Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000839

Physical Location & Seq

Genomic Coordinates Reverse (-)

51770216 .. 51784393

Gene Structure 14178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTTTTGACCCGGAGATATCTCAAGGAAACATCTAGCGGTTTACAAAGATCACGACCTAACGGCCCTGCACTTTGGTGTCGGAGTTATCGTAGCATGCTCAACACCGTTTGGGCTAACAAAAAAGGTGTTCAAGATGCTCTTGGTGTCCGAAGGGGCACGAAAAGGCTTTGGCAACACTGTAATACCACATTGGACTACACTGAAGATGTCACCAGCGTAATCATTTATCACCAAAATCTTTCAAAAATGGCTGATCTACGTGTTCTGATATACAGTGGTGATCATGACATGCAAGTTCCTCATATTGGTACACAAAGATGGATAAGCACACTGAATTTGACTGAGGATGAATCCTGGAGGACATGGTCAGTTGATGGCCAAACTGCAGGATACACGAAGAAGTTGATCAATGAATATATCACTTTGACATATGCGACTGGAGCAGGCCACCTTGCCGCAGAGTACCAGCCAAAGGAAGTTGCTAGCTTGATTGATAGATGGATGGCTTACTACCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

175

Amino Acids

20.08

Weight (kDa)

9.23

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	29 - 169	6.8e-30	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06480 FvH4_4g06480 FvH4_4g06510 FvH4_4g06510 FvH4_4g06510 FvH4_4g06510 FvH4_4g07930 FvH4_4g07930 FvH4_4g07930 FvH4_4g07930
rosa_chinensis	RchiOBHm_Chr4g0398271 RchiOBHm_Chr4g0398281 RchiOBHm_Chr4g0398291 RchiOBHm_Chr4g0398311 RchiOBHm_Chr4g0401601 RchiOBHm_Chr4g0401701
rosa_laevigata	RLG00000009369 RLG00000009372
rosa_multiflora	Rmu_co8114566.1_g000001 Rmu_sc0002657.1_g000001 Rmu_sc0004094.1_g000009 Rmu_sc0004094.1_g000010 Rmu_sc0004094.1_g000014 Rmu_sc0004094.1_g000030 Rmu_sc0004835.1_g000012 Rmu_sc0004835.1_g000029 Rmu_sc0004835.1_g000031 Rmu_sc0004835.1_g000032
rosa_roxburghii	Rroxscaffold_5G00343260 Rroxscaffold_5G00343270 Rroxscaffold_5G00343280 Rroxscaffold_5G00343300 Rroxscaffold_5G00343310 Rroxscaffold_5G00343320
rosa_rugosa	Rorug04G0007300 Rorug04G0007300 Rorug04G0007400 Rorug04G0007500 Rorug04G0007600 Rorug04G0007600 Rorug04G0007700 Rorug04G0030500
rosa_samantha	Rh1BG213300 Rh4AG085000 Rh4AG085100 Rh4AG085200 Rh4AG085400 Rh4AG108100 Rh4BG082200 Rh4BG082300 Rh4BG082400 Rh4BG082500 Rh4BG102000 Rh4CG092400 Rh4CG092800 Rh4CG116400 Rh4DG077300 Rh4DG077400 Rh4DG077500 Rh4DG099300 Rh6CG489100
rosa_wichuraiana	Rw4G007050 Rw4G007060 Rw4G007070 Rw4G007080 Rw4G007120 Rw4G008780 Rw4G008790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	39, 459
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	313, 467
AfiI	CCNNNNNNNGG	2 cut(s)	308, 475
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	134, 246
AjnI	CCWGG	1 cut(s)	356
AleI	CACNNNNGTG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
AoxI	GGCC	3 cut(s)	64, 379, 448
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	3 cut(s)	205, 224, 293
AsuNHI	GCTAGC	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	381
BccI	CCATC	4 cut(s)	315, 371, 495, 499
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	358
BciVI	GTATCC	1 cut(s)	386
BclI	TGATCA	2 cut(s)	283, 408
BcnI	CCSGG	1 cut(s)	13
BfaI	CTAG	2 cut(s)	36, 486
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	386
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	13, 358
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	13, 358
BmsI	GCATC	1 cut(s)	127
BmtI	GCTAGC	1 cut(s)	489
BpmI	CTGGAG	2 cut(s)	379, 462
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 475
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	355, 510
BseLI	CCNNNNNNNGG	2 cut(s)	308, 475
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	161
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	66, 381, 450
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	308, 475
BsnI	GGCC	3 cut(s)	66, 381, 450
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	50, 256, 283, 408
BspACI	CCGC	2 cut(s)	39, 459
BspANI	GGCC	3 cut(s)	66, 381, 450
BspCNI	CTCAG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	391
BspOI	GCTAGC	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	445
BssMI	GATC	4 cut(s)	50, 256, 283, 408
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	3 cut(s)	109, 182, 278
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	98, 448, 487
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	355, 510
BstKTI	GATC	4 cut(s)	53, 259, 286, 411
BstMBI	GATC	4 cut(s)	50, 256, 283, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	2 cut(s)	100, 295
