Rmu_sc0004094.1_g000014

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004094.1
OG0000839
Physical Location & Seq
Forward (+)
77611 .. 81237
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004094.1_g000014.1.cds

Sequence Viewer

Length: 1422 bp
atgaatatgttcatgggcttgcgtctacttgtgacattattgggtgtaatcacttcaacttcagcttcaaacatcactacgaaaatcgttaccactctacccggttactctggagatcttcctttcacattagaaactggatatatcggcgtaggtgacaatgaagaagtgcagctattttacgtttttgtcgagtctgagagaagccctggacaagatccacttgtgttacgatttggtgcaggtccgggttgctctggtctccacggctttttctttgagagtggtccattatccttcaattctgcacattacaacgggagcctaccaacacttgaggacaacccttattcatggacaaagggactcaacatcatattcttggatgcaccagttggtactggattctcctattcaacaacccaagatggttactatgtggatgactataaatatgcggcacaaggctatgaattcctccagaagtggctggaggcacaccctgcatatgtggaaaatctactctacattagtggtgaatccttcagtggcttaatagttccgatggttgtacaaaagatagtagatggtaacgaaaatggaagtgtgcctctaatgaatatcaagggatatctgcttcagaacccagtaacggattcagttattgatggtaacgcagtaatcccttacgcccaccgactgactcttgtatctgatcaactttataaggcggctaaaacaagttgcaatggtgaatacgtgaatgtaaattcaagcaatgccgcatgcattgctgatatcgatgctattgatcagctcatcaaggatataaataaggacaatatcttggaaccagactgtactacttcattgccgagatcaaagaagctaagcacagctcgaagatatctcaaagagttgtccaaaggtttactgagttcaccaaccaacggtcccgcactttggtgtcgggagtataattacatgctcctatacatctgggcaaacactaaagctgtccgagatgctcttggtgtccgaatgggcacaaaattgttatggaaaccatgtaataccacattgacgggttacactcatgaagtcaccagttctctcagttatcatctcaatctcacaaaaagggctgacctacgtgctttgatatacagtggtgaccatgacatgtctgttcctcatattggtacacaagcatggataaatatactgaatttgactatggatgagtactggaggacatggtcccttgatggacaaactaaaggatacacgaagaagttaataaatgattttttcaccttggtatttgctactgtgaagggagcaggccaccttgccgcagagtaccagccaaaggaagttgctagcttgattgatagatggatggcttactaccctctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

473

Amino Acids

52.53

Weight (kDa)

