Rh6CG489100

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000839
Physical Location & Seq
Forward (+)
65689649 .. 65692369
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG489100.1

Sequence Viewer

Length: 978 bp
ATGCAGCGAGGCCAAAAGAGCAGAGAAGACTCGGTTCTTGCCGGAATTGAAGAATCTCTTCACTCCGGAATCTCCGTCGATCACTTTGGTTTTGGCGCGGAGGTATTCGGCGGCGGCGAGGCGGGAGCGGAGAGACTTGATTCTCTCCTGATTCTGGTCCAGCACAAGTGCGTCCAGCCCTTTACCCAAGAATCCAGCAGACTTACACAGCAACAATTAATGGACAGAGCCAATCAGAAATTCAAATCAAATAGCAGTCAAGGAAAGACAGACAGAGCTTTCTGGATTGAGGGGGTCGGATCGACGGGAGAGGAAAAGCTTGGTGGGGTATTTGTGGATGTAGGAAGAGGGAGATATATCGGTGTAGGTGACAATGAAGAAGTGCATCTATTTTACGTTTTCGTTGAGTCTGAAAGAGCTCCTGCAGACGATCCTCTGTTGTTATCGTTCAATGGAGGCCCAGGTTGCTCTAGTCTTGCTGGATTCTTTTTTGAGAGTGGTCCAATAACTTTTAAGTTTGGAAATTACAATGGGAGCCTACCAGCGGTTCTTGACAATCCATTTCGATGGACAAAGGACGTTAGCATGATATGCATAGATGCACCTGTTGGTGCTGGATTCTCCTACTCAAAAACTCAAAGCGGTTATGTTATGGATGACTATAAATATGTTGCACAAAGCTATGAATTTCTGCAGAAGGGATATGTAATTGGGAACCCAGTGACGGATTCATTCATTGATGCAAATGCAAGAATTCCTTATGCCCATCGGCTAACTCTTATATCAGATCAACTGTATGAGAATTTATTTGGAATGGCCAAAAATATTTTCTTTACCATGTTTTCCATGGCTATACATTATTTCACGGCGGTGAAAACAAGTTGCAGTGGAGATTACGTAAACGTAGATTCAAGCAATGACGCATGCATTTCAGATATCGATGCTATTGATGCAGTAAGAGATCATCTATTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

325

Amino Acids

35.68

Weight (kDa)

