Rorug04G0007300

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000839
Physical Location & Seq
Reverse (-)
1302485 .. 1306607
4123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0007300.1

Sequence Viewer

Length: 999 bp
ATGTCTTCTTCGTCTCTCACTCTGTTTCTTCACCCTCATCCTCCTCGTCTGAACCACCTCAAACCCAACCTCTACTCCCTCTCCCCTCTCACCTCATCTCTCTCCTTCAAACCCCACATTTGCTTCTCTTCAAACTCCAACTCCCACCACGACGCCAGTACCTCCGAAGAGTCCCGCTGGCTCCGCGAAGAGCACCGCTGGCTGCGAGAGGAACAGCGCTGGCTCCGCGAAGAGCAACGCTGGGCGCGTGACCGCGACTCTCTCCTCGGCGAAATCGCCGACCTTAAGCTCAAAATCCAGGCCCTGGAGCTCCAGAACCCTCTCCAGGCAGGCGCTTCGTCGGAGACTATTGCCATCATCGCCGGGTTGCTGCAGTCGTTGAAGGAGAAGAACCAGATTGCCGAGACGGGGTCGAGTTCCAGAGCGCTGGAGTTGGAAGATCATAATCAGGTGAAGGAGGTGTTCGCTGTTTCGGAAGTGAAGAAGACAAAGGAGGTTCTGAGAAAGGGTTCCGAAGGAGAACATGTTCGAGCAATGCAGGAAGCATTGCTAAAATCGGGATTTTACTCGGGTGAAGAAGACATGGAATTTTCCAACTTTTCAAGCGGGACAGAACGAGCTGTCAAGACTTGGCAAGCCTCCATAGGTTTGCCTGAAGATGGAATAATGACCGAAGAACTTCTTGAAAGATTATTTGACCCACAAACTGAGGGTGCTGTTGAAACAAAGGAAGATGCAAATGGAGCTGCAGGAGAAAACCGCTGGGAAGAACCTTCAAGACTGAACAAGAAAAAAGGGAGTGAAACCAATACAACAGGTACCACAACAACATGCCTTACTTGCCGTGGGGAAGGTCGCTTATTGTGCACAGAATGTGATGGAACTGGTGAACCTAACATCGAGGAACAGCAGTTCTTGGAATGGATCGATGAAGGAGCAAAGTGTCCATACTGTGAAGGTCTTGGGTTTACAGCTTGCGATGTATGTGGAGGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

332

Amino Acids

37.09

Weight (kDa)

5.05

Isoelectric Point (pI)

