Rmu_sc0004094.1_g000030

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004094.1
OG0000839
Physical Location & Seq
Reverse (-)
126486 .. 131979
5494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004094.1_g000030.1.cds

Sequence Viewer

Length: 1038 bp
atggttgatccacgtgtgaagcaggacacaaaaaggttttggcaacactgtaataccacattggattacactgtagatgtcaccagcgtaatcatttatcatcaacgtctttcagaaatggcggatccatgtgttctgatatacagtgcttcagcttctaactggaccgccatcaaaactctgccaggttattctggtgatcttcctttcgctttagaatctggatatattggtgtaggagacgatgaagaagtgcagctgttttactattttatcgagtctcagaggaaccctgcacaagatcctctgctgtattggatcactggaggccctggttgctctagtcttgctggatttttctttgagagcggtccattggttttcaactacaaagattacaatggaagcctaccaacacttcaggacaatccttatgcatggacacagggactcaacatcatatacttggatgcaccagttggtgccggatactcctactcagaaacccaaagtggttatgttatggatgactataaatttgtggctcaaatttatgaatttctgcaaaagctcaccaatgacataaatttggtacacatcttggaaccatattgtagtaatgcattgcctacagcaaaggagatgtgtcaagctcgtagatacctcaaagacttgtccaaaggtttactaagttcaccacctaacggtccggcactttggtgtcgaagttataatcacatgctcgcctcagtttgggcaaacaacaaaggtgtccaagatgctcttggtgtccgaaggggcaccaaacagttttggcagtactgtaataccacattggcttacactaaagttgccacaagtgtagtgagttatcatcaaattctctcaaagagggctgaccttcgtgctctgatatacagtggtgaccatgacatgtcaattcctcatattggtacacaagaatggataaagactctgaatttgactgtggacgagtcctggaggacatggtcaattgatggccaaactgcagggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

345

Amino Acids

38.94

Weight (kDa)