4.83

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 119 - 233 1.6e-34 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AccII CGCG 1 cut(s) 98
AccIII TCCGGA 1 cut(s) 65
AciI CCGC 8 cut(s) 98, 111, 114, 122, 128, 545, 642, 869
AclWI GGATC 2 cut(s) 307, 425
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 4 cut(s) 239, 686, 753, 802
AfiI CCNNNNNNNGG 3 cut(s) 154, 544, 724
AgsI TTSAA 4 cut(s) 50, 244, 451, 912
AjnI CCWGG 1 cut(s) 460
AjuI GAANNNNNNNTTGG 4 cut(s) 224, 256, 812, 844
AleI CACNNNNGTG 1 cut(s) 869
AluBI AGCT 4 cut(s) 278, 319, 419, 681
AluI AGCT 4 cut(s) 278, 319, 419, 681
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 2 cut(s) 307, 425
Aor13HI TCCGGA 1 cut(s) 65
AoxI GGCC 3 cut(s) 10, 457, 816
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 4 cut(s) 239, 686, 753, 802
AseI ATTAAT 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 157, 458, 500
AsuHPI GGTGA 2 cut(s) 380, 883
AvaII GGWCC 2 cut(s) 157, 500
BalI TGGCCA 1 cut(s) 818
BanII GRGCYC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 561, 774
BceAI ACGGC 1 cut(s) 882
BciT130I CCWGG 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 2 cut(s) 423, 692
BisI GCNGC 3 cut(s) 5, 112, 115
BlsI GCNGC 3 cut(s) 6, 113, 116
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 2 cut(s) 157, 500
BmgT120I GGNCC 3 cut(s) 157, 458, 500
BmiI GGNNCC 2 cut(s) 536, 716
BmrFI CCNGG 1 cut(s) 462
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 5 cut(s) 394, 589, 730, 931, 940
BmuI ACTGGG 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 33
Bsa29I ATCGAT 1 cut(s) 939
BsaAI YACGTR 1 cut(s) 898
BsaJI CCNNGG 2 cut(s) 460, 846
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 544, 724
Bse1I ACTGG 1 cut(s) 719
Bse3DI GCAATG 1 cut(s) 922
BseAI TCCGGA 1 cut(s) 65
BseBI CCWGG 1 cut(s) 462
BseCI ATCGAT 1 cut(s) 939
BseDI CCNNGG 2 cut(s) 460, 846
BseGI GGATG 2 cut(s) 343, 661
BseLI CCNNNNNNNGG 3 cut(s) 154, 544, 724
BseMI GCAATG 1 cut(s) 922
BseNI ACTGG 1 cut(s) 719
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 3 cut(s) 12, 459, 818
BshVI ATCGAT 1 cut(s) 939
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 2 cut(s) 42, 66
BslI CCNNNNNNNGG 3 cut(s) 154, 544, 724
BsmAI GTCTC 1 cut(s) 127
BsnI GGCC 3 cut(s) 12, 459, 818
Bsp1286I GDGCHC 1 cut(s) 421
Bsp13I TCCGGA 1 cut(s) 65
Bsp143I GATC 5 cut(s) 79, 299, 430, 787, 961
Bsp19I CCATGG 1 cut(s) 846
BspACI CCGC 8 cut(s) 98, 111, 114, 122, 128, 545, 642, 869
BspANI GGCC 3 cut(s) 12, 459, 818
BspDI ATCGAT 1 cut(s) 939
BspEI TCCGGA 1 cut(s) 65
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 536, 716
BspMAI CTGCAG 2 cut(s) 427, 696
BspPI GGATC 2 cut(s) 307, 425
BsrBI CCGCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 922
BsrI ACTGG 1 cut(s) 719
BssECI CCNNGG 2 cut(s) 460, 846
BssMI GATC 5 cut(s) 79, 299, 430, 787, 961
BssT1I CCWWGG 1 cut(s) 846
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 795
Bst6I CTCTTC 2 cut(s) 63, 340
BstAPI GCANNNNNTGC 1 cut(s) 591
BstBAI YACGTR 1 cut(s) 898
BstC8I GCNNGC 1 cut(s) 925
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 2 cut(s) 343, 661
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 5 cut(s) 82, 302, 433, 790, 964
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 5 cut(s) 79, 299, 430, 787, 961
BstMWI GCNNNNNNNGC 4 cut(s) 18, 465, 591, 950
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 927
BstSCI CCNGG 1 cut(s) 460
BstSFI CTRYAG 2 cut(s) 423, 692
BstSNI TACGTA 1 cut(s) 898
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 567
Bsu15I ATCGAT 1 cut(s) 939
BsuRI GGCC 3 cut(s) 12, 459, 818
BsuTUI ATCGAT 1 cut(s) 939
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 2 cut(s) 343, 661
BtsI GCAGTG 1 cut(s) 892
BtsIMutI CAGTG 2 cut(s) 726, 892
Cac8I GCNNGC 1 cut(s) 925
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 3 cut(s) 157, 458, 500
ClaI ATCGAT 1 cut(s) 939
CseI GACGC 2 cut(s) 160, 929
CviAII CATG 4 cut(s) 586, 838, 847, 924
DpnI GATC 5 cut(s) 81, 301, 432, 789, 963
DpnII GATC 5 cut(s) 79, 299, 430, 787, 961
EaeI YGGCCR 1 cut(s) 816
Eam1104I CTCTTC 2 cut(s) 63, 340
EarI CTCTTC 2 cut(s) 63, 340
Ecl136II GAGCTC 1 cut(s) 419
Eco105I TACGTA 1 cut(s) 898
Eco130I CCWWGG 1 cut(s) 846
Eco24I GRGCYC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 937
Eco47I GGWCC 2 cut(s) 157, 500
Eco53kI GAGCTC 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 753
EcoRII CCWGG 1 cut(s) 460
EcoRV GATATC 1 cut(s) 937
EcoT14I CCWWGG 1 cut(s) 846
