Rh4BG082500

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000839
Physical Location & Seq
Reverse (-)
14358836 .. 14366584
7749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG082500.1

Sequence Viewer

Length: 945 bp
ATGAGCAATAAAGTTACTTTATGTGTCGGTTATTCTGGTGATCTTCCTTTCGCTTTAGAATCTGGATATATTGGTGTAGGAGACGAGGAAGAAGTGCAGCTGTTTTACTATTTTATCGAGTCTCAGAGGAACCCTGCACAAGATCCTCTGCTGTATTGGATCACTGGAGGCCCTGGTTGCTCTAGTCTTGCTGGATTTTTCTTTGAGAGTGGTCCATTGGTTTTCAACTACAAAGATTACAATGGAAGCCTACCAACACTTCAGGACAATCCTTATGCATGGACACAGGGACTCAACATCATATACTTGGATGCACCAGTTGGTGCCGGATACTCCTACTCAGAAACCCAAAGTGGTTATGTTATGGATGACTATAAATTTGTGGCTCAAATTTATGAATTTCTGCAAAAGTGGCTAGAGGCACACCCGACATATTTGGAAAATCTACTCTATATTGGTGGTGACTCTTATTCTGGCATACCTATGCCCATGCTTGCAGAACAAATAATTGATGGTAATGAAAATGGAAGTGTGCCTATGATGAATCTCAAAGGGTATGTGCTTGGGAACCCAGTAACTGATTCTGTAATTGATATGAATGCAAGAGTTACTTATGCTCACAGGTTGTCTCTTGTTTCGGATCAACTGTATAAGGCTGCTAAAACAAGTTGCAATGGAGATTATGTAAATGTAGATTCAAGCAATGATGCATGCATTGCAGATATAGATGCCATTTCTGAGCTCACCAATGACATAAATTTGGTACACATCTTGGAACCATATTGTAGTAATGCATTGCCTACAGCAAAGGAGATGTGTCAAGCTCGTAGATACCTCAAAGACTTGTCCAAAGGTTTACTAAGTTCACCACCTAACGGTCCTGCACTTTGGTGTCGAGTAATGACTCTCTCTCTCCAAATATTATATCTTTCTTTTCTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

314

Amino Acids

34.83

Weight (kDa)