5.36

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
AccB1I GGYRCC 2 cut(s) 482, 800
AccBSI CCGCTC 1 cut(s) 369
AciI CCGC 3 cut(s) 122, 168, 369
AclWI GGATC 5 cut(s) 2, 119, 132, 296, 326
AcoI YGGCCR 1 cut(s) 1021
AcsI RAATTY 6 cut(s) 536, 549, 557, 586, 879, 979
AcuI CTGAAG 2 cut(s) 135, 404
AcvI CACGTG 1 cut(s) 14
AfaI GTAC 3 cut(s) 594, 821, 955
AfiI CCNNNNNNNGG 3 cut(s) 704, 753, 950
AflIII ACRYGT 2 cut(s) 13, 933
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 3 cut(s) 184, 331, 998
AleI CACNNNNGTG 1 cut(s) 718
AluBI AGCT 4 cut(s) 155, 259, 571, 653
AluI AGCT 4 cut(s) 155, 259, 571, 653
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 2 cut(s) 234, 285
AlwI GGATC 5 cut(s) 2, 119, 132, 296, 326
AoxI GGCC 2 cut(s) 328, 1021
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 6 cut(s) 536, 549, 557, 586, 879, 979
ArsI GACNNNNNNTTYG 4 cut(s) 521, 553, 964, 996
AspS9I GGNCC 4 cut(s) 165, 329, 371, 707
AsuHPI GGTGA 5 cut(s) 73, 209, 565, 687, 935
AvaII GGWCC 3 cut(s) 165, 371, 707
BaeGI GKGCMC 1 cut(s) 803
BalI TGGCCA 1 cut(s) 1023
BamHI GGATCC 1 cut(s) 124
BanI GGYRCC 2 cut(s) 482, 800
BbrPI CACGTG 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 179, 1013
BciT130I CCWGG 3 cut(s) 186, 333, 1000
BciVI GTATCC 1 cut(s) 482
BcoDI GTCTC 2 cut(s) 234, 285
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 3 cut(s) 72, 630, 1029
BfuI GTATCC 1 cut(s) 482
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmcAI AGTACT 1 cut(s) 821
Bme1390I CCNGG 3 cut(s) 186, 333, 1000
Bme18I GGWCC 3 cut(s) 165, 371, 707
BmgT120I GGNCC 4 cut(s) 165, 329, 371, 707
BmiI GGNNCC 5 cut(s) 126, 290, 484, 606, 802
BmrFI CCNGG 3 cut(s) 186, 333, 1000
BmsI GCATC 2 cut(s) 460, 769
BpmI CTGGAG 2 cut(s) 345, 1021
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 3 cut(s) 704, 753, 950
Bse1I ACTGG 3 cut(s) 167, 328, 476
Bse3DI GCAATG 1 cut(s) 623
BseBI CCWGG 3 cut(s) 186, 333, 1000
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 2 cut(s) 475, 532
BseLI CCNNNNNNNGG 3 cut(s) 704, 753, 950
BseMI GCAATG 1 cut(s) 623
BseMII CTCAG 3 cut(s) 296, 513, 762
BseNI ACTGG 3 cut(s) 167, 328, 476
BseSI GKGCMC 1 cut(s) 803
BseXI GCAGC 1 cut(s) 268
BsgI GTGCAG 2 cut(s) 275, 279
BshFI GGCC 2 cut(s) 330, 1023
BshNI GGYRCC 2 cut(s) 482, 800
BsiHKAI GWGCWC 1 cut(s) 910
BsiSI CCGG 2 cut(s) 486, 710
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 3 cut(s) 704, 753, 950
BsmAI GTCTC 2 cut(s) 234, 285
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 2 cut(s) 330, 1023
Bsp1286I GDGCHC 2 cut(s) 803, 910
Bsp143I GATC 5 cut(s) 7, 124, 199, 301, 318
BspACI CCGC 3 cut(s) 122, 168, 369
BspANI GGCC 2 cut(s) 330, 1023
BspCNI CTCAG 3 cut(s) 295, 512, 761
BspLI GGNNCC 5 cut(s) 126, 290, 484, 606, 802
BspMAI CTGCAG 1 cut(s) 1033
BspPI GGATC 5 cut(s) 2, 119, 132, 296, 326
BspT107I GGYRCC 2 cut(s) 482, 800
BsrBI CCGCTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 623
BsrI ACTGG 3 cut(s) 167, 328, 476
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 5 cut(s) 7, 124, 199, 301, 318
