Rh4BG082400

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000839
Physical Location & Seq
Forward (+)
14342421 .. 14345229
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG082400.1

Sequence Viewer

Length: 1128 bp
ATGTTGCCCAAAATGAATATGTTCATGGGTTTGCGTCTACTTGTCACATTATTGGGTTTAATCACTTCAACTTCAGCTTCAAACATCACTACGAAAATCGTTACCACTCTACCCGGTTACTCTGGAGATCTTCCTTTCACATTAGAAACCGGATATATCGGCGTAGGTGACAATGAAGAAGTGCAGCTATTTTACGTTTTTGTCGAGTCTGAGAGAAGCCCTGCACAAGATCCACTTGTGTTACGATTTGGTGCAGGTCCGGGTTGCTCTGGTCTCCACGGCTTTTTCTTTGAGAGTGGTCCATTATCCTTCAATTCTGCACATTACAACGGGAGCCTACCAACACTTGAGGACAACCCTTATTCATGGACAAAGGGACTCAACATCATATTCTTGGATGCACCAGTTGGTACTGGATTCTCCTATTCAACAACCCAAGATGGTTACTATGTGGATGAATATAAATATGCGGCACAAGGCTATGAATTCCTCCAGAAGTGGCTGGAGGCACACCCTGCATATGTGGAAAATCTACTCTACATTAGTGGTGAATCCTTCAGTGGCTTAATAGTTCCGATGGTTGTACAAAAGATAGTAGATGGTAATGAAAATGGAAGTGTGCCTCTAATGAATATCAAGGGATATCTGCTTCAGAACCCAGTAACGGATTCAGTTATTGATGGTAATGCAGTAATCCCTTATGCCCACCGGCTGACTCTTGTATCTGATCAACTTTATAAGGCGGCTAAAACAAGTTGCAATGGTGAATACGTGAATGTAAATTCAAGCAATGCCGCATGCATTGCTGATATCGATGCTATTGATCAGCTCATCAAGGATATAAATAAGAACAATATCTTGGAACCAGACTGTACTACTTCATTGCCGAGATCAAAGAAGATAAGCACAGCTCGAAGATATCTCAAAGAGTTGTCCAAAGGTTTACTGAGTTCACCAACCAACGGTCCTGCACTATGGTGTCGGGGCACAAAATTGTTATGGAGACCATGTAATACCACATTGACGGGTTACACTCATGAAGTCACCAGTTCTCTCGGTTATCATCTCAATCTCACAAAAAAGGCTGACCTACGTGCTTTGATATACAGATATGAGAAGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

375

Amino Acids

41.39

Weight (kDa)