BstSCI	CCNGG	2 cut(s)	11, 356
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	66, 381, 450
BtsCI	GGATG	2 cut(s)	355, 510
BtsIMutI	CAGTG	4 cut(s)	178, 201, 283, 332
Cac8I	GCNNGC	3 cut(s)	98, 448, 487
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	312, 466
CviAII	CATG	4 cut(s)	97, 287, 292, 366
CviJI	RGCY	9 cut(s)	66, 116, 169, 254, 381, 450, 472, 489, 509
CviKI_1	RGCY	9 cut(s)	66, 116, 169, 254, 381, 450, 472, 489, 509
CviQI	GTAC	2 cut(s)	312, 466
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	4 cut(s)	52, 258, 285, 410
DpnII	GATC	4 cut(s)	50, 256, 283, 408
EaeI	YGGCCR	1 cut(s)	379
Eco32I	GATATC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	356
EcoRV	GATATC	1 cut(s)	20
FaeI	CATG	4 cut(s)	100, 290, 295, 369
FaiI	YATR	9 cut(s)	98, 274, 288, 293, 306, 367, 420, 433, 435
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FatI	CATG	4 cut(s)	96, 286, 291, 365
FauNDI	CATATG	1 cut(s)	433
FbaI	TGATCA	2 cut(s)	283, 408
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	2 cut(s)	362, 517
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	2 cut(s)	36, 486
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	2 cut(s)	379, 462
HaeIII	GGCC	3 cut(s)	66, 381, 450
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	4 cut(s)	100, 290, 295, 369
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	3 cut(s)	205, 224, 293
Hpy166II	GTNNAC	2 cut(s)	44, 314
Hpy188I	TCNGA	3 cut(s)	84, 152, 270
Hpy188III	TCNNGA	3 cut(s)	54, 134, 287
Hpy8I	GTNNAC	2 cut(s)	44, 314
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	3 cut(s)	109, 182, 278
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	71, 295, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	4 cut(s)	100, 290, 295, 369
Ksp22I	TGATCA	2 cut(s)	283, 408
Kzo9I	GATC	4 cut(s)	50, 256, 283, 408
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	9 cut(s)	26, 81, 229, 343, 370, 375, 426, 432, 482
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	36, 486
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	4 cut(s)	52, 258, 285, 410
MboI	GATC	4 cut(s)	50, 256, 283, 408
MboII	GAAGA	2 cut(s)	218, 412
MhlI	GDGCHC	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	1 cut(s)	337
MluNI	TGGCCA	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	3 cut(s)	312, 340, 354
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	1 cut(s)	523
MslI	CAYNNNNRTG	2 cut(s)	76, 319
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	13, 358
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	443
NciI	CCSGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	4 cut(s)	50, 256, 283, 408
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	4 cut(s)	100, 290, 295, 369
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	2 cut(s)	100, 295
OliI	CACNNNNGTG	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	100
PagI	TCATGA	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	353
PflFI	GACNNNGTC	1 cut(s)	367
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	460
Ppu21I	YACGTR	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	391
PsyI	GACNNNGTC	1 cut(s)	367
RsaI	GTAC	2 cut(s)	313, 467
RsaNI	GTAC	2 cut(s)	312, 466
RseI	CAYNNNNRTG	2 cut(s)	76, 319
SaqAI	TTAA	1 cut(s)	523
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	4 cut(s)	50, 256, 283, 408
Sau96I	GGNCC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	13, 358
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	5 cut(s)	61, 130, 265, 456, 491
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	387
SmiMI	CAYNNNNRTG	2 cut(s)	76, 319
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	100
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	39, 459
SspMI	CTAG	2 cut(s)	36, 486
StyD4I	CCNGG	2 cut(s)	11, 356
TaaI	ACNGT	3 cut(s)	109, 182, 278
TaiI	ACGT	1 cut(s)	265
TasI	AATT	1 cut(s)	337
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TscAI	CASTG	4 cut(s)	185, 208, 283, 339
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	366, 429
TspRI	CASTG	4 cut(s)	185, 208, 283, 339
Tth111I	GACNNNGTC	1 cut(s)	367
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	2 cut(s)	100, 295
XspI	CTAG	2 cut(s)	36, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.