59.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 173 - 231 4e-12 Putative peptidoglycan binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 818
AccB1I GGYRCC 1 cut(s) 818
AccB7I CCANNNNNTGG 1 cut(s) 304
AccII CGCG 4 cut(s) 186, 228, 247, 255
AciI CCGC 7 cut(s) 175, 184, 196, 226, 253, 606, 760
AclWI GGATC 1 cut(s) 932
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 1 cut(s) 675
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 160, 820
AfeI AGCGCT 2 cut(s) 218, 426
AfiI CCNNNNNNNGG 4 cut(s) 304, 325, 408, 659
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 7 cut(s) 109, 132, 382, 603, 686, 722, 777
AjnI CCWGG 3 cut(s) 297, 303, 324
AloI GAACNNNNNNTCC 4 cut(s) 510, 542, 896, 928
AluBI AGCT 5 cut(s) 289, 310, 620, 746, 974
AluI AGCT 5 cut(s) 289, 310, 620, 746, 974
Alw21I GWGCWC 3 cut(s) 195, 312, 869
Alw26I GTCTC 3 cut(s) 18, 338, 398
Alw44I GTGCAC 1 cut(s) 865
AlwI GGATC 1 cut(s) 932
AlwNI CAGNNNCTG 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 568
Aor51HI AGCGCT 2 cut(s) 218, 426
AoxI GGCC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 865
ApeKI GCWGC 3 cut(s) 202, 370, 746
ApoI RAATTY 1 cut(s) 587
Asp700I GAANNNNTTC 3 cut(s) 508, 525, 678
Asp718I GGTACC 1 cut(s) 818
AspLEI GCGC 4 cut(s) 219, 247, 335, 427
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 5 cut(s) 23, 82, 463, 584, 899
AvaI CYCGRG 1 cut(s) 568
BaeGI GKGCMC 1 cut(s) 869
BaeI ACNNNNGTAYC 2 cut(s) 142, 175
BanI GGYRCC 1 cut(s) 818
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 2 cut(s) 491, 585
Bbv12I GWGCWC 3 cut(s) 195, 312, 869
BbvI GCAGC 3 cut(s) 189, 357, 733
BccI CCATC 3 cut(s) 362, 653, 872
BceAI ACGGC 1 cut(s) 828
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 3 cut(s) 299, 305, 326
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 3 cut(s) 18, 338, 398
BfmI CTRYAG 2 cut(s) 371, 747
BfoI RGCGCY 3 cut(s) 220, 336, 428
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 3 cut(s) 203, 371, 747
BlsI GCNGC 3 cut(s) 204, 372, 748
Bme1390I CCNGG 4 cut(s) 299, 305, 326, 364
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 4 cut(s) 182, 224, 511, 820
BmrFI CCNGG 4 cut(s) 299, 305, 326, 364
BmsI GCATC 1 cut(s) 724
BpiI GAAGAC 2 cut(s) 491, 585
BpmI CTGGAG 4 cut(s) 296, 308, 326, 449
BpuMI CCSGG 1 cut(s) 364
Bsa29I ATCGAT 1 cut(s) 927
BsaBI GATNNNNATC 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 265, 303, 844
BsaXI ACNNNNNCTCC 8 cut(s) 59, 65, 89, 95, 125, 155, 510, 540
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 325, 408, 659
Bse1I ACTGG 2 cut(s) 156, 889
Bse3DI GCAATG 2 cut(s) 540, 545
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 3 cut(s) 299, 305, 326
BseCI ATCGAT 1 cut(s) 927
BseDI CCNNGG 3 cut(s) 265, 303, 844
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 4 cut(s) 304, 325, 408, 659
BseMI GCAATG 2 cut(s) 540, 545
BseMII CTCAG 2 cut(s) 491, 699
BseNI ACTGG 2 cut(s) 156, 889
BseRI GAGGAG 2 cut(s) 33, 254
BseSI GKGCMC 1 cut(s) 869
BseXI GCAGC 3 cut(s) 189, 357, 733
BseYI CCCAGC 2 cut(s) 240, 762
Bsh1236I CGCG 4 cut(s) 186, 228, 247, 255
BshFI GGCC 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 818
BshVI ATCGAT 1 cut(s) 927
BsiHKAI GWGCWC 3 cut(s) 195, 312, 869
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 1 cut(s) 363
BslFI GGGAC 2 cut(s) 157, 622
BslI CCNNNNNNNGG 4 cut(s) 304, 325, 408, 659
BsmAI GTCTC 3 cut(s) 18, 338, 398