5.53

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
Acc36I ACCTGC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 25
AciI CCGC 5 cut(s) 458, 731, 783, 957, 1356
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 3 cut(s) 473, 769, 1228
AcuI CTGAAG 3 cut(s) 45, 529, 623
AfaI GTAC 6 cut(s) 400, 573, 862, 1204, 1247, 1364
AfiI CCNNNNNNNGG 5 cut(s) 652, 950, 963, 1199, 1372
AflIII ACRYGT 1 cut(s) 1182
AgsI TTSAA 5 cut(s) 57, 69, 301, 417, 774
AjnI CCWGG 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 964
AluBI AGCT 7 cut(s) 65, 175, 817, 889, 899, 1016, 1386
AluI AGCT 7 cut(s) 65, 175, 817, 889, 899, 1016, 1386
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 1345
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 3 cut(s) 473, 769, 1228
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 4 cut(s) 245, 287, 953, 1260
AsuC2I CCSGG 2 cut(s) 102, 249
AsuHPI GGTGA 7 cut(s) 167, 548, 764, 933, 1096, 1184, 1306
AsuNHI GCTAGC 1 cut(s) 1382
AvaII GGWCC 4 cut(s) 245, 287, 953, 1260
BaeGI GKGCMC 1 cut(s) 1049
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BbvI GCAGC 1 cut(s) 184
BccI CCATC 7 cut(s) 422, 559, 581, 662, 1262, 1392, 1396
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 1277
BclI TGATCA 2 cut(s) 715, 811
BcnI CCSGG 2 cut(s) 102, 249
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 1 cut(s) 1383
BfuAI ACCTGC 1 cut(s) 233
BfuI GTATCC 1 cut(s) 1277
BglII AGATCT 1 cut(s) 115
BisI GCNGC 5 cut(s) 173, 459, 732, 783, 1356
BlpI GCTNAGC 1 cut(s) 890
BlsI GCNGC 5 cut(s) 174, 460, 733, 784, 1357
BmcAI AGTACT 1 cut(s) 1247
Bme1390I CCNGG 3 cut(s) 102, 210, 249
Bme18I GGWCC 4 cut(s) 245, 287, 953, 1260
BmgT120I GGNCC 4 cut(s) 245, 287, 953, 1260
BmiI GGNNCC 4 cut(s) 323, 852, 955, 1262
BmrFI CCNGG 3 cut(s) 102, 210, 249
BmrI ACTGGG 1 cut(s) 641
BmsI GCATC 3 cut(s) 376, 793, 1015
BmtI GCTAGC 1 cut(s) 1386
BmuI ACTGGG 1 cut(s) 641
BpmI CTGGAG 4 cut(s) 132, 464, 512, 1270
Bpu1102I GCTNAGC 1 cut(s) 890
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 102, 249
Bsa29I ATCGAT 1 cut(s) 801
BsaAI YACGTR 2 cut(s) 760, 1154
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 3 cut(s) 208, 265, 1317
Bsc4I CCNNNNNNNGG 5 cut(s) 652, 950, 963, 1199, 1372
Bse1I ACTGG 6 cut(s) 142, 392, 406, 647, 1107, 1253
Bse3DI GCAATG 4 cut(s) 754, 784, 789, 869
BseBI CCWGG 1 cut(s) 210
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 3 cut(s) 208, 265, 1317
BseGI GGATG 4 cut(s) 391, 448, 1246, 1407
BseLI CCNNNNNNNGG 5 cut(s) 652, 950, 963, 1199, 1372
BseMI GCAATG 4 cut(s) 754, 784, 789, 869
BseMII CTCAG 3 cut(s) 189, 926, 1129
BseNI ACTGG 6 cut(s) 142, 392, 406, 647, 1107, 1253
BseSI GKGCMC 1 cut(s) 1049
BseXI GCAGC 1 cut(s) 184
BsgI GTGCAG 3 cut(s) 191, 261, 291
BshFI GGCC 1 cut(s) 1347
BshVI ATCGAT 1 cut(s) 801
BsiSI CCGG 2 cut(s) 102, 248
BslFI GGGAC 3 cut(s) 378, 939, 1246
BslI CCNNNNNNNGG 5 cut(s) 652, 950, 963, 1199, 1372
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 3 cut(s) 378, 939, 1246
BsnI GGCC 1 cut(s) 1347
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 1049
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 5 cut(s) 115, 217, 715, 811, 878
Bsp1720I GCTNAGC 1 cut(s) 890
BspACI CCGC 5 cut(s) 458, 731, 783, 957, 1356
BspANI GGCC 1 cut(s) 1347
BspCNI CTCAG 3 cut(s) 190, 927, 1128
BspDI ATCGAT 1 cut(s) 801
BspHI TCATGA 1 cut(s) 1096
BspLI GGNNCC 4 cut(s) 323, 852, 955, 1262
BspMI ACCTGC 1 cut(s) 233
