Rh4BG082300

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000839
Physical Location & Seq
Forward (+)
14328188 .. 14333051
4864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG082300.1

Sequence Viewer

Length: 1074 bp
ATGCCTACCATGACGAGGTTGATGGGTTTGCGACTACTTCTTGCATTTGTTTTCACTCTCATACTTGCTTCAACTTCTTGGGCAAATGTCACTACCACCACAATTACCACTCTACCTGGTTACTCTGGCGACCTCCCTTTCTCTTTCGAAACTGGGTACGTTGGTGTAGGTGACAATGAAGAAGTGCAGCTATTTTACTACTTTGTCGAGTCTCAGAGGACTCCAGCACAGGACCCTCTGCTGTTGTGGATCCCCGCAGGACCTGGTTGCTCTGGTCAGATTGTACTCTTCTTTGAGAGTGGTCCACTACTTTTCGACTATGGTGAATACGATGGGAGCCTACCAACACTTCACGACAACCCTTTCACATGGACAGAGAGCCTCAACCTCTTATACGTGGATGCACCTGTTGGTGCTGGATACTCCTACTCAACAACCCAAAGTGGTTATGTAATGGACGACTACAAACATGTGGCACAACTCTATGAATTTCTGCAGAAGTGGTTAGATGCACACCCTACGTACCTGAAAAACATACTCTACATTGGTGGTGACTCCTACTCTGGAATGCCTGTTCCCATGCTTGCACAAACAATAGTCAATGGTAATGAAAATGGAAGTATCCCCATGATGAATTTCAGAGGATATGTGATTGGGAACCCAGTAACTGATACAGCAGTTGATGGTAATGCACAAATTCCTATCGCTCACCGGCTGTCTCTTATATCGGATCAACTATATAAGTCACTTAAAACAAGTTGCCACGGCGAATATGTAACTGTAAATTCCAGCAATCATGCATGCATTGCAGATCTTGATGCCTTTGATGCACTAACGAGTGACATAAATACATTACATGTCTTGGAACCATTATGTAGTAATGGTTTACCTACACAAAAGGAAATGGTTTTGACCCGGAGATATCTCAAGGAAACATCTAGCGGTTTACAAAGATCACGACCTAACGGCCCTGCACTTTGGTGTCGGGGCACGAAAAGGCTTTGGCAACACTGTAATACGACATTGGACTACACTGAAGATGTCACCAGCTCGACTTTGAACAATCAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

357

Amino Acids

39.57

Weight (kDa)