4.3

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 13 - 266 9.4e-82 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AclWI GGATC 3 cut(s) 137, 167, 648
AcsI RAATTY 4 cut(s) 377, 390, 398, 757
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 765
AfiI CCNNNNNNNGG 1 cut(s) 875
AgsI TTSAA 2 cut(s) 226, 699
AjnI CCWGG 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 889
AluBI AGCT 3 cut(s) 100, 742, 824
AluI AGCT 3 cut(s) 100, 742, 824
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 3 cut(s) 75, 126, 633
AlwI GGATC 3 cut(s) 137, 167, 648
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 97, 656
ApoI RAATTY 4 cut(s) 377, 390, 398, 757
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AspS9I GGNCC 3 cut(s) 170, 212, 878
AsuHPI GGTGA 4 cut(s) 50, 473, 736, 858
AvaII GGWCC 2 cut(s) 212, 878
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 2 cut(s) 109, 643
BccI CCATC 1 cut(s) 506
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 323
BcoDI GTCTC 3 cut(s) 75, 126, 633
BfaI CTAG 2 cut(s) 183, 416
BfmI CTRYAG 1 cut(s) 801
BfuI GTATCC 1 cut(s) 323
BisI GCNGC 2 cut(s) 98, 657
BlsI GCNGC 2 cut(s) 99, 658
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 2 cut(s) 212, 878
BmgT120I GGNCC 3 cut(s) 170, 212, 878
BmiI GGNNCC 4 cut(s) 131, 325, 569, 777
BmrFI CCNGG 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 3 cut(s) 301, 697, 718
BmuI ACTGGG 1 cut(s) 566
BpmI CTGGAG 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 875
Bse1I ACTGG 3 cut(s) 169, 317, 572
Bse3DI GCAATG 4 cut(s) 679, 709, 714, 794
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 316, 373
BseLI CCNNNNNNNGG 1 cut(s) 875
BseMI GCAATG 4 cut(s) 679, 709, 714, 794
BseMII CTCAG 3 cut(s) 137, 354, 729
BseNI ACTGG 3 cut(s) 169, 317, 572
BseXI GCAGC 2 cut(s) 109, 643
BsgI GTGCAG 3 cut(s) 116, 120, 867
BshFI GGCC 1 cut(s) 171
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 744
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 875
BsmAI GTCTC 3 cut(s) 75, 126, 633
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 744
Bsp143I GATC 4 cut(s) 40, 142, 159, 640
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 3 cut(s) 136, 353, 730
BspLI GGNNCC 4 cut(s) 131, 325, 569, 777
BspPI GGATC 3 cut(s) 137, 167, 648
BspT107I GGYRCC 1 cut(s) 323
BsrDI GCAATG 4 cut(s) 679, 709, 714, 794
BsrI ACTGG 3 cut(s) 169, 317, 572
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 4 cut(s) 40, 142, 159, 640
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 648, 878
BstAPI GCANNNNNTGC 1 cut(s) 716
BstC8I GCNNGC 2 cut(s) 495, 712
BstDEI CTNAG 4 cut(s) 123, 340, 738, 860
BstF5I GGATG 2 cut(s) 316, 373
BstKTI GATC 4 cut(s) 43, 145, 162, 643
BstMAI GTCTC 3 cut(s) 75, 126, 633
BstMBI GATC 4 cut(s) 40, 142, 159, 640
BstMWI GCNNNNNNNGC 3 cut(s) 177, 412, 716
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 714
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 801
BstV1I GCAGC 2 cut(s) 109, 643
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuI GTATCC 1 cut(s) 323
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 316, 373
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 495, 712
CaiI CAGNNNCTG 1 cut(s) 578
Cfr13I GGNCC 3 cut(s) 170, 212, 878
Csp6I GTAC 1 cut(s) 764
CviAII CATG 3 cut(s) 279, 490, 711
CviJI RGCY 8 cut(s) 100, 171, 249, 386, 415, 656, 742, 824
CviKI_1 RGCY 8 cut(s) 100, 171, 249, 386, 415, 656, 742, 824
CviQI GTAC 1 cut(s) 764
DdeI CTNAG 4 cut(s) 123, 340, 738, 860
DpnI GATC 4 cut(s) 42, 144, 161, 642
DpnII GATC 4 cut(s) 40, 142, 159, 640
Ecl136II GAGCTC 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 744