BsmBI CGTCTC 2 cut(s) 18, 398
BsmFI GGGAC 2 cut(s) 157, 622
BsnI GGCC 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 568
Bsp1286I GDGCHC 3 cut(s) 195, 312, 869
Bsp143I GATC 2 cut(s) 439, 924
BspACI CCGC 7 cut(s) 175, 184, 196, 226, 253, 606, 760
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 2 cut(s) 492, 700
BspDI ATCGAT 1 cut(s) 927
BspFNI CGCG 4 cut(s) 186, 228, 247, 255
BspLI GGNNCC 4 cut(s) 182, 224, 511, 820
BspMAI CTGCAG 2 cut(s) 375, 751
BspPI GGATC 1 cut(s) 932
BspQI GCTCTTC 2 cut(s) 183, 225
BspT107I GGYRCC 1 cut(s) 818
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 2 cut(s) 540, 545
BsrI ACTGG 2 cut(s) 156, 889
BssECI CCNNGG 3 cut(s) 265, 303, 844
BssMI GATC 2 cut(s) 439, 924
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 3 cut(s) 299, 305, 326
Bst4CI ACNGT 1 cut(s) 953
Bst6I CTCTTC 4 cut(s) 133, 162, 183, 225
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 6 cut(s) 179, 200, 221, 331, 636, 976
BstDEI CTNAG 2 cut(s) 500, 708
BstDSI CCRYGG 1 cut(s) 844
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 4 cut(s) 186, 228, 247, 255
BstH2I RGCGCY 3 cut(s) 220, 336, 428
BstHHI GCGC 4 cut(s) 219, 247, 335, 427
BstKTI GATC 2 cut(s) 442, 927
BstMAI GTCTC 3 cut(s) 18, 338, 398
BstMBI GATC 2 cut(s) 439, 924
BstMWI GCNNNNNNNGC 7 cut(s) 183, 199, 225, 359, 743, 840, 864
BstNI CCWGG 3 cut(s) 299, 305, 326
BstNSI RCATGY 2 cut(s) 527, 834
BstSCI CCNGG 4 cut(s) 297, 303, 324, 362
BstSFI CTRYAG 2 cut(s) 371, 747
BstSLI GKGCMC 1 cut(s) 869
BstUI CGCG 4 cut(s) 186, 228, 247, 255
BstV1I GCAGC 3 cut(s) 189, 357, 733
BstV2I GAAGAC 2 cut(s) 491, 585
BstXI CCANNNNNNTGG 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 927
BsuRI GGCC 1 cut(s) 302
BsuTUI ATCGAT 1 cut(s) 927
BtgI CCRYGG 1 cut(s) 844
BtgZI GCGATG 2 cut(s) 343, 993
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 6 cut(s) 179, 200, 221, 331, 636, 976
CaiI CAGNNNCTG 1 cut(s) 304
CfoI GCGC 4 cut(s) 219, 247, 335, 427
Cfr13I GGNCC 1 cut(s) 301
ClaI ATCGAT 1 cut(s) 927
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 159, 819
CviAII CATG 3 cut(s) 524, 583, 831
CviQI GTAC 2 cut(s) 159, 819
DdeI CTNAG 2 cut(s) 500, 708
DpnI GATC 2 cut(s) 441, 926
DpnII GATC 2 cut(s) 439, 924
Eam1104I CTCTTC 4 cut(s) 133, 162, 183, 225
EarI CTCTTC 4 cut(s) 133, 162, 183, 225
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 312
Eco47III AGCGCT 2 cut(s) 218, 426
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 568
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 3 cut(s) 297, 303, 324
EcoT38I GRGCYC 1 cut(s) 312
Esp3I CGTCTC 2 cut(s) 18, 398
FaeI CATG 3 cut(s) 527, 586, 834
FaiI YATR 7 cut(s) 444, 525, 584, 644, 832, 949, 985
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FaqI GGGAC 2 cut(s) 157, 622
FatI CATG 3 cut(s) 523, 582, 830
FauI CCCGC 2 cut(s) 182, 599
Fnu4HI GCNGC 3 cut(s) 203, 371, 747
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 3 cut(s) 203, 371, 747
GlaI GCGC 4 cut(s) 218, 246, 334, 426
GluI GCNGC 3 cut(s) 203, 371, 747
GsaI CCCAGC 2 cut(s) 244, 766
GsuI CTGGAG 4 cut(s) 296, 308, 326, 449
HaeII RGCGCY 3 cut(s) 220, 336, 428
HaeIII GGCC 1 cut(s) 302
HapII CCGG 1 cut(s) 363
HgaI GACGC 1 cut(s) 161
HhaI GCGC 4 cut(s) 219, 247, 335, 427
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 527, 586, 834
Hin6I GCGC 4 cut(s) 217, 245, 333, 425
HinP1I GCGC 4 cut(s) 217, 245, 333, 425