Bst2UI CCWGG 3 cut(s) 186, 333, 1000
Bst4CI ACNGT 8 cut(s) 50, 73, 146, 707, 810, 824, 920, 988
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 4 cut(s) 282, 499, 689, 748
BstEII GGTNACC 1 cut(s) 923
BstF5I GGATG 2 cut(s) 475, 532
BstKTI GATC 5 cut(s) 10, 127, 202, 304, 321
BstMAI GTCTC 2 cut(s) 234, 285
BstMBI GATC 5 cut(s) 7, 124, 199, 301, 318
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 3 cut(s) 186, 333, 1000
BstNSI RCATGY 2 cut(s) 742, 937
BstPI GGTNACC 1 cut(s) 923
BstSCI CCNGG 3 cut(s) 184, 331, 998
BstSFI CTRYAG 3 cut(s) 72, 630, 1029
BstSLI GKGCMC 1 cut(s) 803
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 2 cut(s) 124, 301
BstYI RGATCY 2 cut(s) 124, 301
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 2 cut(s) 330, 1023
BtsCI GGATG 2 cut(s) 475, 532
BtsIMutI CAGTG 5 cut(s) 46, 69, 151, 321, 925
Cac8I GCNNGC 1 cut(s) 744
Cfr13I GGNCC 4 cut(s) 165, 329, 371, 707
CpoI CGGWCCG 1 cut(s) 707
Csp6I GTAC 3 cut(s) 593, 820, 954
CspI CGGWCCG 1 cut(s) 707
CviAII CATG 6 cut(s) 129, 438, 739, 929, 934, 1008
CviQI GTAC 3 cut(s) 593, 820, 954
DdeI CTNAG 4 cut(s) 282, 499, 689, 748
DpnI GATC 5 cut(s) 9, 126, 201, 303, 320
DpnII GATC 5 cut(s) 7, 124, 199, 301, 318
EaeI YGGCCR 1 cut(s) 1021
EciI GGCGGA 1 cut(s) 137
Eco47I GGWCC 3 cut(s) 165, 371, 707
Eco57I CTGAAG 2 cut(s) 135, 404
Eco72I CACGTG 1 cut(s) 14
Eco91I GGTNACC 1 cut(s) 923
EcoO109I RGGNCCY 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 923
EcoRII CCWGG 3 cut(s) 184, 331, 998
EcoT22I ATGCAT 2 cut(s) 439, 625
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 6 cut(s) 132, 441, 742, 932, 937, 1011
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FaqI GGGAC 1 cut(s) 462
FatI CATG 6 cut(s) 128, 437, 738, 928, 933, 1007
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 2 cut(s) 482, 539
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 257
GsuI CTGGAG 2 cut(s) 345, 1021
HaeIII GGCC 2 cut(s) 330, 1023
HapII CCGG 2 cut(s) 486, 710
Hin1II CATG 6 cut(s) 132, 441, 742, 932, 937, 1011
HinfI GANTC 5 cut(s) 218, 278, 450, 973, 995
HpaII CCGG 2 cut(s) 486, 710
HphI GGTGA 5 cut(s) 73, 209, 565, 687, 935
Hpy166II GTNNAC 5 cut(s) 595, 686, 695, 956, 991
Hpy188I TCNGA 7 cut(s) 115, 138, 285, 502, 794, 912, 978
Hpy188III TCNNGA 2 cut(s) 222, 422
Hpy8I GTNNAC 5 cut(s) 595, 686, 695, 956, 991
HpyAV CCTTC 2 cut(s) 789, 911
HpyCH4III ACNGT 8 cut(s) 50, 73, 146, 707, 810, 824, 920, 988
HpyCH4IV ACGT 2 cut(s) 13, 106
HpyCH4V TGCA 7 cut(s) 256, 296, 437, 473, 565, 623, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 4 cut(s) 282, 499, 689, 748
HpySE526I ACGT 2 cut(s) 13, 106
Hsp92II CATG 6 cut(s) 132, 441, 742, 932, 937, 1011
Kzo9I GATC 5 cut(s) 7, 124, 199, 301, 318
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 460, 769
MaeI CTAG 1 cut(s) 342
MaeII ACGT 2 cut(s) 13, 106
MaeIII GTNAC 2 cut(s) 79, 923
MalI GATC 5 cut(s) 9, 126, 201, 303, 320
MbiI CCGCTC 1 cut(s) 369
MboI GATC 5 cut(s) 7, 124, 199, 301, 318
MboII GAAGA 2 cut(s) 194, 260
MfeI CAATTG 1 cut(s) 1014
