Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004094.1

Orthogroup ID

OG0000839

Physical Location & Seq

Genomic Coordinates Forward (+)

61314 .. 62611

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004094.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgaatggacatgtcaatttgcagctcataaatgacgtaaataccttacacgtcttggaaccagtgtgtagtgaaggcactgcccgaagatatctcaaagatttgtccgaaggtttactaagttcagcaactactggtcctgcatattggtgtaggagttataatcatatgctcgcctacaattgggcaaaccaccaaagtgttcaagatgctcttggcgtccgaaggggcacaaaaagattttggcaatactgtaattcaaccctggcgtacactcaagaagtcactagtgttattagtcttcatcaaagtttcacggaggttggcctacgtgctctgatctacagtggtgatcacgacatgacaattcctcacattgctacacaaaaatggataaactttctcaatatgactctgaatgagacctggagggcatggtcagttgataaccaaactgcagggtacacaaagaagtttgtaaatgaagctttcaatttgacgtttgcgactgtaaagggaggaggccacattgctgcagagtacagggtcaaagaatgctctgcaatgattgatagatggatggctcagtaccctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

199

Amino Acids

22.67

Weight (kDa)

7.74

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06480 FvH4_4g06480 FvH4_4g06510 FvH4_4g06510 FvH4_4g06510 FvH4_4g06510 FvH4_4g07930 FvH4_4g07930 FvH4_4g07930 FvH4_4g07930
rosa_chinensis	RchiOBHm_Chr4g0398271 RchiOBHm_Chr4g0398281 RchiOBHm_Chr4g0398291 RchiOBHm_Chr4g0398311 RchiOBHm_Chr4g0401601 RchiOBHm_Chr4g0401701
rosa_laevigata	RLG00000009369 RLG00000009372
rosa_multiflora	Rmu_co8114566.1_g000001 Rmu_sc0002657.1_g000001 Rmu_sc0004094.1_g000009 Rmu_sc0004094.1_g000010 Rmu_sc0004094.1_g000014 Rmu_sc0004094.1_g000030 Rmu_sc0004835.1_g000012 Rmu_sc0004835.1_g000029 Rmu_sc0004835.1_g000031 Rmu_sc0004835.1_g000032
rosa_roxburghii	Rroxscaffold_5G00343260 Rroxscaffold_5G00343270 Rroxscaffold_5G00343280 Rroxscaffold_5G00343300 Rroxscaffold_5G00343310 Rroxscaffold_5G00343320
rosa_rugosa	Rorug04G0007300 Rorug04G0007300 Rorug04G0007400 Rorug04G0007500 Rorug04G0007600 Rorug04G0007600 Rorug04G0007700 Rorug04G0030500
rosa_samantha	Rh1BG213300 Rh4AG085000 Rh4AG085100 Rh4AG085200 Rh4AG085400 Rh4AG108100 Rh4BG082200 Rh4BG082300 Rh4BG082400 Rh4BG082500 Rh4BG102000 Rh4CG092400 Rh4CG092800 Rh4CG116400 Rh4DG077300 Rh4DG077400 Rh4DG077500 Rh4DG099300 Rh6CG489100
rosa_wichuraiana	Rw4G007050 Rw4G007060 Rw4G007070 Rw4G007080 Rw4G007120 Rw4G008780 Rw4G008790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	4 cut(s)	272, 464, 542, 590
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflIII	ACRYGT	2 cut(s)	10, 49
AgsI	TTSAA	3 cut(s)	206, 261, 493
AhlI	ACTAGT	1 cut(s)	287
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	264, 425
AleI	CACNNNNGTG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	25, 488
AluI	AGCT	2 cut(s)	25, 488
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	416
AoxI	GGCC	2 cut(s)	325, 523
ApeKI	GCWGC	2 cut(s)	22, 533
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	34, 520
BccI	CCATC	2 cut(s)	570, 574
BciT130I	CCWGG	2 cut(s)	266, 427
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	416
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	3 cut(s)	343, 456, 534
BisI	GCNGC	2 cut(s)	23, 534
BlsI	GCNGC	2 cut(s)	24, 535
Bme1390I	CCNGG	2 cut(s)	266, 427
Bme18I	GGWCC	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	266, 427
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	62, 139
Bse3DI	GCAATG	3 cut(s)	375, 528, 570
BseBI	CCWGG	2 cut(s)	266, 427
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	3 cut(s)	375, 528, 570
BseMII	CTCAG	1 cut(s)	599
BseNI	ACTGG	2 cut(s)	62, 139
BseRI	GAGGAG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	34, 520
BshFI	GGCC	2 cut(s)	327, 525
BsiHKAI	GWGCWC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	327, 525
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	233, 337
Bsp143I	GATC	2 cut(s)	339, 352
BspANI	GGCC	2 cut(s)	327, 525
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	60
BspMAI	CTGCAG	2 cut(s)	460, 538
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	3 cut(s)	375, 528, 570
BsrI	ACTGG	2 cut(s)	62, 139
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	339, 352
BssNI	GRCGYC	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	266, 427
Bst4CI	ACNGT	3 cut(s)	254, 347, 511
BstACI	GRCGYC	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	119, 585
BstF5I	GGATG	1 cut(s)	585
BstKTI	GATC	2 cut(s)	342, 355
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	339, 352