5.84

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 370 4.7e-80 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
Acc36I ACCTGC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 37
AciI CCGC 3 cut(s) 470, 743, 795
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 2 cut(s) 485, 781
AcuI CTGAAG 3 cut(s) 57, 541, 635
AfaI GTAC 3 cut(s) 412, 585, 874
AfiI CCNNNNNNNGG 2 cut(s) 664, 962
AgsI TTSAA 5 cut(s) 69, 81, 313, 429, 786
AjuI GAANNNNNNNTTGG 2 cut(s) 842, 874
AleI CACNNNNGTG 1 cut(s) 976
AluBI AGCT 4 cut(s) 77, 187, 829, 911
AluI AGCT 4 cut(s) 77, 187, 829, 911
Alw26I GTCTC 2 cut(s) 278, 997
AlwI GGATC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 2 cut(s) 485, 781
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 3 cut(s) 257, 299, 965
AsuC2I CCSGG 2 cut(s) 114, 261
AsuHPI GGTGA 5 cut(s) 179, 560, 776, 945, 1036
AvaII GGWCC 3 cut(s) 257, 299, 965
BaeGI GKGCMC 1 cut(s) 989
BaeI ACNNNNGTAYC 2 cut(s) 705, 738
BbvI GCAGC 1 cut(s) 196
BccI CCATC 4 cut(s) 434, 571, 593, 674
BceAI ACGGC 1 cut(s) 295
BclI TGATCA 2 cut(s) 727, 823
BcnI CCSGG 2 cut(s) 114, 261
BcoDI GTCTC 2 cut(s) 278, 997
BfuAI ACCTGC 1 cut(s) 245
BglII AGATCT 1 cut(s) 127
BisI GCNGC 4 cut(s) 185, 471, 744, 795
BlsI GCNGC 4 cut(s) 186, 472, 745, 796
Bme1390I CCNGG 2 cut(s) 114, 261
Bme18I GGWCC 3 cut(s) 257, 299, 965
BmgT120I GGNCC 3 cut(s) 257, 299, 965
BmiI GGNNCC 2 cut(s) 335, 864
BmrFI CCNGG 2 cut(s) 114, 261
BmrI ACTGGG 1 cut(s) 653
BmsI GCATC 2 cut(s) 388, 805
BmuI ACTGGG 1 cut(s) 653
BpmI CTGGAG 3 cut(s) 144, 476, 524
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 114, 261
Bsa29I ATCGAT 1 cut(s) 813
BsaAI YACGTR 2 cut(s) 772, 1094
BsaI GGTCTC 2 cut(s) 278, 997
BsaJI CCNNGG 1 cut(s) 277
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 994, 1024
Bsc4I CCNNNNNNNGG 2 cut(s) 664, 962
Bse118I RCCGGY 1 cut(s) 708
Bse1I ACTGG 4 cut(s) 404, 418, 659, 1047
Bse3DI GCAATG 4 cut(s) 766, 796, 801, 881
BseCI ATCGAT 1 cut(s) 813
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 2 cut(s) 403, 460
BseLI CCNNNNNNNGG 2 cut(s) 664, 962
BseMI GCAATG 4 cut(s) 766, 796, 801, 881
BseMII CTCAG 2 cut(s) 201, 938
BseNI ACTGG 4 cut(s) 404, 418, 659, 1047
BseSI GKGCMC 1 cut(s) 989
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 5 cut(s) 203, 207, 273, 303, 954
BshVI ATCGAT 1 cut(s) 813
BsiSI CCGG 4 cut(s) 114, 150, 260, 709
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 2 cut(s) 664, 962
BsmAI GTCTC 2 cut(s) 278, 997
BsmFI GGGAC 1 cut(s) 390
Bso31I GGTCTC 2 cut(s) 278, 997
Bsp1286I GDGCHC 1 cut(s) 989
Bsp1407I TGTACA 1 cut(s) 583
Bsp143I GATC 5 cut(s) 127, 229, 727, 823, 890
BspACI CCGC 3 cut(s) 470, 743, 795
BspCNI CTCAG 2 cut(s) 202, 939
BspDI ATCGAT 1 cut(s) 813
BspHI TCATGA 1 cut(s) 1036
BspLI GGNNCC 2 cut(s) 335, 864
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 1 cut(s) 224