BspOI GCTAGC 1 cut(s) 1386
BspPI GGATC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 4 cut(s) 754, 784, 789, 869
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 6 cut(s) 142, 392, 406, 647, 1107, 1253
BssECI CCNNGG 3 cut(s) 208, 265, 1317
BssMI GATC 5 cut(s) 115, 217, 715, 811, 878
BssT1I CCWWGG 1 cut(s) 1317
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 4 cut(s) 860, 953, 1169, 1333
BstAPI GCANNNNNTGC 2 cut(s) 503, 791
BstAUI TGTACA 1 cut(s) 571
BstBAI YACGTR 2 cut(s) 760, 1154
BstC8I GCNNGC 4 cut(s) 20, 787, 1345, 1384
BstDEI CTNAG 4 cut(s) 198, 890, 935, 1115
BstDSI CCRYGG 1 cut(s) 265
BstEII GGTNACC 1 cut(s) 1172
BstF5I GGATG 4 cut(s) 391, 448, 1246, 1407
BstKTI GATC 5 cut(s) 118, 220, 718, 814, 881
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 5 cut(s) 115, 217, 715, 811, 878
BstMWI GCNNNNNNNGC 2 cut(s) 503, 791
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 3 cut(s) 789, 988, 1186
BstPI GGTNACC 1 cut(s) 1172
BstSCI CCNGG 3 cut(s) 100, 208, 247
BstSLI GKGCMC 1 cut(s) 1049
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 115, 217
BstYI RGATCY 2 cut(s) 115, 217
Bsu15I ATCGAT 1 cut(s) 801
BsuI GTATCC 1 cut(s) 1277
BsuRI GGCC 1 cut(s) 1347
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 4 cut(s) 391, 448, 1246, 1407
BtsIMutI CAGTG 2 cut(s) 553, 1174
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 4 cut(s) 20, 787, 1345, 1384
CciI TCATGA 1 cut(s) 1096
Cfr13I GGNCC 4 cut(s) 245, 287, 953, 1260
ClaI ATCGAT 1 cut(s) 801
CseI GACGC 1 cut(s) 11
Csp6I GTAC 6 cut(s) 399, 572, 861, 1203, 1246, 1363
CviQI GTAC 6 cut(s) 399, 572, 861, 1203, 1246, 1363
DdeI CTNAG 4 cut(s) 198, 890, 935, 1115
DpnI GATC 5 cut(s) 117, 219, 717, 813, 880
DpnII GATC 5 cut(s) 115, 217, 715, 811, 878
Eco130I CCWWGG 1 cut(s) 1317
Eco31I GGTCTC 1 cut(s) 266
Eco32I GATATC 3 cut(s) 632, 799, 908
Eco47I GGWCC 4 cut(s) 245, 287, 953, 1260
Eco57I CTGAAG 3 cut(s) 45, 529, 623
Eco91I GGTNACC 1 cut(s) 1172
EcoO65I GGTNACC 1 cut(s) 1172
EcoRI GAATTC 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 208
EcoRV GATATC 3 cut(s) 632, 799, 908
EcoT14I CCWWGG 1 cut(s) 1317
EcoT22I ATGCAT 1 cut(s) 791
ErhI CCWWGG 1 cut(s) 1317
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 3 cut(s) 378, 939, 1246
FauI CCCGC 1 cut(s) 964
FauNDI CATATG 1 cut(s) 508
FbaI TGATCA 2 cut(s) 715, 811
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 173, 459, 732, 783, 1356
FokI GGATG 4 cut(s) 398, 455, 1253, 1414
Fsp4HI GCNGC 5 cut(s) 173, 459, 732, 783, 1356
FspBI CTAG 1 cut(s) 1383
GluI GCNGC 5 cut(s) 173, 459, 732, 783, 1356
GsuI CTGGAG 4 cut(s) 132, 464, 512, 1270
HaeIII GGCC 1 cut(s) 1347
HapII CCGG 2 cut(s) 102, 248
HgaI GACGC 1 cut(s) 11
HinfI GANTC 6 cut(s) 194, 366, 405, 539, 656, 703
HpaII CCGG 2 cut(s) 102, 248
HphI GGTGA 7 cut(s) 167, 548, 764, 933, 1096, 1184, 1306
Hpy166II GTNNAC 4 cut(s) 26, 932, 941, 1205
Hpy188I TCNGA 6 cut(s) 199, 564, 642, 715, 1022, 1040
Hpy188III TCNNGA 4 cut(s) 111, 481, 971, 1097
Hpy8I GTNNAC 4 cut(s) 26, 932, 941, 1205
HpyAV CCTTC 3 cut(s) 307, 553, 1330
HpyCH4III ACNGT 4 cut(s) 860, 953, 1169, 1333
HpyCH4IV ACGT 3 cut(s) 183, 759, 1153
HpyCH4V TGCA 7 cut(s) 172, 242, 308, 389, 506, 747, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 791
HpyF3I CTNAG 4 cut(s) 198, 890, 935, 1115
HpySE526I ACGT 3 cut(s) 183, 759, 1153
Ksp22I TGATCA 2 cut(s) 715, 811
Kzo9I GATC 5 cut(s) 115, 217, 715, 811, 878
LmnI GCTCC 3 cut(s) 321, 993, 1340
