Rw4G007070

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000839
Physical Location & Seq
Forward (+)
14781681 .. 14785391
3711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007070.1

Sequence Viewer

Length: 1434 bp
ATGTTGCCCAAAATGAATATGTTCATGGGCTTGCGTCTACTTGTGACATTATTGGGTGTAATCACTTCAACTTCAGCTTCAAACATCACTACGAAAATCGTTACCACTCTACCCGGTTACTCTGGAGATCTTCCTTTCACATTAGAAACTGGATATATCGGCGTAGGTGACAATGAAGAAGTGCAGCTATTTTACGTTTTTGTCGAGTCTGAGAGAAGCCCTGGACAAGATCCACTTGTGTTACGATTTGGTGCAGGTCCGGGTTGCTCTGGTCTCCACGGCTTTTTCTTTGAGAGTGGTCCATTATCCTTCAATTCTGCACATTACAACGGGAGCCTACCAACACTTGAGGACAACCCTTATTCATGGACAAAGGGACTCAACATCATATTCTTGGATGCACCAGTTGGTACTGGATTCTCCTATTCAACAACCCAAGATGGTTACTATGTGGATGACTATAAATATGCGGCACAAGGCTATGAATTCCTCCAGAAGTGGCTGGAGGCACACCCTGCATATGTGGAAAATCTACTCTACATTAGTGGTGAATCCTTCAGTGGCTTAATAGTTCCGATGGTTGTACAAAAGATAGTAGATGGTAACGAAAATGGAAGTGTGCCTCTAATGAATATCAAGGGATATCTGCTTCAGAACCCAGTAACGGATTCAGTTATTGATGGTAATGCAGTAATCCCTTATGCCCACCGGCTGACTCTTGTATCTGATCAACTTTATAAGGCGGCTAAAACAAGTTGCAATGGTGAATACGTGAATGTAAATTCAAGCAATGCCGCATGCATTGCTGATATCGATGCTATTGATCAGCTCATCAAGGATATAAATAAGGACAATATCTTGGAACCAGACTGTACTACTTCATTGCCGAGATCAAAGAAGCTAAGCACAGCTCGAAGATATCTCAAAGAGTTGTCCAAAGGTTTACTGAGTTCACCAACCAACGGTCCCGCATTTTGGTGTCGGGAGTATAATTACATGCTCCTATACATCTGGGCAAACACTAAAGCTGTCCGAGATGCTCTTGGTGTCCGAATGGGCACAAAATTGTTATGGAAACCATGTAATACCACATTGACGGGTTACACTCATGAAGTCACCAGTTCTCTCAGTTATCATCTCAATCTCACAAAAAGGGCTGACCTACGTGCTTTGATATACAGTGGTGACCATGACATGTCTGTTCCTCATATTGGTACACAAGCATGGATAAATATACTGAATTTGACTGTGGATGAGTACTGGAGGACATGGTCCCTTGATGGACAAACTAAAGGATACACGAAGAAGTTAATAAATGATTTTTTCACCTTGGTATTTGCTACTGTGAAGGGAGCAGGCCACCGTGCCGCAGAGTACCAGCCAAAGGAAGTTGCTAGCTTGATTGATAGATGGATGGCTTACTACCCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

477

Amino Acids

53.04

Weight (kDa)