BspTNI GGTCTC 2 cut(s) 278, 997
BsrDI GCAATG 4 cut(s) 766, 796, 801, 881
BsrFI RCCGGY 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 583
BsrI ACTGG 4 cut(s) 404, 418, 659, 1047
BssAI RCCGGY 1 cut(s) 708
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 5 cut(s) 127, 229, 727, 823, 890
Bst4CI ACNGT 2 cut(s) 872, 965
BstAPI GCANNNNNTGC 2 cut(s) 515, 803
BstAUI TGTACA 1 cut(s) 583
BstBAI YACGTR 2 cut(s) 772, 1094
BstC8I GCNNGC 1 cut(s) 799
BstDEI CTNAG 2 cut(s) 210, 947
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 403, 460
BstKTI GATC 5 cut(s) 130, 232, 730, 826, 893
BstMAI GTCTC 2 cut(s) 278, 997
BstMBI GATC 5 cut(s) 127, 229, 727, 823, 890
BstMWI GCNNNNNNNGC 2 cut(s) 515, 803
BstNSI RCATGY 1 cut(s) 801
BstSCI CCNGG 2 cut(s) 112, 259
BstSLI GKGCMC 1 cut(s) 989
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 127, 229
BstYI RGATCY 2 cut(s) 127, 229
Bsu15I ATCGAT 1 cut(s) 813
BsuTUI ATCGAT 1 cut(s) 813
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 2 cut(s) 403, 460
BtsIMutI CAGTG 1 cut(s) 565
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 799
CciI TCATGA 1 cut(s) 1036
Cfr10I RCCGGY 1 cut(s) 708
Cfr13I GGNCC 3 cut(s) 257, 299, 965
ClaI ATCGAT 1 cut(s) 813
CseI GACGC 1 cut(s) 23
Csp6I GTAC 3 cut(s) 411, 584, 873
CviAII CATG 5 cut(s) 25, 366, 798, 1008, 1037
CviQI GTAC 3 cut(s) 411, 584, 873
DdeI CTNAG 2 cut(s) 210, 947
DpnI GATC 5 cut(s) 129, 231, 729, 825, 892
DpnII GATC 5 cut(s) 127, 229, 727, 823, 890
Eco31I GGTCTC 2 cut(s) 278, 997
Eco32I GATATC 3 cut(s) 644, 811, 920
Eco47I GGWCC 3 cut(s) 257, 299, 965
Eco57I CTGAAG 3 cut(s) 57, 541, 635
EcoRI GAATTC 1 cut(s) 485
EcoRV GATATC 3 cut(s) 644, 811, 920
EcoT22I ATGCAT 1 cut(s) 803
FaeI CATG 5 cut(s) 28, 369, 801, 1011, 1040
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 390
FatI CATG 5 cut(s) 24, 365, 797, 1007, 1036
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 2 cut(s) 727, 823
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 4 cut(s) 185, 471, 744, 795
FokI GGATG 2 cut(s) 410, 467
Fsp4HI GCNGC 4 cut(s) 185, 471, 744, 795
GluI GCNGC 4 cut(s) 185, 471, 744, 795
GsuI CTGGAG 3 cut(s) 144, 476, 524
HapII CCGG 4 cut(s) 114, 150, 260, 709
HgaI GACGC 1 cut(s) 23
Hin1II CATG 5 cut(s) 28, 369, 801, 1011, 1040
HinfI GANTC 6 cut(s) 206, 378, 417, 551, 668, 715
HpaII CCGG 4 cut(s) 114, 150, 260, 709
HphI GGTGA 5 cut(s) 179, 560, 776, 945, 1036
Hpy166II GTNNAC 3 cut(s) 38, 944, 953
Hpy188I TCNGA 4 cut(s) 211, 576, 654, 727
Hpy188III TCNNGA 3 cut(s) 123, 493, 1037
Hpy8I GTNNAC 3 cut(s) 38, 944, 953
HpyAV CCTTC 2 cut(s) 319, 565
HpyCH4III ACNGT 2 cut(s) 872, 965
HpyCH4IV ACGT 3 cut(s) 195, 771, 1093
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 803
HpyF3I CTNAG 2 cut(s) 210, 947
HpySE526I ACGT 3 cut(s) 195, 771, 1093