MflI RGATCY 2 cut(s) 124, 301
MhlI GDGCHC 2 cut(s) 803, 910
MlsI TGGCCA 1 cut(s) 1023
MluCI AATT 8 cut(s) 536, 549, 557, 586, 879, 939, 979, 1014
MluNI TGGCCA 1 cut(s) 1023
MlyI GAGTC 4 cut(s) 287, 444, 967, 1004
MnlI CCTC 8 cut(s) 279, 315, 320, 674, 757, 885, 954, 996
Mox20I TGGCCA 1 cut(s) 1023
Mph1103I ATGCAT 2 cut(s) 439, 625
MscI TGGCCA 1 cut(s) 1023
MslI CAYNNNNRTG 2 cut(s) 718, 961
Msp20I TGGCCA 1 cut(s) 1023
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 2 cut(s) 486, 710
MspR9I CCNGG 3 cut(s) 186, 333, 1000
MunI CAATTG 1 cut(s) 1014
MvaI CCWGG 3 cut(s) 186, 333, 1000
MwoI GCNNNNNNNGC 1 cut(s) 336
NdeII GATC 5 cut(s) 7, 124, 199, 301, 318
NlaIII CATG 6 cut(s) 132, 441, 742, 932, 937, 1011
NlaIV GGNNCC 5 cut(s) 126, 290, 484, 606, 802
NmuCI GTSAC 2 cut(s) 79, 923
NsiI ATGCAT 2 cut(s) 439, 625
NspI RCATGY 2 cut(s) 742, 937
OliI CACNNNNGTG 1 cut(s) 718
PciI ACATGT 1 cut(s) 933
PfeI GAWTC 1 cut(s) 218
PflFI GACNNNGTC 1 cut(s) 1009
PfoI TCCNGGA 1 cut(s) 998
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 4 cut(s) 286, 444, 967, 1003
PmaCI CACGTG 1 cut(s) 14
PmlI CACGTG 1 cut(s) 14
PpsI GAGTC 4 cut(s) 286, 444, 967, 1003
Ppu21I YACGTR 1 cut(s) 14
PscI ACATGT 1 cut(s) 933
PsiI TTATAA 1 cut(s) 732
Psp6I CCWGG 3 cut(s) 184, 331, 998
PspCI CACGTG 1 cut(s) 14
PspEI GGTNACC 1 cut(s) 923
PspGI CCWGG 3 cut(s) 184, 331, 998
PspN4I GGNNCC 5 cut(s) 126, 290, 484, 606, 802
PspPI GGNCC 4 cut(s) 165, 329, 371, 707
PstI CTGCAG 1 cut(s) 1033
PsuI RGATCY 2 cut(s) 124, 301
PsyI GACNNNGTC 1 cut(s) 1009
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 3 cut(s) 594, 821, 955
RsaNI GTAC 3 cut(s) 593, 820, 954
RseI CAYNNNNRTG 2 cut(s) 718, 961
Rsr2I CGGWCCG 1 cut(s) 707
RsrII CGGWCCG 1 cut(s) 707
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 5 cut(s) 7, 124, 199, 301, 318
Sau96I GGNCC 4 cut(s) 165, 329, 371, 707
ScaI AGTACT 1 cut(s) 821
SchI GAGTC 4 cut(s) 287, 444, 967, 1004
ScrFI CCNGG 3 cut(s) 186, 333, 1000
SduI GDGCHC 2 cut(s) 803, 910
SfaNI GCATC 2 cut(s) 460, 769
SfcI CTRYAG 3 cut(s) 72, 630, 1029
SinI GGWCC 3 cut(s) 165, 371, 707
SmiMI CAYNNNNRTG 2 cut(s) 718, 961
Sse9I AATT 8 cut(s) 536, 549, 557, 586, 879, 939, 979, 1014
SsiI CCGC 3 cut(s) 122, 168, 369
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 184, 331, 998
TaaI ACNGT 8 cut(s) 50, 73, 146, 707, 810, 824, 920, 988
TaiI ACGT 2 cut(s) 16, 109
TaqI TCGA 2 cut(s) 276, 724
TasI AATT 8 cut(s) 536, 549, 557, 586, 879, 939, 979, 1014
TatI WGTACW 1 cut(s) 819
TfiI GAWTC 1 cut(s) 218
TscAI CASTG 5 cut(s) 53, 76, 151, 328, 925
TseFI GTSAC 2 cut(s) 79, 923
TseI GCWGC 1 cut(s) 256
Tsp45I GTSAC 2 cut(s) 79, 923
TspDTI ATGAA 2 cut(s) 261, 570
TspRI CASTG 5 cut(s) 53, 76, 151, 328, 925
Tth111I GACNNNGTC 1 cut(s) 1009
VpaK11BI GGWCC 3 cut(s) 165, 371, 707
XapI RAATTY 6 cut(s) 536, 549, 557, 586, 879, 979
XceI RCATGY 2 cut(s) 742, 937
XcmI CCANNNNNNNNNTGG 1 cut(s) 782
XspI CTAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 821
Zsp2I ATGCAT 2 cut(s) 439, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.