5.76

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 472 3.9e-111 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
Acc36I ACCTGC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 37
AciI CCGC 5 cut(s) 470, 743, 795, 969, 1368
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 3 cut(s) 485, 781, 1240
AcuI CTGAAG 3 cut(s) 57, 541, 635
AfaI GTAC 6 cut(s) 412, 585, 874, 1216, 1259, 1376
AfiI CCNNNNNNNGG 5 cut(s) 664, 962, 975, 1211, 1384
AflIII ACRYGT 1 cut(s) 1194
AgsI TTSAA 5 cut(s) 69, 81, 313, 429, 786
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 7 cut(s) 77, 187, 829, 901, 911, 1028, 1398
AluI AGCT 7 cut(s) 77, 187, 829, 901, 911, 1028, 1398
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 1 cut(s) 224
AoxI GGCC 1 cut(s) 1357
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 3 cut(s) 485, 781, 1240
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 4 cut(s) 257, 299, 965, 1272
AsuC2I CCSGG 2 cut(s) 114, 261
AsuHPI GGTGA 7 cut(s) 179, 560, 776, 945, 1108, 1196, 1318
AsuNHI GCTAGC 1 cut(s) 1394
AvaII GGWCC 4 cut(s) 257, 299, 965, 1272
BaeGI GKGCMC 1 cut(s) 1061
BaeI ACNNNNGTAYC 2 cut(s) 705, 738
BbvI GCAGC 1 cut(s) 196
BccI CCATC 7 cut(s) 434, 571, 593, 674, 1274, 1404, 1408
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 1289
BclI TGATCA 2 cut(s) 727, 823
BcnI CCSGG 2 cut(s) 114, 261
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 1395
BfuAI ACCTGC 1 cut(s) 245
BfuI GTATCC 1 cut(s) 1289
BglII AGATCT 1 cut(s) 127
BisI GCNGC 5 cut(s) 185, 471, 744, 795, 1368
BlpI GCTNAGC 1 cut(s) 902
BlsI GCNGC 5 cut(s) 186, 472, 745, 796, 1369
BmcAI AGTACT 1 cut(s) 1259
Bme1390I CCNGG 3 cut(s) 114, 222, 261
Bme18I GGWCC 4 cut(s) 257, 299, 965, 1272
BmgT120I GGNCC 4 cut(s) 257, 299, 965, 1272
BmiI GGNNCC 4 cut(s) 335, 864, 967, 1274
BmrFI CCNGG 3 cut(s) 114, 222, 261
BmrI ACTGGG 1 cut(s) 653
BmsI GCATC 3 cut(s) 388, 805, 1027
BmtI GCTAGC 1 cut(s) 1398
BmuI ACTGGG 1 cut(s) 653
BpmI CTGGAG 4 cut(s) 144, 476, 524, 1282
Bpu1102I GCTNAGC 1 cut(s) 902
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 114, 261
Bsa29I ATCGAT 1 cut(s) 813
BsaAI YACGTR 2 cut(s) 772, 1166
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 220, 277, 1329
Bsc4I CCNNNNNNNGG 5 cut(s) 664, 962, 975, 1211, 1384
Bse118I RCCGGY 1 cut(s) 708
Bse1I ACTGG 6 cut(s) 154, 404, 418, 659, 1119, 1265
Bse3DI GCAATG 4 cut(s) 766, 796, 801, 881
BseBI CCWGG 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 813
BseDI CCNNGG 3 cut(s) 220, 277, 1329
BseGI GGATG 4 cut(s) 403, 460, 1258, 1419
BseLI CCNNNNNNNGG 5 cut(s) 664, 962, 975, 1211, 1384
BseMI GCAATG 4 cut(s) 766, 796, 801, 881
BseMII CTCAG 3 cut(s) 201, 938, 1141
BseNI ACTGG 6 cut(s) 154, 404, 418, 659, 1119, 1265
BseSI GKGCMC 1 cut(s) 1061
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 3 cut(s) 203, 273, 303
BshFI GGCC 1 cut(s) 1359
BshVI ATCGAT 1 cut(s) 813
BsiSI CCGG 3 cut(s) 114, 260, 709
BslFI GGGAC 3 cut(s) 390, 951, 1258
BslI CCNNNNNNNGG 5 cut(s) 664, 962, 975, 1211, 1384
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 3 cut(s) 390, 951, 1258
BsnI GGCC 1 cut(s) 1359
Bso31I GGTCTC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 1061
Bsp1407I TGTACA 1 cut(s) 583
Bsp143I GATC 5 cut(s) 127, 229, 727, 823, 890
Bsp1720I GCTNAGC 1 cut(s) 902
BspACI CCGC 5 cut(s) 470, 743, 795, 969, 1368
BspANI GGCC 1 cut(s) 1359
BspCNI CTCAG 3 cut(s) 202, 939, 1140
BspDI ATCGAT 1 cut(s) 813
BspHI TCATGA 1 cut(s) 1108
BspLI GGNNCC 4 cut(s) 335, 864, 967, 1274
BspMI ACCTGC 1 cut(s) 245