Hsp92II CATG 5 cut(s) 28, 369, 801, 1011, 1040
Ksp22I TGATCA 2 cut(s) 727, 823
Kzo9I GATC 5 cut(s) 127, 229, 727, 823, 890
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 388, 805
MaeII ACGT 3 cut(s) 195, 771, 1093
MaeIII GTNAC 9 cut(s) 43, 100, 116, 167, 240, 443, 661, 1028, 1042
MalI GATC 5 cut(s) 129, 231, 729, 825, 892
MboI GATC 5 cut(s) 127, 229, 727, 823, 890
MboII GAAGA 4 cut(s) 122, 188, 910, 927
MflI RGATCY 2 cut(s) 127, 229
MhlI GDGCHC 1 cut(s) 989
MluCI AATT 4 cut(s) 313, 485, 781, 992
MlyI GAGTC 3 cut(s) 215, 372, 709
MnlI CCTC 4 cut(s) 343, 499, 500, 633
Mph1103I ATGCAT 1 cut(s) 803
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 2 cut(s) 59, 566
MslI CAYNNNNRTG 1 cut(s) 976
MspI CCGG 4 cut(s) 114, 150, 260, 709
MspR9I CCNGG 2 cut(s) 114, 261
MwoI GCNNNNNNNGC 2 cut(s) 515, 803
NciI CCSGG 2 cut(s) 114, 261
NdeI CATATG 1 cut(s) 520
NdeII GATC 5 cut(s) 127, 229, 727, 823, 890
NlaIII CATG 5 cut(s) 28, 369, 801, 1011, 1040
NlaIV GGNNCC 2 cut(s) 335, 864
NmeAIII GCCGAG 1 cut(s) 912
NmuCI GTSAC 3 cut(s) 43, 167, 1042
NsiI ATGCAT 1 cut(s) 803
NspI RCATGY 1 cut(s) 801
OliI CACNNNNGTG 1 cut(s) 976
PaeI GCATGC 1 cut(s) 801
PagI TCATGA 1 cut(s) 1036
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 3 cut(s) 417, 551, 668
PkrI GCNGC 4 cut(s) 186, 472, 745, 796
PleI GAGTC 3 cut(s) 214, 372, 709
PpsI GAGTC 3 cut(s) 214, 372, 709
Ppu21I YACGTR 2 cut(s) 772, 1094
PsiI TTATAA 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 335, 864
PspPI GGNCC 3 cut(s) 257, 299, 965
PsuI RGATCY 2 cut(s) 127, 229
RsaI GTAC 3 cut(s) 412, 585, 874
RsaNI GTAC 3 cut(s) 411, 584, 873
RseI CAYNNNNRTG 1 cut(s) 976
SaqAI TTAA 2 cut(s) 59, 566
SatI GCNGC 4 cut(s) 185, 471, 744, 795
Sau3AI GATC 5 cut(s) 127, 229, 727, 823, 890
Sau96I GGNCC 3 cut(s) 257, 299, 965
SchI GAGTC 3 cut(s) 215, 372, 709
ScrFI CCNGG 2 cut(s) 114, 261
SduI GDGCHC 1 cut(s) 989
SfaNI GCATC 2 cut(s) 388, 805
SinI GGWCC 3 cut(s) 257, 299, 965
SmiMI CAYNNNNRTG 1 cut(s) 976
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 1 cut(s) 801
Sse9I AATT 4 cut(s) 313, 485, 781, 992
SsiI CCGC 3 cut(s) 470, 743, 795
StyD4I CCNGG 2 cut(s) 112, 259
TaaI ACNGT 2 cut(s) 872, 965
TaiI ACGT 3 cut(s) 198, 774, 1096
TaqI TCGA 3 cut(s) 204, 813, 913
TasI AATT 4 cut(s) 313, 485, 781, 992
TatI WGTACW 2 cut(s) 583, 872
TauI GCSGC 3 cut(s) 473, 746, 797
TfiI GAWTC 3 cut(s) 417, 551, 668
Tru1I TTAA 2 cut(s) 59, 566
Tru9I TTAA 2 cut(s) 59, 566
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 3 cut(s) 43, 167, 1042
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 3 cut(s) 43, 167, 1042
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 1 cut(s) 565
VpaK11BI GGWCC 3 cut(s) 257, 299, 965
XapI RAATTY 2 cut(s) 485, 781
XceI RCATGY 1 cut(s) 801
XmiI GTMKAC 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.