Rmu_sc0004835.1_g000029

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004835.1
OG0000839
Physical Location & Seq
Reverse (-)
101556 .. 105484
3929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004835.1_g000029.1.cds

Sequence Viewer

Length: 1416 bp
atgttcatgggcttgcgtctacttgtgacattattgggtgtaatcacttcaacttcagcttcaaacatcactacgaaaatcgttaccactctacccggttactctggagatcttcctttcacattagaaaccggatatatcggcgtaggtgataatgaagaagtgcagctattttacgtttttgtcgagtctgagagaaaccctggacaagatccacttgtgttacgatttggtgcaggtccgggttgctctggtctccacggctttttctttgagagtggtccattatccttcaattctgcacattacaacgggagcctaccaacacttgaggacaacccttattcatggacaaaggggctcaacatcatattcttggatgcaccagttggtactggattctcctattcaacaacccaagatggttactatgtggatgaatataaatatgcggcacaaggctatgaattcctccagaagtggctggaggcacaccctgcatatgtggaaaatctactctacattagtggtgaatccttcagtggcttaatagttccgatggttgtacaaaagatagtagatggtaacgaaaatggaagtgtgcctctaatgaatatcaagggatatctgcttcagaacccagtaacggattcagttattgatggtaacgcagtaatcccttacgcccaccgactgactcttgtatctgatcaactttataaggcggctaaaacaagttgcaatggtgaatacgtgaatgtaaattcaagcaatgccgcatgcattgctgatatcgatgctattgatcagctcatcaaggatataaataaggacaatatcttggaaccagactgtactacttcattgccgagatcaaagaagctaagcacagctcgaagatatctcaaagagttgtccaaaggtttactgagttcaccaaccaacggtcccgcactttggtgtcgggagtataattacatgctcctatacatctgggcaaacactaaagctgtccgagatgctcttggtgtccgaatgggcacaaaattgttatggaaaccatgtaataccacattgacgggttacactcatgaagtcaccagttctctcagttatcatctcaatctcacaaaaagggctgacctacgtgctttgatatacagtggtgaccatgacatgtctgttcctcatattggtacacaagcatggataaatatactgaatttgactgtggatgagtactggaggacatggtcccttgatggacaaactaaaggatacacgaagaagttaataaatgattttttcaccttggtatttgctactgtgaagggagcaggccaccttgccgcagagtaccagccaaaggaagttgctagcttgattgatagatggatggcttactaccctctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

471

Amino Acids

52.29

Weight (kDa)