Eco47I GGWCC 2 cut(s) 212, 878
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 4 cut(s) 280, 712, 716, 796
EcoT38I GRGCYC 1 cut(s) 744
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 3 cut(s) 282, 493, 714
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FaqI GGGAC 1 cut(s) 303
FatI CATG 3 cut(s) 278, 489, 710
Fnu4HI GCNGC 2 cut(s) 98, 657
FokI GGATG 2 cut(s) 323, 380
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 2 cut(s) 98, 657
FspBI CTAG 2 cut(s) 183, 416
GluI GCNGC 2 cut(s) 98, 657
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 327
Hin1II CATG 3 cut(s) 282, 493, 714
HinfI GANTC 8 cut(s) 59, 119, 291, 464, 544, 581, 695, 904
HpaII CCGG 1 cut(s) 327
HphI GGTGA 4 cut(s) 50, 473, 736, 858
Hpy166II GTNNAC 3 cut(s) 766, 857, 866
Hpy188I TCNGA 4 cut(s) 126, 343, 640, 739
Hpy188III TCNNGA 2 cut(s) 63, 263
Hpy8I GTNNAC 3 cut(s) 766, 857, 866
HpyCH4III ACNGT 2 cut(s) 648, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 412, 716
HpyF3I CTNAG 4 cut(s) 123, 340, 738, 860
Hsp92II CATG 3 cut(s) 282, 493, 714
Kzo9I GATC 4 cut(s) 40, 142, 159, 640
Lsp1109I GCAGC 2 cut(s) 109, 643
LweI GCATC 3 cut(s) 301, 697, 718
MaeI CTAG 2 cut(s) 183, 416
MaeIII GTNAC 4 cut(s) 13, 461, 574, 607
MalI GATC 4 cut(s) 42, 144, 161, 642
MboI GATC 4 cut(s) 40, 142, 159, 640
MboII GAAGA 2 cut(s) 35, 101
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 744
MluCI AATT 6 cut(s) 377, 390, 398, 507, 588, 757
MlyI GAGTC 4 cut(s) 128, 285, 458, 898
MnlI CCTC 6 cut(s) 79, 120, 156, 161, 412, 845
Mph1103I ATGCAT 4 cut(s) 280, 712, 716, 796
MseI TTAA 1 cut(s) 943
MslI CAYNNNNRTG 2 cut(s) 482, 889
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 177, 412, 716
NdeII GATC 4 cut(s) 40, 142, 159, 640
NlaIII CATG 3 cut(s) 282, 493, 714
NlaIV GGNNCC 4 cut(s) 131, 325, 569, 777
NmuCI GTSAC 1 cut(s) 461
NsiI ATGCAT 4 cut(s) 280, 712, 716, 796
NspI RCATGY 1 cut(s) 714
OliI CACNNNNGTG 1 cut(s) 889
PaeI GCATGC 1 cut(s) 714
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 4 cut(s) 59, 544, 581, 695
PkrI GCNGC 2 cut(s) 99, 658
PleI GAGTC 4 cut(s) 127, 285, 458, 898
PpsI GAGTC 4 cut(s) 127, 285, 458, 898
Psp124BI GAGCTC 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 4 cut(s) 131, 325, 569, 777
PspPI GGNCC 3 cut(s) 170, 212, 878
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 765
RsaNI GTAC 1 cut(s) 764
RseI CAYNNNNRTG 2 cut(s) 482, 889
SacI GAGCTC 1 cut(s) 744
SaqAI TTAA 1 cut(s) 943
SatI GCNGC 2 cut(s) 98, 657
Sau3AI GATC 4 cut(s) 40, 142, 159, 640
Sau96I GGNCC 3 cut(s) 170, 212, 878
SchI GAGTC 4 cut(s) 128, 285, 458, 898
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 744
SetI ASST 8 cut(s) 102, 484, 626, 744, 826, 837, 856, 874
SfaNI GCATC 3 cut(s) 301, 697, 718
SfcI CTRYAG 1 cut(s) 801
SinI GGWCC 2 cut(s) 212, 878
SmiMI CAYNNNNRTG 2 cut(s) 482, 889
SphI GCATGC 1 cut(s) 714
Sse9I AATT 6 cut(s) 377, 390, 398, 507, 588, 757
SspI AATATT 1 cut(s) 921
SspMI CTAG 2 cut(s) 183, 416
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 648, 878
TaqI TCGA 2 cut(s) 117, 895
TasI AATT 6 cut(s) 377, 390, 398, 507, 588, 757
TfiI GAWTC 4 cut(s) 59, 544, 581, 695
Tru1I TTAA 1 cut(s) 943
Tru9I TTAA 1 cut(s) 943
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 2 cut(s) 97, 656
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 4 cut(s) 411, 534, 557, 611
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 212, 878
XapI RAATTY 4 cut(s) 377, 390, 398, 757
XceI RCATGY 1 cut(s) 714
XspI CTAG 2 cut(s) 183, 416
Zsp2I ATGCAT 4 cut(s) 280, 712, 716, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.