Rorug04G0007600

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000839
Physical Location & Seq
Forward (+)
1323497 .. 1325382
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0007600.1

Sequence Viewer

Length: 858 bp
ATGGATACACAACGACGATGGGACGAGTTAAACCCTGACTGTTTACTAAACGTGTTTAGAAGACTTGGAATGGAGGAACTGCTCTATGATGTCCCATTCGTGTGCAAGTCATGGCATAGAGCAAGCCACAATCCATCATGCTGGCAATCTCTCATTTTTCCAGACATTGATCATAATGCTGTTGACGAAGATGAGAATATCAAATATGATGCTTCCTCTGCGGACAATGAGTCCAAACCTCAGAGTTTTGGTGCTTTCTATGACAGATTCATGCATGAATATCAAATTGACAGCGGTCGTTTCTCAATCGGTGGTATTATAAAGGTTGTCATCAAGCGCAGCAACGGACTTCCTACCGTTCTTAAGCTACCTCAAAACTCCACAGAAGAAGTTCTTACGTCTGTTTCAGATGTGTGTCCTGGACTTAAGTTTTTGTCTCTATCGTGTGACTACAAGTTCTCAATCCTTTCAAAGTACTCCCTCGCAGTTCAGGAACTGATTACGAATTGTACAAATTTGGAGACATTGTCATTGGATAGCAGCTGCCACCGCTACCGCAACCAGAGATTTAATCATGTTGCACTCCTGGTACAGATCAGCATTCACTGCAAGAATGTTGTAGATTTGCGCGTGTCGAATTCCCAGATATGTAAATATGGGACATTCTCGATTGCCACCTTGCTGCCTAAAATAAAGTACTTGAGCTTTAGGAAGTGTGACATTGATCAAAAAGATCTCATCAGCTTACTGCTGAGGTGCAAAGAGCTAGTGCTTTTGGATATGAGAGATTGTGTAGGTTTTAAGGTTGACGATGAAATATCTAAGCTTGCTTCTCATATTAGCACATTTGTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

285

Amino Acids

32.7

Weight (kDa)