5.53

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
Acc36I ACCTGC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 19
AciI CCGC 5 cut(s) 452, 725, 777, 951, 1350
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 3 cut(s) 467, 763, 1222
AcuI CTGAAG 3 cut(s) 39, 523, 617
AfaI GTAC 6 cut(s) 394, 567, 856, 1198, 1241, 1358
AfiI CCNNNNNNNGG 5 cut(s) 646, 944, 957, 1193, 1366
AflIII ACRYGT 1 cut(s) 1176
AgsI TTSAA 5 cut(s) 51, 63, 295, 411, 768
AjnI CCWGG 1 cut(s) 202
AleI CACNNNNGTG 1 cut(s) 958
AluBI AGCT 7 cut(s) 59, 169, 811, 883, 893, 1010, 1380
AluI AGCT 7 cut(s) 59, 169, 811, 883, 893, 1010, 1380
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 206
AoxI GGCC 1 cut(s) 1339
ApeKI GCWGC 1 cut(s) 166
ApoI RAATTY 3 cut(s) 467, 763, 1222
AspS9I GGNCC 4 cut(s) 239, 281, 947, 1254
AsuC2I CCSGG 2 cut(s) 96, 243
AsuHPI GGTGA 7 cut(s) 161, 542, 758, 927, 1090, 1178, 1300
AsuNHI GCTAGC 1 cut(s) 1376
AvaII GGWCC 4 cut(s) 239, 281, 947, 1254
BaeGI GKGCMC 1 cut(s) 1043
BaeI ACNNNNGTAYC 2 cut(s) 687, 720
BanII GRGCYC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 178
BccI CCATC 7 cut(s) 416, 553, 575, 656, 1256, 1386, 1390
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 204
BciVI GTATCC 1 cut(s) 1271
BclI TGATCA 2 cut(s) 709, 805
BcnI CCSGG 2 cut(s) 96, 243
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 1377
BfuAI ACCTGC 1 cut(s) 227
BfuI GTATCC 1 cut(s) 1271
BglII AGATCT 1 cut(s) 109
BisI GCNGC 5 cut(s) 167, 453, 726, 777, 1350
BlpI GCTNAGC 1 cut(s) 884
BlsI GCNGC 5 cut(s) 168, 454, 727, 778, 1351
BmcAI AGTACT 1 cut(s) 1241
Bme1390I CCNGG 3 cut(s) 96, 204, 243
Bme18I GGWCC 4 cut(s) 239, 281, 947, 1254
BmgT120I GGNCC 4 cut(s) 239, 281, 947, 1254
BmiI GGNNCC 4 cut(s) 317, 846, 949, 1256
BmrFI CCNGG 3 cut(s) 96, 204, 243
BmrI ACTGGG 1 cut(s) 635
BmsI GCATC 3 cut(s) 370, 787, 1009
BmtI GCTAGC 1 cut(s) 1380
BmuI ACTGGG 1 cut(s) 635
BpmI CTGGAG 4 cut(s) 126, 458, 506, 1264
Bpu1102I GCTNAGC 1 cut(s) 884
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 96, 243
Bsa29I ATCGAT 1 cut(s) 795
BsaAI YACGTR 2 cut(s) 754, 1148
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 202, 259, 1311
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 5 cut(s) 646, 944, 957, 1193, 1366
Bse1I ACTGG 5 cut(s) 386, 400, 641, 1101, 1247
Bse3DI GCAATG 4 cut(s) 748, 778, 783, 863
BseBI CCWGG 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 3 cut(s) 202, 259, 1311
BseGI GGATG 4 cut(s) 385, 442, 1240, 1401
BseLI CCNNNNNNNGG 5 cut(s) 646, 944, 957, 1193, 1366
BseMI GCAATG 4 cut(s) 748, 778, 783, 863
BseMII CTCAG 3 cut(s) 183, 920, 1123
BseNI ACTGG 5 cut(s) 386, 400, 641, 1101, 1247
BseSI GKGCMC 1 cut(s) 1043
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 3 cut(s) 185, 255, 285
BshFI GGCC 1 cut(s) 1341
BshVI ATCGAT 1 cut(s) 795
BsiSI CCGG 3 cut(s) 96, 132, 242
BslFI GGGAC 2 cut(s) 933, 1240
BslI CCNNNNNNNGG 5 cut(s) 646, 944, 957, 1193, 1366
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 933, 1240
BsnI GGCC 1 cut(s) 1341
Bso31I GGTCTC 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 363, 1043
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 5 cut(s) 109, 211, 709, 805, 872
Bsp1720I GCTNAGC 1 cut(s) 884
BspACI CCGC 5 cut(s) 452, 725, 777, 951, 1350
BspANI GGCC 1 cut(s) 1341
BspCNI CTCAG 3 cut(s) 184, 921, 1122
BspDI ATCGAT 1 cut(s) 795
BspHI TCATGA 1 cut(s) 1090
BspLI GGNNCC 4 cut(s) 317, 846, 949, 1256
BspMI ACCTGC 1 cut(s) 227
BspOI GCTAGC 1 cut(s) 1380