4.79

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 39 - 310 1.7e-75 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 255, 942
AclWI GGATC 3 cut(s) 244, 257, 738
AcsI RAATTY 4 cut(s) 488, 634, 696, 784
AcuI CTGAAG 1 cut(s) 1056
AfaI GTAC 3 cut(s) 158, 285, 524
AfiI CCNNNNNNNGG 1 cut(s) 15
AflIII ACRYGT 2 cut(s) 469, 856
AgsI TTSAA 2 cut(s) 72, 1060
AjnI CCWGG 2 cut(s) 115, 262
AleI CACNNNNGTG 1 cut(s) 979
AloI GAACNNNNNNTCC 2 cut(s) 558, 590
AluBI AGCT 2 cut(s) 190, 1050
AluI AGCT 2 cut(s) 190, 1050
Alw26I GTCTC 2 cut(s) 216, 723
AlwI GGATC 3 cut(s) 244, 257, 738
AlwNI CAGNNNCTG 2 cut(s) 263, 668
AoxI GGCC 1 cut(s) 967
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 4 cut(s) 488, 634, 696, 784
AspS9I GGNCC 4 cut(s) 232, 260, 302, 968
AsuC2I CCSGG 1 cut(s) 916
AsuHPI GGTGA 5 cut(s) 182, 335, 563, 701, 1036
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 3 cut(s) 232, 260, 302
BaeGI GKGCMC 1 cut(s) 992
BaeI ACNNNNGTAYC 4 cut(s) 148, 181, 663, 696
BamHI GGATCC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 199
BccI CCATC 3 cut(s) 16, 326, 677
BceAI ACGGC 2 cut(s) 781, 982
BciT130I CCWGG 2 cut(s) 117, 264
BciVI GTATCC 2 cut(s) 413, 632
BcnI CCSGG 1 cut(s) 916
BcoDI GTCTC 2 cut(s) 216, 723
BfaI CTAG 1 cut(s) 939
BfmI CTRYAG 1 cut(s) 494
BfuI GTATCC 2 cut(s) 413, 632
BglII AGATCT 1 cut(s) 811
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 3 cut(s) 117, 264, 916
Bme18I GGWCC 3 cut(s) 232, 260, 302
BmgT120I GGNCC 4 cut(s) 232, 260, 302, 968
BmiI GGNNCC 5 cut(s) 234, 251, 338, 659, 867
BmrFI CCNGG 3 cut(s) 117, 264, 916
BmrI ACTGGG 2 cut(s) 162, 656
BmsI GCATC 4 cut(s) 391, 499, 808, 817
BmuI ACTGGG 2 cut(s) 162, 656
BpmI CTGGAG 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 1 cut(s) 916
BsaAI YACGTR 2 cut(s) 397, 522
BsaJI CCNNGG 1 cut(s) 763
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 711
Bse1I ACTGG 2 cut(s) 157, 662
Bse3DI GCAATG 1 cut(s) 804
BseBI CCWGG 2 cut(s) 117, 264
BseDI CCNNGG 1 cut(s) 763
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 157, 662
BseSI GKGCMC 1 cut(s) 992
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 2 cut(s) 206, 957
BshFI GGCC 1 cut(s) 969
BsiSI CCGG 2 cut(s) 712, 916
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 2 cut(s) 216, 723
BsmI GAATGC 1 cut(s) 573
BsnI GGCC 1 cut(s) 969
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 992
Bsp143I GATC 4 cut(s) 249, 730, 811, 953
BspACI CCGC 2 cut(s) 255, 942
BspANI GGCC 1 cut(s) 969
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 5 cut(s) 234, 251, 338, 659, 867
BspMAI CTGCAG 1 cut(s) 498
BspPI GGATC 3 cut(s) 244, 257, 738
BspT104I TTCGAA 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 804
BsrFI RCCGGY 1 cut(s) 711
BsrI ACTGG 2 cut(s) 157, 662
BssAI RCCGGY 1 cut(s) 711
BssECI CCNNGG 1 cut(s) 763
BssMI GATC 4 cut(s) 249, 730, 811, 953
Bst2UI CCWGG 2 cut(s) 117, 264