6.24

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AccII CGCG 1 cut(s) 630
AciI CCGC 4 cut(s) 221, 294, 550, 556
AcsI RAATTY 2 cut(s) 514, 637
AfaI GTAC 4 cut(s) 476, 511, 591, 698
AflII CTTAAG 2 cut(s) 362, 425
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 471
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 418, 585
AleI CACNNNNGTG 1 cut(s) 848
AluBI AGCT 6 cut(s) 367, 543, 705, 744, 766, 826
AluI AGCT 6 cut(s) 367, 543, 705, 744, 766, 826
Alw26I GTCTC 2 cut(s) 441, 515
AlwNI CAGNNNCTG 1 cut(s) 496
ApeKI GCWGC 4 cut(s) 339, 540, 543, 682
ApoI RAATTY 2 cut(s) 514, 637
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 2 cut(s) 339, 630
BbsI GAAGAC 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 752
BbvI GCAGC 4 cut(s) 351, 530, 552, 669
BccI CCATC 2 cut(s) 12, 142
BciT130I CCWGG 2 cut(s) 420, 587
BclI TGATCA 2 cut(s) 169, 724
BcoDI GTCTC 2 cut(s) 441, 515
BfaI CTAG 1 cut(s) 767
BfrI CTTAAG 2 cut(s) 362, 425
BglII AGATCT 1 cut(s) 733
BisI GCNGC 4 cut(s) 340, 541, 544, 683
BlsI GCNGC 4 cut(s) 341, 542, 545, 684
BmcAI AGTACT 2 cut(s) 476, 698
Bme1390I CCNGG 2 cut(s) 420, 587
BmeRI GACNNNNNGTC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 420, 587
BmsI GCATC 1 cut(s) 199
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
BseBI CCWGG 2 cut(s) 420, 587
BseMII CTCAG 2 cut(s) 254, 743
BseXI GCAGC 4 cut(s) 351, 530, 552, 669
Bsh1236I CGCG 1 cut(s) 630
Bsh1285I CGRYCG 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 298
BslFI GGGAC 3 cut(s) 35, 77, 673
BsmAI GTCTC 2 cut(s) 441, 515
BsmFI GGGAC 3 cut(s) 35, 77, 673
BsmI GAATGC 1 cut(s) 600
Bsp1407I TGTACA 1 cut(s) 509
Bsp143I GATC 4 cut(s) 169, 594, 724, 733
BspACI CCGC 4 cut(s) 221, 294, 550, 556
BspCNI CTCAG 2 cut(s) 253, 744
BspFNI CGCG 1 cut(s) 630
BspTI CTTAAG 2 cut(s) 362, 425
BsrGI TGTACA 1 cut(s) 509
BssMI GATC 4 cut(s) 169, 594, 724, 733
Bst2UI CCWGG 2 cut(s) 420, 587
Bst4CI ACNGT 2 cut(s) 41, 358
BstAFI CTTAAG 2 cut(s) 362, 425
BstAPI GCANNNNNTGC 1 cut(s) 606
BstAUI TGTACA 1 cut(s) 509
BstC8I GCNNGC 3 cut(s) 124, 143, 828
BstDEI CTNAG 3 cut(s) 240, 752, 822
BstFNI CGCG 1 cut(s) 630
BstHHI GCGC 2 cut(s) 339, 630
BstKTI GATC 4 cut(s) 172, 597, 727, 736
BstMAI GTCTC 2 cut(s) 441, 515
BstMBI GATC 4 cut(s) 169, 594, 724, 733
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 218, 549, 606
BstNI CCWGG 2 cut(s) 420, 587
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 418, 585
BstUI CGCG 1 cut(s) 630
BstV1I GCAGC 4 cut(s) 351, 530, 552, 669
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 733
BstXI CCANNNNNNTGG 1 cut(s) 141
BstYI RGATCY 1 cut(s) 733
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 604
Cac8I GCNNGC 3 cut(s) 124, 143, 828
CaiI CAGNNNCTG 1 cut(s) 496
CfoI GCGC 2 cut(s) 339, 630
Csp6I GTAC 4 cut(s) 475, 510, 590, 697
CviAII CATG 5 cut(s) 111, 138, 271, 275, 575
CviJI RGCY 7 cut(s) 126, 367, 543, 705, 744, 766, 826
CviKI_1 RGCY 7 cut(s) 126, 367, 543, 705, 744, 766, 826
CviQI GTAC 4 cut(s) 475, 510, 590, 697
DdeI CTNAG 3 cut(s) 240, 752, 822
DpnI GATC 4 cut(s) 171, 596, 726, 735
DpnII GATC 4 cut(s) 169, 594, 724, 733
DriI GACNNNNNGTC 1 cut(s) 229
Eam1105I GACNNNNNGTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 637
EcoRII CCWGG 2 cut(s) 418, 585
EcoT22I ATGCAT 1 cut(s) 276
FaeI CATG 5 cut(s) 114, 141, 274, 278, 578
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 3 cut(s) 35, 77, 673
FatI CATG 5 cut(s) 110, 137, 270, 274, 574
FbaI TGATCA 2 cut(s) 169, 724
Fnu4HI GCNGC 4 cut(s) 340, 541, 544, 683
Fsp4HI GCNGC 4 cut(s) 340, 541, 544, 683
FspBI CTAG 1 cut(s) 767
GlaI GCGC 2 cut(s) 338, 629
GluI GCNGC 4 cut(s) 340, 541, 544, 683