BspPI GGATC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 4 cut(s) 748, 778, 783, 863
BsrGI TGTACA 1 cut(s) 565
BsrI ACTGG 5 cut(s) 386, 400, 641, 1101, 1247
BssECI CCNNGG 3 cut(s) 202, 259, 1311
BssMI GATC 5 cut(s) 109, 211, 709, 805, 872
BssT1I CCWWGG 1 cut(s) 1311
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 5 cut(s) 854, 947, 1163, 1231, 1327
BstAPI GCANNNNNTGC 2 cut(s) 497, 785
BstAUI TGTACA 1 cut(s) 565
BstBAI YACGTR 2 cut(s) 754, 1148
BstC8I GCNNGC 4 cut(s) 14, 781, 1339, 1378
BstDEI CTNAG 4 cut(s) 192, 884, 929, 1109
BstDSI CCRYGG 1 cut(s) 259
BstEII GGTNACC 1 cut(s) 1166
BstF5I GGATG 4 cut(s) 385, 442, 1240, 1401
BstKTI GATC 5 cut(s) 112, 214, 712, 808, 875
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 5 cut(s) 109, 211, 709, 805, 872
BstMWI GCNNNNNNNGC 2 cut(s) 497, 785
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 3 cut(s) 783, 982, 1180
BstPI GGTNACC 1 cut(s) 1166
BstSCI CCNGG 3 cut(s) 94, 202, 241
BstSLI GKGCMC 1 cut(s) 1043
BstV1I GCAGC 1 cut(s) 178
BstX2I RGATCY 2 cut(s) 109, 211
BstYI RGATCY 2 cut(s) 109, 211
Bsu15I ATCGAT 1 cut(s) 795
BsuI GTATCC 1 cut(s) 1271
BsuRI GGCC 1 cut(s) 1341
BsuTUI ATCGAT 1 cut(s) 795
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 4 cut(s) 385, 442, 1240, 1401
BtsIMutI CAGTG 2 cut(s) 547, 1168
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 4 cut(s) 14, 781, 1339, 1378
CciI TCATGA 1 cut(s) 1090
Cfr13I GGNCC 4 cut(s) 239, 281, 947, 1254
ClaI ATCGAT 1 cut(s) 795
CseI GACGC 1 cut(s) 5
Csp6I GTAC 6 cut(s) 393, 566, 855, 1197, 1240, 1357
CviQI GTAC 6 cut(s) 393, 566, 855, 1197, 1240, 1357
DdeI CTNAG 4 cut(s) 192, 884, 929, 1109
DpnI GATC 5 cut(s) 111, 213, 711, 807, 874
DpnII GATC 5 cut(s) 109, 211, 709, 805, 872
Eco130I CCWWGG 1 cut(s) 1311
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 260
Eco32I GATATC 3 cut(s) 626, 793, 902
Eco47I GGWCC 4 cut(s) 239, 281, 947, 1254
Eco57I CTGAAG 3 cut(s) 39, 523, 617
Eco91I GGTNACC 1 cut(s) 1166
EcoO65I GGTNACC 1 cut(s) 1166
EcoRI GAATTC 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 202
EcoRV GATATC 3 cut(s) 626, 793, 902
EcoT14I CCWWGG 1 cut(s) 1311
EcoT22I ATGCAT 1 cut(s) 785
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 1311
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 2 cut(s) 933, 1240
FauI CCCGC 1 cut(s) 958
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 2 cut(s) 709, 805
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 5 cut(s) 167, 453, 726, 777, 1350
FokI GGATG 4 cut(s) 392, 449, 1247, 1408
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 5 cut(s) 167, 453, 726, 777, 1350
FspBI CTAG 1 cut(s) 1377
GluI GCNGC 5 cut(s) 167, 453, 726, 777, 1350
GsuI CTGGAG 4 cut(s) 126, 458, 506, 1264
HaeIII GGCC 1 cut(s) 1341
HapII CCGG 3 cut(s) 96, 132, 242
HgaI GACGC 1 cut(s) 5
HinfI GANTC 5 cut(s) 188, 399, 533, 650, 697
HpaII CCGG 3 cut(s) 96, 132, 242
HphI GGTGA 7 cut(s) 161, 542, 758, 927, 1090, 1178, 1300
Hpy166II GTNNAC 4 cut(s) 20, 926, 935, 1199
Hpy188I TCNGA 6 cut(s) 193, 558, 636, 709, 1016, 1034
Hpy188III TCNNGA 4 cut(s) 105, 475, 965, 1091
Hpy8I GTNNAC 4 cut(s) 20, 926, 935, 1199
HpyAV CCTTC 3 cut(s) 301, 547, 1324
HpyCH4III ACNGT 5 cut(s) 854, 947, 1163, 1231, 1327
HpyCH4IV ACGT 3 cut(s) 177, 753, 1147
HpyCH4V TGCA 7 cut(s) 166, 236, 302, 383, 500, 741, 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 785
HpyF3I CTNAG 4 cut(s) 192, 884, 929, 1109
HpySE526I ACGT 3 cut(s) 177, 753, 1147