HinfI GANTC 2 cut(s) 170, 257
HpaII CCGG 1 cut(s) 363
HphI GGTGA 5 cut(s) 23, 82, 463, 584, 899
Hpy166II GTNNAC 3 cut(s) 867, 890, 969
Hpy188I TCNGA 6 cut(s) 51, 166, 343, 475, 501, 514
Hpy188III TCNNGA 6 cut(s) 313, 420, 558, 625, 683, 777
Hpy8I GTNNAC 3 cut(s) 867, 890, 969
Hpy99I CGWCG 2 cut(s) 155, 343
HpyAV CCTTC 8 cut(s) 115, 376, 448, 509, 783, 845, 926, 950
HpyCH4III ACNGT 1 cut(s) 953
HpyCH4V TGCA 5 cut(s) 373, 538, 737, 749, 867
HpyF10VI GCNNNNNNNGC 7 cut(s) 183, 199, 225, 359, 743, 840, 864
HpyF3I CTNAG 2 cut(s) 500, 708
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 527, 586, 834
HspAI GCGC 4 cut(s) 217, 245, 333, 425
KpnI GGTACC 1 cut(s) 822
Kzo9I GATC 2 cut(s) 439, 924
LguI GCTCTTC 2 cut(s) 183, 225
LmnI GCTCC 6 cut(s) 186, 228, 307, 315, 743, 935
Lsp1109I GCAGC 3 cut(s) 189, 357, 733
LweI GCATC 1 cut(s) 724
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 441, 926
MboI GATC 2 cut(s) 439, 924
MhlI GDGCHC 3 cut(s) 195, 312, 869
MluCI AATT 1 cut(s) 587
MlyI GAGTC 2 cut(s) 179, 251
MmeI TCCRAC 4 cut(s) 162, 321, 414, 618
MroXI GAANNNNTTC 3 cut(s) 508, 525, 678
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 3 cut(s) 177, 198, 762
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 4 cut(s) 299, 305, 326, 364
MvaI CCWGG 3 cut(s) 299, 305, 326
MvnI CGCG 4 cut(s) 186, 228, 247, 255
MwoI GCNNNNNNNGC 7 cut(s) 183, 199, 225, 359, 743, 840, 864
NciI CCSGG 1 cut(s) 364
NdeII GATC 2 cut(s) 439, 924
NlaIII CATG 3 cut(s) 527, 586, 834
NlaIV GGNNCC 4 cut(s) 182, 224, 511, 820
NmeAIII GCCGAG 2 cut(s) 246, 427
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 2 cut(s) 527, 834
PciI ACATGT 1 cut(s) 523
PciSI GCTCTTC 2 cut(s) 183, 225
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PdmI GAANNNNTTC 3 cut(s) 508, 525, 678
PflFI GACNNNGTC 1 cut(s) 409
PflMI CCANNNNNTGG 1 cut(s) 304
PkrI GCNGC 3 cut(s) 204, 372, 748
PleI GAGTC 2 cut(s) 178, 251
PpsI GAGTC 2 cut(s) 178, 251
PscI ACATGT 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 297, 303, 324
PspFI CCCAGC 2 cut(s) 240, 762
PspGI CCWGG 3 cut(s) 297, 303, 324
PspN4I GGNNCC 4 cut(s) 182, 224, 511, 820
PspPI GGNCC 1 cut(s) 301
PstI CTGCAG 2 cut(s) 375, 751
PstNI CAGNNNCTG 1 cut(s) 304
PsyI GACNNNGTC 1 cut(s) 409
RsaI GTAC 2 cut(s) 160, 820
RsaNI GTAC 2 cut(s) 159, 819
SacI GAGCTC 1 cut(s) 312
SapI GCTCTTC 2 cut(s) 183, 225
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 3 cut(s) 203, 371, 747
Sau3AI GATC 2 cut(s) 439, 924
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 2 cut(s) 179, 251
ScrFI CCNGG 4 cut(s) 299, 305, 326, 364
SduI GDGCHC 3 cut(s) 195, 312, 869
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 2 cut(s) 371, 747
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 587
SsiI CCGC 7 cut(s) 175, 184, 196, 226, 253, 606, 760
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 4 cut(s) 297, 303, 324, 362
TaaI ACNGT 1 cut(s) 953
TaqI TCGA 4 cut(s) 413, 529, 900, 927
TaqII GACCGA 1 cut(s) 686
TasI AATT 1 cut(s) 587
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 3 cut(s) 202, 370, 746
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 945
Tth111I GACNNNGTC 1 cut(s) 409
Van91I CCANNNNNTGG 1 cut(s) 304
Vha464I CTTAAG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 865
XapI RAATTY 1 cut(s) 587
XceI RCATGY 2 cut(s) 527, 834
XmnI GAANNNNTTC 3 cut(s) 508, 525, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.