BspOI GCTAGC 1 cut(s) 1398
BspPI GGATC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 4 cut(s) 766, 796, 801, 881
BsrFI RCCGGY 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 583
BsrI ACTGG 6 cut(s) 154, 404, 418, 659, 1119, 1265
BssAI RCCGGY 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 220, 277, 1329
BssMI GATC 5 cut(s) 127, 229, 727, 823, 890
BssT1I CCWWGG 1 cut(s) 1329
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 6 cut(s) 872, 965, 1181, 1249, 1345, 1364
BstAPI GCANNNNNTGC 2 cut(s) 515, 803
BstAUI TGTACA 1 cut(s) 583
BstBAI YACGTR 2 cut(s) 772, 1166
BstC8I GCNNGC 4 cut(s) 32, 799, 1357, 1396
BstDEI CTNAG 4 cut(s) 210, 902, 947, 1127
BstDSI CCRYGG 1 cut(s) 277
BstEII GGTNACC 1 cut(s) 1184
BstF5I GGATG 4 cut(s) 403, 460, 1258, 1419
BstKTI GATC 5 cut(s) 130, 232, 730, 826, 893
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 5 cut(s) 127, 229, 727, 823, 890
BstMWI GCNNNNNNNGC 2 cut(s) 515, 803
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 3 cut(s) 801, 1000, 1198
BstPI GGTNACC 1 cut(s) 1184
BstSCI CCNGG 3 cut(s) 112, 220, 259
BstSLI GKGCMC 1 cut(s) 1061
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 127, 229
BstYI RGATCY 2 cut(s) 127, 229
Bsu15I ATCGAT 1 cut(s) 813
BsuI GTATCC 1 cut(s) 1289
BsuRI GGCC 1 cut(s) 1359
BsuTUI ATCGAT 1 cut(s) 813
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 4 cut(s) 403, 460, 1258, 1419
BtsIMutI CAGTG 2 cut(s) 565, 1186
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 4 cut(s) 32, 799, 1357, 1396
CciI TCATGA 1 cut(s) 1108
Cfr10I RCCGGY 1 cut(s) 708
Cfr13I GGNCC 4 cut(s) 257, 299, 965, 1272
ClaI ATCGAT 1 cut(s) 813
CseI GACGC 1 cut(s) 23
Csp6I GTAC 6 cut(s) 411, 584, 873, 1215, 1258, 1375
CviQI GTAC 6 cut(s) 411, 584, 873, 1215, 1258, 1375
DdeI CTNAG 4 cut(s) 210, 902, 947, 1127
DpnI GATC 5 cut(s) 129, 231, 729, 825, 892
DpnII GATC 5 cut(s) 127, 229, 727, 823, 890
Eco130I CCWWGG 1 cut(s) 1329
Eco31I GGTCTC 1 cut(s) 278
Eco32I GATATC 3 cut(s) 644, 811, 920
Eco47I GGWCC 4 cut(s) 257, 299, 965, 1272
Eco57I CTGAAG 3 cut(s) 57, 541, 635
Eco91I GGTNACC 1 cut(s) 1184
EcoO65I GGTNACC 1 cut(s) 1184
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 3 cut(s) 644, 811, 920
EcoT14I CCWWGG 1 cut(s) 1329
EcoT22I ATGCAT 1 cut(s) 803
ErhI CCWWGG 1 cut(s) 1329
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 3 cut(s) 390, 951, 1258
FauI CCCGC 1 cut(s) 976
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 2 cut(s) 727, 823
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 185, 471, 744, 795, 1368
FokI GGATG 4 cut(s) 410, 467, 1265, 1426
Fsp4HI GCNGC 5 cut(s) 185, 471, 744, 795, 1368
FspBI CTAG 1 cut(s) 1395
GluI GCNGC 5 cut(s) 185, 471, 744, 795, 1368
GsuI CTGGAG 4 cut(s) 144, 476, 524, 1282
HaeIII GGCC 1 cut(s) 1359
HapII CCGG 3 cut(s) 114, 260, 709
HgaI GACGC 1 cut(s) 23
HinfI GANTC 6 cut(s) 206, 378, 417, 551, 668, 715
HpaII CCGG 3 cut(s) 114, 260, 709
HphI GGTGA 7 cut(s) 179, 560, 776, 945, 1108, 1196, 1318
Hpy166II GTNNAC 4 cut(s) 38, 944, 953, 1217
Hpy188I TCNGA 6 cut(s) 211, 576, 654, 727, 1034, 1052
Hpy188III TCNNGA 4 cut(s) 123, 493, 983, 1109
Hpy8I GTNNAC 4 cut(s) 38, 944, 953, 1217
HpyAV CCTTC 3 cut(s) 319, 565, 1342
HpyCH4III ACNGT 6 cut(s) 872, 965, 1181, 1249, 1345, 1364
HpyCH4IV ACGT 3 cut(s) 195, 771, 1165
HpyCH4V TGCA 8 cut(s) 184, 254, 320, 401, 518, 689, 759, 801
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 803
HpyF3I CTNAG 4 cut(s) 210, 902, 947, 1127
HpySE526I ACGT 3 cut(s) 195, 771, 1165
Ksp22I TGATCA 2 cut(s) 727, 823