Ksp22I TGATCA 2 cut(s) 709, 805
Kzo9I GATC 5 cut(s) 109, 211, 709, 805, 872
LmnI GCTCC 3 cut(s) 315, 987, 1334
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 3 cut(s) 370, 787, 1009
MaeI CTAG 1 cut(s) 1377
MaeII ACGT 3 cut(s) 177, 753, 1147
MalI GATC 5 cut(s) 111, 213, 711, 807, 874
MboI GATC 5 cut(s) 109, 211, 709, 805, 872
MboII GAAGA 4 cut(s) 104, 170, 909, 1297
MflI RGATCY 2 cut(s) 109, 211
MhlI GDGCHC 2 cut(s) 363, 1043
MluCI AATT 6 cut(s) 295, 467, 763, 973, 1046, 1222
MlyI GAGTC 2 cut(s) 197, 691
MnlI CCTC 6 cut(s) 325, 481, 482, 615, 1197, 1239
Mph1103I ATGCAT 1 cut(s) 785
MseI TTAA 3 cut(s) 548, 1292, 1414
MslI CAYNNNNRTG 2 cut(s) 958, 1204
MspI CCGG 3 cut(s) 96, 132, 242
MspR9I CCNGG 3 cut(s) 96, 204, 243
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 497, 785
NciI CCSGG 2 cut(s) 96, 243
NdeI CATATG 1 cut(s) 502
NdeII GATC 5 cut(s) 109, 211, 709, 805, 872
NheI GCTAGC 1 cut(s) 1376
NlaIV GGNNCC 4 cut(s) 317, 846, 949, 1256
NmeAIII GCCGAG 1 cut(s) 894
NmuCI GTSAC 3 cut(s) 25, 1096, 1166
NsiI ATGCAT 1 cut(s) 785
NspI RCATGY 3 cut(s) 783, 982, 1180
OliI CACNNNNGTG 1 cut(s) 958
PaeI GCATGC 1 cut(s) 783
PagI TCATGA 1 cut(s) 1090
PciI ACATGT 1 cut(s) 1176
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 3 cut(s) 399, 533, 650
PflFI GACNNNGTC 1 cut(s) 1252
PkrI GCNGC 5 cut(s) 168, 454, 727, 778, 1351
PleI GAGTC 2 cut(s) 196, 691
PpsI GAGTC 2 cut(s) 196, 691
Ppu21I YACGTR 2 cut(s) 754, 1148
PscI ACATGT 1 cut(s) 1176
PsiI TTATAA 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 202
PspEI GGTNACC 1 cut(s) 1166
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 4 cut(s) 317, 846, 949, 1256
PspPI GGNCC 4 cut(s) 239, 281, 947, 1254
PsuI RGATCY 2 cut(s) 109, 211
PsyI GACNNNGTC 1 cut(s) 1252
RsaI GTAC 6 cut(s) 394, 567, 856, 1198, 1241, 1358
RsaNI GTAC 6 cut(s) 393, 566, 855, 1197, 1240, 1357
RseI CAYNNNNRTG 2 cut(s) 958, 1204
SaqAI TTAA 3 cut(s) 548, 1292, 1414
SatI GCNGC 5 cut(s) 167, 453, 726, 777, 1350
Sau3AI GATC 5 cut(s) 109, 211, 709, 805, 872
Sau96I GGNCC 4 cut(s) 239, 281, 947, 1254
ScaI AGTACT 1 cut(s) 1241
SchI GAGTC 2 cut(s) 197, 691
ScrFI CCNGG 3 cut(s) 96, 204, 243
SduI GDGCHC 2 cut(s) 363, 1043
SfaNI GCATC 3 cut(s) 370, 787, 1009
SinI GGWCC 4 cut(s) 239, 281, 947, 1254
SmiMI CAYNNNNRTG 2 cut(s) 958, 1204
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SphI GCATGC 1 cut(s) 783
Sse9I AATT 6 cut(s) 295, 467, 763, 973, 1046, 1222
SsiI CCGC 5 cut(s) 452, 725, 777, 951, 1350
SspMI CTAG 1 cut(s) 1377
StyD4I CCNGG 3 cut(s) 94, 202, 241
StyI CCWWGG 1 cut(s) 1311
TaaI ACNGT 5 cut(s) 854, 947, 1163, 1231, 1327
TaiI ACGT 3 cut(s) 180, 756, 1150
TaqI TCGA 3 cut(s) 186, 795, 895
TasI AATT 6 cut(s) 295, 467, 763, 973, 1046, 1222
TatI WGTACW 3 cut(s) 565, 854, 1239
TauI GCSGC 4 cut(s) 455, 728, 779, 1352
TfiI GAWTC 3 cut(s) 399, 533, 650
Tru1I TTAA 3 cut(s) 548, 1292, 1414
Tru9I TTAA 3 cut(s) 548, 1292, 1414
TscAI CASTG 2 cut(s) 547, 1168
TseFI GTSAC 3 cut(s) 25, 1096, 1166
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 3 cut(s) 25, 1096, 1166
TspDTI ATGAA 7 cut(s) 171, 336, 453, 480, 626, 852, 1107
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 2 cut(s) 547, 1168
Tth111I GACNNNGTC 1 cut(s) 1252
VpaK11BI GGWCC 4 cut(s) 239, 281, 947, 1254
XapI RAATTY 3 cut(s) 467, 763, 1222
XceI RCATGY 3 cut(s) 783, 982, 1180
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 1 cut(s) 1377
ZrmI AGTACT 1 cut(s) 1241
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.