HhaI GCGC 2 cut(s) 339, 630
Hin1II CATG 5 cut(s) 114, 141, 274, 278, 578
Hin6I GCGC 2 cut(s) 337, 628
HinP1I GCGC 2 cut(s) 337, 628
HincII GTYRAC 2 cut(s) 184, 808
HindII GTYRAC 2 cut(s) 184, 808
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 2 cut(s) 230, 267
Hpy166II GTNNAC 3 cut(s) 44, 184, 808
Hpy188I TCNGA 2 cut(s) 243, 409
Hpy188III TCNNGA 3 cut(s) 161, 491, 667
Hpy8I GTNNAC 3 cut(s) 44, 184, 808
Hpy99I CGWCG 1 cut(s) 18
HpyCH4III ACNGT 2 cut(s) 41, 358
HpyCH4IV ACGT 2 cut(s) 51, 398
HpyCH4V TGCA 5 cut(s) 105, 274, 581, 609, 759
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 549, 606
HpyF3I CTNAG 3 cut(s) 240, 752, 822
HpySE526I ACGT 2 cut(s) 51, 398
Hsp92II CATG 5 cut(s) 114, 141, 274, 278, 578
HspAI GCGC 2 cut(s) 337, 628
Ksp22I TGATCA 2 cut(s) 169, 724
Kzo9I GATC 4 cut(s) 169, 594, 724, 733
Lsp1109I GCAGC 4 cut(s) 351, 530, 552, 669
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 767
MaeII ACGT 2 cut(s) 51, 398
MaeIII GTNAC 2 cut(s) 446, 716
MalI GATC 4 cut(s) 171, 596, 726, 735
MboI GATC 4 cut(s) 169, 594, 724, 733
MboII GAAGA 3 cut(s) 72, 200, 398
MflI RGATCY 1 cut(s) 733
MluCI AATT 4 cut(s) 285, 505, 514, 637
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 6 cut(s) 67, 226, 249, 381, 491, 747
Mph1103I ATGCAT 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 6 cut(s) 29, 363, 426, 570, 801, 856
MslI CAYNNNNRTG 2 cut(s) 100, 848
MspA1I CMGCKG 2 cut(s) 294, 543
MspCI CTTAAG 2 cut(s) 362, 425
MspR9I CCNGG 2 cut(s) 420, 587
Mva1269I GAATGC 1 cut(s) 600
MvaI CCWGG 2 cut(s) 420, 587
MvnI CGCG 1 cut(s) 630
MwoI GCNNNNNNNGC 3 cut(s) 218, 549, 606
NdeII GATC 4 cut(s) 169, 594, 724, 733
NlaIII CATG 5 cut(s) 114, 141, 274, 278, 578
NmuCI GTSAC 2 cut(s) 446, 716
NsiI ATGCAT 1 cut(s) 276
OliI CACNNNNGTG 1 cut(s) 848
PctI GAATGC 1 cut(s) 600
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 267
PflFI GACNNNGTC 1 cut(s) 526
PfoI TCCNGGA 1 cut(s) 418
PkrI GCNGC 4 cut(s) 341, 542, 545, 684
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PshAI GACNNNNGTC 1 cut(s) 294
PsiI TTATAA 1 cut(s) 320
Psp6I CCWGG 2 cut(s) 418, 585
PspGI CCWGG 2 cut(s) 418, 585
PstNI CAGNNNCTG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 733
PsyI GACNNNGTC 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 543
RsaI GTAC 4 cut(s) 476, 511, 591, 698
RsaNI GTAC 4 cut(s) 475, 510, 590, 697
RseI CAYNNNNRTG 2 cut(s) 100, 848
SaqAI TTAA 6 cut(s) 29, 363, 426, 570, 801, 856
SatI GCNGC 4 cut(s) 340, 541, 544, 683
Sau3AI GATC 4 cut(s) 169, 594, 724, 733
ScaI AGTACT 2 cut(s) 476, 698
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 420, 587
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 100, 848
SmlI CTYRAG 3 cut(s) 362, 425, 700
SmoI CTYRAG 3 cut(s) 362, 425, 700
Sse9I AATT 4 cut(s) 285, 505, 514, 637
SsiI CCGC 4 cut(s) 221, 294, 550, 556
SspMI CTAG 1 cut(s) 767
StyD4I CCNGG 2 cut(s) 418, 585
TaaI ACNGT 2 cut(s) 41, 358
TaiI ACGT 2 cut(s) 54, 401
TaqI TCGA 2 cut(s) 635, 668
TasI AATT 4 cut(s) 285, 505, 514, 637
TatI WGTACW 3 cut(s) 474, 509, 696
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 6 cut(s) 29, 363, 426, 570, 801, 856
Tru9I TTAA 6 cut(s) 29, 363, 426, 570, 801, 856
TscAI CASTG 1 cut(s) 611
TseFI GTSAC 2 cut(s) 446, 716
TseI GCWGC 4 cut(s) 339, 540, 543, 682
Tsp45I GTSAC 2 cut(s) 446, 716
TspDTI ATGAA 3 cut(s) 259, 291, 828
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 1 cut(s) 611
Tth111I GACNNNGTC 1 cut(s) 526
Vha464I CTTAAG 2 cut(s) 362, 425
XapI RAATTY 2 cut(s) 514, 637
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 1 cut(s) 767
ZrmI AGTACT 2 cut(s) 476, 698
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.