Kzo9I GATC 5 cut(s) 127, 229, 727, 823, 890
LmnI GCTCC 3 cut(s) 333, 1005, 1352
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 3 cut(s) 388, 805, 1027
MaeI CTAG 1 cut(s) 1395
MaeII ACGT 3 cut(s) 195, 771, 1165
MalI GATC 5 cut(s) 129, 231, 729, 825, 892
MboI GATC 5 cut(s) 127, 229, 727, 823, 890
MboII GAAGA 4 cut(s) 122, 188, 927, 1315
MflI RGATCY 2 cut(s) 127, 229
MhlI GDGCHC 1 cut(s) 1061
MluCI AATT 6 cut(s) 313, 485, 781, 991, 1064, 1240
MlyI GAGTC 3 cut(s) 215, 372, 709
MnlI CCTC 6 cut(s) 343, 499, 500, 633, 1215, 1257
Mph1103I ATGCAT 1 cut(s) 803
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 3 cut(s) 566, 1310, 1432
MslI CAYNNNNRTG 2 cut(s) 976, 1222
MspI CCGG 3 cut(s) 114, 260, 709
MspR9I CCNGG 3 cut(s) 114, 222, 261
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 515, 803
NciI CCSGG 2 cut(s) 114, 261
NdeI CATATG 1 cut(s) 520
NdeII GATC 5 cut(s) 127, 229, 727, 823, 890
NheI GCTAGC 1 cut(s) 1394
NlaIV GGNNCC 4 cut(s) 335, 864, 967, 1274
NmeAIII GCCGAG 1 cut(s) 912
NmuCI GTSAC 4 cut(s) 43, 167, 1114, 1184
NsiI ATGCAT 1 cut(s) 803
NspI RCATGY 3 cut(s) 801, 1000, 1198
PaeI GCATGC 1 cut(s) 801
PagI TCATGA 1 cut(s) 1108
PciI ACATGT 1 cut(s) 1194
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 3 cut(s) 417, 551, 668
PflFI GACNNNGTC 1 cut(s) 1270
PkrI GCNGC 5 cut(s) 186, 472, 745, 796, 1369
PleI GAGTC 3 cut(s) 214, 372, 709
PpsI GAGTC 3 cut(s) 214, 372, 709
Ppu21I YACGTR 2 cut(s) 772, 1166
PscI ACATGT 1 cut(s) 1194
PsiI TTATAA 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 220
PspEI GGTNACC 1 cut(s) 1184
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 4 cut(s) 335, 864, 967, 1274
PspPI GGNCC 4 cut(s) 257, 299, 965, 1272
PsuI RGATCY 2 cut(s) 127, 229
PsyI GACNNNGTC 1 cut(s) 1270
RsaI GTAC 6 cut(s) 412, 585, 874, 1216, 1259, 1376
RsaNI GTAC 6 cut(s) 411, 584, 873, 1215, 1258, 1375
RseI CAYNNNNRTG 2 cut(s) 976, 1222
SaqAI TTAA 3 cut(s) 566, 1310, 1432
SatI GCNGC 5 cut(s) 185, 471, 744, 795, 1368
Sau3AI GATC 5 cut(s) 127, 229, 727, 823, 890
Sau96I GGNCC 4 cut(s) 257, 299, 965, 1272
ScaI AGTACT 1 cut(s) 1259
SchI GAGTC 3 cut(s) 215, 372, 709
ScrFI CCNGG 3 cut(s) 114, 222, 261
SduI GDGCHC 1 cut(s) 1061
SfaNI GCATC 3 cut(s) 388, 805, 1027
SinI GGWCC 4 cut(s) 257, 299, 965, 1272
SmiMI CAYNNNNRTG 2 cut(s) 976, 1222
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 1 cut(s) 801
Sse9I AATT 6 cut(s) 313, 485, 781, 991, 1064, 1240
SsiI CCGC 5 cut(s) 470, 743, 795, 969, 1368
SspMI CTAG 1 cut(s) 1395
StyD4I CCNGG 3 cut(s) 112, 220, 259
StyI CCWWGG 1 cut(s) 1329
TaaI ACNGT 6 cut(s) 872, 965, 1181, 1249, 1345, 1364
TaiI ACGT 3 cut(s) 198, 774, 1168
TaqI TCGA 3 cut(s) 204, 813, 913
TasI AATT 6 cut(s) 313, 485, 781, 991, 1064, 1240
TatI WGTACW 3 cut(s) 583, 872, 1257
TauI GCSGC 4 cut(s) 473, 746, 797, 1370
TfiI GAWTC 3 cut(s) 417, 551, 668
Tru1I TTAA 3 cut(s) 566, 1310, 1432
Tru9I TTAA 3 cut(s) 566, 1310, 1432
TscAI CASTG 2 cut(s) 565, 1186
TseFI GTSAC 4 cut(s) 43, 167, 1114, 1184
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 4 cut(s) 43, 167, 1114, 1184
TspDTI ATGAA 8 cut(s) 13, 29, 189, 354, 498, 644, 870, 1125
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 2 cut(s) 565, 1186
Tth111I GACNNNGTC 1 cut(s) 1270
VpaK11BI GGWCC 4 cut(s) 257, 299, 965, 1272
XapI RAATTY 3 cut(s) 485, 781, 1240
XceI RCATGY 3 cut(s) 801, 1000, 1198
XmiI GTMKAC 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 1 cut(s) 1395
ZrmI AGTACT 1 cut(s) 1259
Zsp2I ATGCAT 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.