Bst4CI ACNGT 2 cut(s) 781, 1013
Bst6I CTCTTC 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 806
BstBAI YACGTR 2 cut(s) 397, 522
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 585, 802
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 763
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 4 cut(s) 252, 733, 814, 956
BstMAI GTCTC 2 cut(s) 216, 723
BstMBI GATC 4 cut(s) 249, 730, 811, 953
BstMWI GCNNNNNNNGC 2 cut(s) 806, 827
BstNI CCWGG 2 cut(s) 117, 264
BstNSI RCATGY 3 cut(s) 473, 804, 860
BstSCI CCNGG 3 cut(s) 115, 262, 914
BstSFI CTRYAG 1 cut(s) 494
BstSLI GKGCMC 1 cut(s) 992
BstSNI TACGTA 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 249, 811
BstYI RGATCY 2 cut(s) 249, 811
BsuI GTATCC 2 cut(s) 413, 632
BsuRI GGCC 1 cut(s) 969
BtgI CCRYGG 1 cut(s) 763
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 2 cut(s) 1009, 1032
Cac8I GCNNGC 2 cut(s) 585, 802
CaiI CAGNNNCTG 2 cut(s) 263, 668
Cfr10I RCCGGY 1 cut(s) 711
Cfr13I GGNCC 4 cut(s) 232, 260, 302, 968
CsiI ACCWGGT 2 cut(s) 115, 262
Csp6I GTAC 3 cut(s) 157, 284, 523
CviAII CATG 8 cut(s) 10, 369, 470, 580, 628, 797, 801, 857
CviJI RGCY 7 cut(s) 190, 339, 381, 715, 969, 1000, 1050
CviKI_1 RGCY 7 cut(s) 190, 339, 381, 715, 969, 1000, 1050
CviQI GTAC 3 cut(s) 157, 284, 523
DdeI CTNAG 1 cut(s) 213
DpnI GATC 4 cut(s) 251, 732, 813, 955
DpnII GATC 4 cut(s) 249, 730, 811, 953
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco105I TACGTA 1 cut(s) 522
Eco32I GATATC 1 cut(s) 923
Eco47I GGWCC 3 cut(s) 232, 260, 302
Eco57I CTGAAG 1 cut(s) 1056
EcoO109I RGGNCCY 2 cut(s) 232, 260
EcoRII CCWGG 2 cut(s) 115, 262
EcoRV GATATC 1 cut(s) 923
EcoT22I ATGCAT 2 cut(s) 802, 806
FaeI CATG 8 cut(s) 13, 372, 473, 583, 631, 800, 804, 860
FatI CATG 8 cut(s) 9, 368, 469, 579, 627, 796, 800, 856
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 939
GluI GCNGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 1 cut(s) 969
HapII CCGG 2 cut(s) 712, 916
Hin1II CATG 8 cut(s) 13, 372, 473, 583, 631, 800, 804, 860
HinfI GANTC 3 cut(s) 209, 220, 554
HpaII CCGG 2 cut(s) 712, 916
HphI GGTGA 5 cut(s) 182, 335, 563, 701, 1036
Hpy166II GTNNAC 3 cut(s) 305, 887, 947
Hpy188I TCNGA 5 cut(s) 216, 279, 641, 730, 1068
Hpy188III TCNNGA 4 cut(s) 353, 564, 815, 957
Hpy8I GTNNAC 3 cut(s) 305, 887, 947
HpyCH4III ACNGT 2 cut(s) 781, 1013
HpyCH4IV ACGT 3 cut(s) 159, 396, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 806, 827
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 3 cut(s) 159, 396, 521
Hsp92II CATG 8 cut(s) 13, 372, 473, 583, 631, 800, 804, 860
Kzo9I GATC 4 cut(s) 249, 730, 811, 953
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 4 cut(s) 391, 499, 808, 817
MabI ACCWGGT 2 cut(s) 115, 262
MaeI CTAG 1 cut(s) 939
MaeII ACGT 3 cut(s) 159, 396, 521
MaeIII GTNAC 9 cut(s) 88, 119, 170, 551, 664, 744, 775, 839, 1042
MalI GATC 4 cut(s) 251, 732, 813, 955