BstNI	CCWGG	2 cut(s)	266, 427
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	264, 425
BstSFI	CTRYAG	3 cut(s)	343, 456, 534
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	34, 520
BstV2I	GAAGAC	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	327, 525
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	585
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	69, 78, 352
Cac8I	GCNNGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	137
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	4 cut(s)	271, 463, 541, 589
CviAII	CATG	3 cut(s)	11, 361, 435
CviJI	RGCY	5 cut(s)	25, 327, 488, 525, 584
CviKI_1	RGCY	5 cut(s)	25, 327, 488, 525, 584
CviQI	GTAC	4 cut(s)	271, 463, 541, 589
DdeI	CTNAG	2 cut(s)	119, 585
DpnI	GATC	2 cut(s)	341, 354
DpnII	GATC	2 cut(s)	339, 352
Eco31I	GGTCTC	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	264, 425
EcoRV	GATATC	1 cut(s)	92
FaeI	CATG	3 cut(s)	14, 364, 438
FaiI	YATR	9 cut(s)	12, 29, 145, 162, 168, 170, 362, 410, 436
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	3 cut(s)	10, 360, 434
FauNDI	CATATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	23, 534
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	2 cut(s)	23, 534
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	2 cut(s)	23, 534
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	2 cut(s)	327, 525
HgaI	GACGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	14, 364, 438
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	1 cut(s)	412
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	3 cut(s)	116, 273, 465
Hpy188I	TCNGA	4 cut(s)	109, 224, 339, 417
Hpy188III	TCNNGA	3 cut(s)	206, 278, 356
Hpy8I	GTNNAC	3 cut(s)	116, 273, 465
HpyAV	CCTTC	3 cut(s)	68, 104, 219
HpyCH4III	ACNGT	3 cut(s)	254, 347, 511
HpyCH4IV	ACGT	4 cut(s)	36, 51, 331, 500
HpyCH4V	TGCA	5 cut(s)	22, 143, 458, 536, 563
HpyF3I	CTNAG	2 cut(s)	119, 585
HpySE526I	ACGT	4 cut(s)	36, 51, 331, 500
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	14, 364, 438
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	339, 352
LpnPI	CCDG	9 cut(s)	75, 120, 153, 251, 278, 412, 439, 444, 529
Lsp1109I	GCAGC	2 cut(s)	34, 520
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	4 cut(s)	36, 51, 331, 500
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	341, 354
MboI	GATC	2 cut(s)	339, 352
MboII	GAAGA	2 cut(s)	99, 293
MfeI	CAATTG	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	233, 337
MluCI	AATT	5 cut(s)	16, 181, 256, 366, 493
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	5 cut(s)	313, 381, 423, 512, 515
MslI	CAYNNNNRTG	3 cut(s)	148, 198, 388
MspR9I	CCNGG	2 cut(s)	266, 427
MunI	CAATTG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	2 cut(s)	266, 427
NdeI	CATATG	1 cut(s)	168
NdeII	GATC	2 cut(s)	339, 352
NlaIII	CATG	3 cut(s)	14, 364, 438
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	14
OliI	CACNNNNGTG	1 cut(s)	198
PciI	ACATGT	1 cut(s)	10
PctI	GAATGC	1 cut(s)	560
PkrI	GCNGC	2 cut(s)	24, 535
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	332
PscI	ACATGT	1 cut(s)	10
PsiI	TTATAA	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	264, 425
PspGI	CCWGG	2 cut(s)	264, 425
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	137
PstI	CTGCAG	2 cut(s)	460, 538
RsaI	GTAC	4 cut(s)	272, 464, 542, 590
RsaNI	GTAC	4 cut(s)	271, 463, 541, 589
RseI	CAYNNNNRTG	3 cut(s)	148, 198, 388
SatI	GCNGC	2 cut(s)	23, 534
Sau3AI	GATC	2 cut(s)	339, 352
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	266, 427
SduI	GDGCHC	2 cut(s)	233, 337
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	3 cut(s)	343, 456, 534
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	3 cut(s)	148, 198, 388
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	5 cut(s)	16, 181, 256, 366, 493
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	264, 425
TaaI	ACNGT	3 cut(s)	254, 347, 511
TaiI	ACGT	4 cut(s)	39, 54, 334, 503
TasI	AATT	5 cut(s)	16, 181, 256, 366, 493
TatI	WGTACW	1 cut(s)	540
TscAI	CASTG	3 cut(s)	69, 85, 352
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	22, 533
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	17, 293, 498
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	3 cut(s)	69, 85, 352
VpaK11BI	GGWCC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.