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 3 cut(s) 376, 793, 1015
MaeI CTAG 1 cut(s) 1383
MaeII ACGT 3 cut(s) 183, 759, 1153
MalI GATC 5 cut(s) 117, 219, 717, 813, 880
MboI GATC 5 cut(s) 115, 217, 715, 811, 878
MboII GAAGA 4 cut(s) 110, 176, 915, 1303
MflI RGATCY 2 cut(s) 115, 217
MhlI GDGCHC 1 cut(s) 1049
MluCI AATT 6 cut(s) 301, 473, 769, 979, 1052, 1228
MlyI GAGTC 3 cut(s) 203, 360, 697
MnlI CCTC 6 cut(s) 331, 487, 488, 621, 1203, 1245
Mph1103I ATGCAT 1 cut(s) 791
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 554, 1298, 1420
MslI CAYNNNNRTG 2 cut(s) 964, 1210
MspI CCGG 2 cut(s) 102, 248
MspR9I CCNGG 3 cut(s) 102, 210, 249
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 503, 791
NciI CCSGG 2 cut(s) 102, 249
NdeI CATATG 1 cut(s) 508
NdeII GATC 5 cut(s) 115, 217, 715, 811, 878
NheI GCTAGC 1 cut(s) 1382
NlaIV GGNNCC 4 cut(s) 323, 852, 955, 1262
NmeAIII GCCGAG 1 cut(s) 900
NmuCI GTSAC 4 cut(s) 31, 155, 1102, 1172
NsiI ATGCAT 1 cut(s) 791
NspI RCATGY 3 cut(s) 789, 988, 1186
OliI CACNNNNGTG 1 cut(s) 964
PaeI GCATGC 1 cut(s) 789
PagI TCATGA 1 cut(s) 1096
PciI ACATGT 1 cut(s) 1182
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 405, 539, 656
PflFI GACNNNGTC 1 cut(s) 1258
PkrI GCNGC 5 cut(s) 174, 460, 733, 784, 1357
PleI GAGTC 3 cut(s) 202, 360, 697
PpsI GAGTC 3 cut(s) 202, 360, 697
Ppu21I YACGTR 2 cut(s) 760, 1154
PscI ACATGT 1 cut(s) 1182
PsiI TTATAA 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 208
PspEI GGTNACC 1 cut(s) 1172
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 4 cut(s) 323, 852, 955, 1262
PspPI GGNCC 4 cut(s) 245, 287, 953, 1260
PsuI RGATCY 2 cut(s) 115, 217
PsyI GACNNNGTC 1 cut(s) 1258
RsaI GTAC 6 cut(s) 400, 573, 862, 1204, 1247, 1364
RsaNI GTAC 6 cut(s) 399, 572, 861, 1203, 1246, 1363
RseI CAYNNNNRTG 2 cut(s) 964, 1210
SaqAI TTAA 3 cut(s) 554, 1298, 1420
SatI GCNGC 5 cut(s) 173, 459, 732, 783, 1356
Sau3AI GATC 5 cut(s) 115, 217, 715, 811, 878
Sau96I GGNCC 4 cut(s) 245, 287, 953, 1260
ScaI AGTACT 1 cut(s) 1247
SchI GAGTC 3 cut(s) 203, 360, 697
ScrFI CCNGG 3 cut(s) 102, 210, 249
SduI GDGCHC 1 cut(s) 1049
SfaNI GCATC 3 cut(s) 376, 793, 1015
SinI GGWCC 4 cut(s) 245, 287, 953, 1260
SmiMI CAYNNNNRTG 2 cut(s) 964, 1210
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SphI GCATGC 1 cut(s) 789
Sse9I AATT 6 cut(s) 301, 473, 769, 979, 1052, 1228
SsiI CCGC 5 cut(s) 458, 731, 783, 957, 1356
SspMI CTAG 1 cut(s) 1383
StyD4I CCNGG 3 cut(s) 100, 208, 247
StyI CCWWGG 1 cut(s) 1317
TaaI ACNGT 4 cut(s) 860, 953, 1169, 1333
TaiI ACGT 3 cut(s) 186, 762, 1156
TaqI TCGA 3 cut(s) 192, 801, 901
TasI AATT 6 cut(s) 301, 473, 769, 979, 1052, 1228
TatI WGTACW 3 cut(s) 571, 860, 1245
TauI GCSGC 4 cut(s) 461, 734, 785, 1358
TfiI GAWTC 3 cut(s) 405, 539, 656
Tru1I TTAA 3 cut(s) 554, 1298, 1420
Tru9I TTAA 3 cut(s) 554, 1298, 1420
TscAI CASTG 2 cut(s) 553, 1174
TseFI GTSAC 4 cut(s) 31, 155, 1102, 1172
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 4 cut(s) 31, 155, 1102, 1172
TspDTI ATGAA 7 cut(s) 17, 177, 342, 486, 632, 858, 1113
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 2 cut(s) 553, 1174
Tth111I GACNNNGTC 1 cut(s) 1258
VpaK11BI GGWCC 4 cut(s) 245, 287, 953, 1260
XapI RAATTY 3 cut(s) 473, 769, 1228
XceI RCATGY 3 cut(s) 789, 988, 1186
XmiI GTMKAC 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 1383
ZrmI AGTACT 1 cut(s) 1247
Zsp2I ATGCAT 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.