, 568
TseI GCWGC 3 cut(s) 187, 821, 848
Tsp45I GTSAC 4 cut(s) 88, 170, 293, 568
TspDTI ATGAA 3 cut(s) 192, 723, 786
TspRI CASTG 4 cut(s) 542, 565, 640, 696
Tth111I GACNNNGTC 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 1 cut(s) 858
XapI RAATTY 1 cut(s) 694
XceI RCATGY 3 cut(s) 314, 457, 652
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.