EcoT22I ATGCAT 2 cut(s) 596, 929
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 846
FaeI CATG 4 cut(s) 589, 841, 850, 927
FalI AAGNNNNNCTT 4 cut(s) 42, 74, 742, 774
FatI CATG 4 cut(s) 585, 837, 846, 923
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 5, 112, 115
FokI GGATG 2 cut(s) 350, 668
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 3 cut(s) 5, 112, 115
FspBI CTAG 1 cut(s) 471
GlaI GCGC 1 cut(s) 97
GluI GCNGC 3 cut(s) 5, 112, 115
HaeIII GGCC 3 cut(s) 12, 459, 818
HapII CCGG 2 cut(s) 42, 66
HgaI GACGC 2 cut(s) 160, 929
HhaI GCGC 1 cut(s) 98
Hin1II CATG 4 cut(s) 589, 841, 850, 927
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 317
HpaII CCGG 2 cut(s) 42, 66
HphI GGTGA 2 cut(s) 380, 883
Hpy166II GTNNAC 1 cut(s) 901
Hpy188I TCNGA 5 cut(s) 237, 299, 412, 787, 934
Hpy188III TCNNGA 4 cut(s) 66, 148, 283, 551
Hpy8I GTNNAC 1 cut(s) 901
Hpy99I CGWCG 2 cut(s) 80, 307
HpyAV CCTTC 1 cut(s) 691
HpyCH4III ACNGT 1 cut(s) 795
HpyCH4IV ACGT 4 cut(s) 396, 579, 897, 903
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 465, 591, 950
HpySE526I ACGT 4 cut(s) 396, 579, 897, 903
Hsp92II CATG 4 cut(s) 589, 841, 850, 927
HspAI GCGC 1 cut(s) 96
Kpn2I TCCGGA 1 cut(s) 65
Kzo9I GATC 5 cut(s) 79, 299, 430, 787, 961
LmnI GCTCC 3 cut(s) 125, 424, 534
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 5 cut(s) 394, 589, 730, 931, 940
MaeI CTAG 1 cut(s) 471
MaeII ACGT 4 cut(s) 396, 579, 897, 903
MaeIII GTNAC 2 cut(s) 368, 721
MalI GATC 5 cut(s) 81, 301, 432, 789, 963
MbiI CCGCTC 1 cut(s) 128
MboI GATC 5 cut(s) 79, 299, 430, 787, 961
MboII GAAGA 5 cut(s) 38, 50, 62, 357, 389
MhlI GDGCHC 1 cut(s) 421
MlsI TGGCCA 1 cut(s) 818
MluCI AATT 8 cut(s) 45, 215, 239, 523, 686, 708, 753, 802
MluNI TGGCCA 1 cut(s) 818
MlyI GAGTC 2 cut(s) 23, 416
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 7 cut(s) 94, 112, 283, 304, 341, 444, 449
Mox20I TGGCCA 1 cut(s) 818
Mph1103I ATGCAT 2 cut(s) 596, 929
MroI TCCGGA 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 57
MscI TGGCCA 1 cut(s) 818
MseI TTAA 2 cut(s) 218, 513
MslI CAYNNNNRTG 2 cut(s) 565, 869
Msp20I TGGCCA 1 cut(s) 818
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 2 cut(s) 42, 66
MspR9I CCNGG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 462
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 18, 465, 591, 950
NcoI CCATGG 1 cut(s) 846
NdeII GATC 5 cut(s) 79, 299, 430, 787, 961
NlaIII CATG 4 cut(s) 589, 841, 850, 927
NlaIV GGNNCC 2 cut(s) 536, 716
NmuCI GTSAC 2 cut(s) 368, 721
NsiI ATGCAT 2 cut(s) 596, 929
NspI RCATGY 1 cut(s) 927
OliI CACNNNNGTG 1 cut(s) 869
PaeI GCATGC 1 cut(s) 927
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 9 cut(s) 53, 69, 140, 151, 191, 483, 618, 728, 908
PkrI GCNGC 3 cut(s) 6, 113, 116
PleI GAGTC 2 cut(s) 23, 415
PpsI GAGTC 2 cut(s) 23, 415
Ppu21I YACGTR 1 cut(s) 898
PshBI ATTAAT 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 536, 716
PspPI GGNCC 3 cut(s) 157, 458, 500
PstI CTGCAG 2 cut(s) 427, 696
RseI CAYNNNNRTG 2 cut(s) 565, 869
SacI GAGCTC 1 cut(s) 421
SaqAI TTAA 2 cut(s) 218, 513
SatI GCNGC 3 cut(s) 5, 112, 115
Sau3AI GATC 5 cut(s) 79, 299, 430, 787, 961
Sau96I GGNCC 3 cut(s) 157, 458, 500
SchI GAGTC 2 cut(s) 23, 416
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 5 cut(s) 394, 589, 730, 931, 940
SfcI CTRYAG 2 cut(s) 423, 692
SinI GGWCC 2 cut(s) 157, 500
SmiMI CAYNNNNRTG 2 cut(s) 565, 869
SnaBI TACGTA 1 cut(s) 898
SphI GCATGC 1 cut(s) 927
Sse9I AATT 8 cut(s) 45, 215, 239, 523, 686, 708, 753, 802
SsiI CCGC 8 cut(s) 98, 111, 114, 122, 128, 545, 642, 869
SspI AATATT 1 cut(s) 826
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 1 cut(s) 846
TaaI ACNGT 1 cut(s) 795
TaiI ACGT 4 cut(s) 399, 582, 900, 906
TaqI TCGA 4 cut(s) 78, 302, 565, 939
TasI AATT 8 cut(s) 45, 215, 239, 523, 686, 708, 753, 802
TauI GCSGC 2 cut(s) 114, 117
TfiI GAWTC 9 cut(s) 53, 69, 140, 151, 191, 483, 618, 728, 908
Tru1I TTAA 2 cut(s) 218, 513
Tru9I TTAA 2 cut(s) 218, 513
TscAI CASTG 2 cut(s) 726, 892
TseFI GTSAC 2 cut(s) 368, 721
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 368, 721
TspDTI ATGAA 4 cut(s) 390, 699, 720, 724
TspGWI ACGGA 2 cut(s) 64, 740
TspRI CASTG 2 cut(s) 726, 892
VpaK11BI GGWCC 2 cut(s) 157, 500
VspI ATTAAT 1 cut(s) 218
XapI RAATTY 4 cut(s) 239, 686, 753, 802
XceI RCATGY 1 cut(s) 927
XcmI CCANNNNNNNNNTGG 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 1 cut(s) 471
Zsp2I ATGCAT 2 cut(s) 596, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.