MboI GATC 4 cut(s) 249, 730, 811, 953
MboII GAAGA 3 cut(s) 191, 280, 1049
MflI RGATCY 2 cut(s) 249, 811
MhlI GDGCHC 1 cut(s) 992
MluCI AATT 5 cut(s) 102, 488, 634, 696, 784
MlyI GAGTC 3 cut(s) 214, 218, 548
MnlI CCTC 7 cut(s) 9, 143, 210, 246, 392, 398, 635
Mph1103I ATGCAT 2 cut(s) 802, 806
MseI TTAA 1 cut(s) 750
MslI CAYNNNNRTG 1 cut(s) 979
MspI CCGG 2 cut(s) 712, 916
MspR9I CCNGG 3 cut(s) 117, 264, 916
Mva1269I GAATGC 1 cut(s) 573
MvaI CCWGG 2 cut(s) 117, 264
MwoI GCNNNNNNNGC 2 cut(s) 806, 827
NciI CCSGG 1 cut(s) 916
NdeII GATC 4 cut(s) 249, 730, 811, 953
NlaIII CATG 8 cut(s) 13, 372, 473, 583, 631, 800, 804, 860
NlaIV GGNNCC 5 cut(s) 234, 251, 338, 659, 867
NmuCI GTSAC 6 cut(s) 88, 170, 551, 744, 839, 1042
NsiI ATGCAT 2 cut(s) 802, 806
NspI RCATGY 3 cut(s) 473, 804, 860
NspV TTCGAA 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 979
PaeI GCATGC 1 cut(s) 804
PciI ACATGT 2 cut(s) 469, 856
PctI GAATGC 1 cut(s) 573
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 3 cut(s) 214, 217, 548
PpsI GAGTC 3 cut(s) 214, 217, 548
Ppu21I YACGTR 2 cut(s) 397, 522
PpuMI RGGWCCY 2 cut(s) 232, 260
PscI ACATGT 2 cut(s) 469, 856
Psp5II RGGWCCY 2 cut(s) 232, 260
Psp6I CCWGG 2 cut(s) 115, 262
PspGI CCWGG 2 cut(s) 115, 262
PspN4I GGNNCC 5 cut(s) 234, 251, 338, 659, 867
PspPI GGNCC 4 cut(s) 232, 260, 302, 968
PspPPI RGGWCCY 2 cut(s) 232, 260
PstI CTGCAG 1 cut(s) 498
PstNI CAGNNNCTG 2 cut(s) 263, 668
PsuI RGATCY 2 cut(s) 249, 811
RsaI GTAC 3 cut(s) 158, 285, 524
RsaNI GTAC 3 cut(s) 157, 284, 523
RseI CAYNNNNRTG 1 cut(s) 979
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 4 cut(s) 249, 730, 811, 953
Sau96I GGNCC 4 cut(s) 232, 260, 302, 968
SchI GAGTC 3 cut(s) 214, 218, 548
ScrFI CCNGG 3 cut(s) 117, 264, 916
SduI GDGCHC 1 cut(s) 992
SexAI ACCWGGT 2 cut(s) 115, 262
SfaNI GCATC 4 cut(s) 391, 499, 808, 817
SfcI CTRYAG 1 cut(s) 494
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 3 cut(s) 232, 260, 302
SmiMI CAYNNNNRTG 1 cut(s) 979
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
SnaBI TACGTA 1 cut(s) 522
SphI GCATGC 1 cut(s) 804
Sse9I AATT 5 cut(s) 102, 488, 634, 696, 784
SsiI CCGC 2 cut(s) 255, 942
SspMI CTAG 1 cut(s) 939
StyD4I CCNGG 3 cut(s) 115, 262, 914
TaaI ACNGT 2 cut(s) 781, 1013
TaiI ACGT 3 cut(s) 162, 399, 524
TaqI TCGA 4 cut(s) 147, 207, 315, 1052
TasI AATT 5 cut(s) 102, 488, 634, 696, 784
TatI WGTACW 1 cut(s) 283
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TscAI CASTG 2 cut(s) 1016, 1039
TseFI GTSAC 6 cut(s) 88, 170, 551, 744, 839, 1042
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 6 cut(s) 88, 170, 551, 744, 839, 1042
TspDTI ATGAA 4 cut(s) 192, 501, 624, 647
TspRI CASTG 2 cut(s) 1016, 1039
VpaK11BI GGWCC 3 cut(s) 232, 260, 302
XapI RAATTY 4 cut(s) 488, 634, 696, 784
XceI RCATGY 3 cut(s) 473, 804, 860
XspI CTAG 1 cut(s) 939
Zsp2I ATGCAT 2 cut(s) 802, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.