Rh4AG085400

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000839
Physical Location & Seq
Reverse (-)
17869509 .. 17874545
5037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG085400.1

Sequence Viewer

Length: 1152 bp
ATGCTTTGCACATATATAGGTCCATTGGTTTTCAACTACAAAGATTACAATGGAAGCCTACCAACACTTCAGGACAATCCTTATGCATGGACACAGGGACTCAACATCATATACTTGGATGCACCAGTTGGTGCCGGATACTCCTACTCAGAAACCCAAAGTGGTTATGTTATGGATGACTATAAATTTGTGGCTCAAATTTATGAATTTCTGCAAAAGTGGCTAGAGGCACACCCGACATATTTGGAAAATCTACTCTATATTGGCGGTGACTCTTATTCTGGCATACCTATTCCCATGCTTGCAGAACAAATAATTGATGGTAATGAAAATGGAAGTGTGCCTATGATGAATCTCAAAGGGTATGTGCTTGGGAACCCAGTAACTGATTCTGTCATTGATATGAATGCAAGAGTTACTTATGCTCACAGGTTGTCTCTTGTGTCGGATCAACTGTATAAGGCTGCTAAAACAAGTTGCAATGGAGATTATGTAAATGTAGATTCAAGCAATGATGCATGCATAGCAGATATTGATGCCATTTCTGAGCTCACCAATGACATAAATTTGGTACACATCTTGGAACCATATTGTAGTAATGCATTGCCTACAGCAAAGGAGATGTGTCAAGCTCGTAGATACCTCAAAGACTTGTCCAAAGGTTTACTAAGTTCACCACCTAACGGTCCGGCACTTTGGTGTCGAAGTTATAATCACATGCTCGCCTCAGTTTGGGCAAACAACAAAGGTGTCCAAGATGCTCTTGGTGTCCGAAGGGGCACCAAACAGTTTTGGCAGTACTGTAATACCACATTGGCTTACACTAAAGTTGCCACAAGTGTAGTGAGTTATCATCAAATTCTCTCAAAGAGGGCTGACCTTCGTGCTCTGATATACAGTGGTGACCATGACATGTCAATTCCTCATATTGGTACACAAGAATGGATAAAGACTCTGAATTTGACTGTGGACGAGTCCTGGAGGACATGGTCAATTGATGGCCAAACTGCAGGATACACAAAGAAGTTAATCAATGAGGTTTTCAGTTTGACGTTCGTCACTATAAAGGGTGCAGGCCACTTTGCGGCAGAGTATAAAGTCAAGGAATGTGCTGCCATGATTGATCGATGGATGGGTTACTTCCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

383

Amino Acids

42.9

Weight (kDa)

5.49

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 6 - 378 4.4e-89 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AccB1I GGYRCC 2 cut(s) 131, 779
AciI CCGC 2 cut(s) 267, 1085
AclWI GGATC 1 cut(s) 456
AcoI YGGCCR 1 cut(s) 1000
AcsI RAATTY 6 cut(s) 185, 198, 206, 565, 858, 958
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 3 cut(s) 573, 800, 934
AfiI CCNNNNNNNGG 4 cut(s) 683, 732, 929, 1084
AflIII ACRYGT 1 cut(s) 912
AgsI TTSAA 2 cut(s) 34, 507
AjnI CCWGG 1 cut(s) 977
AleI CACNNNNGTG 1 cut(s) 697
AluBI AGCT 2 cut(s) 550, 632
AluI AGCT 2 cut(s) 550, 632
Alw21I GWGCWC 2 cut(s) 552, 889
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 1 cut(s) 456
AlwNI CAGNNNCTG 1 cut(s) 386
AoxI GGCC 2 cut(s) 1000, 1075
ApeKI GCWGC 2 cut(s) 464, 1112
ApoI RAATTY 6 cut(s) 185, 198, 206, 565, 858, 958
ArsI GACNNNNNNTTYG 4 cut(s) 170, 202, 943, 975
AspS9I GGNCC 2 cut(s) 20, 686
AsuHPI GGTGA 4 cut(s) 281, 544, 666, 914
AvaII GGWCC 2 cut(s) 20, 686
BaeGI GKGCMC 1 cut(s) 782
BalI TGGCCA 1 cut(s) 1002
BanI GGYRCC 2 cut(s) 131, 779
BanII GRGCYC 1 cut(s) 552
Bbv12I GWGCWC 2 cut(s) 552, 889
BbvI GCAGC 2 cut(s) 451, 1099
BccI CCATC 4 cut(s) 314, 992, 1122, 1126
BciT130I CCWGG 1 cut(s) 979
BciVI GTATCC 2 cut(s) 131, 1007
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 2 cut(s) 609, 1008
BfuI GTATCC 2 cut(s) 131, 1007
BisI GCNGC 3 cut(s) 465, 1086, 1113
BlsI GCNGC 3 cut(s) 466, 1087, 1114
BmcAI AGTACT 1 cut(s) 800
Bme1390I CCNGG 1 cut(s) 979
Bme18I GGWCC 2 cut(s) 20, 686
BmgT120I GGNCC 2 cut(s) 20, 686
BmiI GGNNCC 4 cut(s) 133, 377, 585, 781
BmrFI CCNGG 1 cut(s) 979
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 4 cut(s) 109, 505, 526, 748
BmuI ACTGGG 1 cut(s) 374
BoxI GACNNNNGTC 1 cut(s) 1055
BpmI CTGGAG 1 cut(s) 1000
Bsa29I ATCGAT 1 cut(s) 1126
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 4 cut(s) 683, 732, 929, 1084
Bse1I ACTGG 2 cut(s) 125, 380
Bse3DI GCAATG 3 cut(s) 487, 517, 602
BseBI CCWGG 1 cut(s) 979
BseCI ATCGAT 1 cut(s) 1126
BseGI GGATG 3 cut(s) 124, 181, 1137
BseLI CCNNNNNNNGG 4 cut(s) 683, 732, 929, 1084
BseMI GCAATG 3 cut(s) 487, 517, 602
BseMII CTCAG 3 cut(s) 162, 537, 741
BseNI ACTGG 2 cut(s) 125, 380
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 2 cut(s) 451, 1099
BsgI GTGCAG 1 cut(s) 1092
BshFI GGCC 2 cut(s) 1002, 1077
BshNI GGYRCC 2 cut(s) 131, 779
BshVI ATCGAT 1 cut(s) 1126
BsiHKAI GWGCWC 2 cut(s) 552, 889
BsiSI CCGG 2 cut(s) 135, 689
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 4 cut(s) 683, 732, 929, 1084
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 2 cut(s) 1002, 1077
Bsp1286I GDGCHC 3 cut(s) 552, 782, 889
Bsp143I GATC 2 cut(s) 448, 1123
BspACI CCGC 2 cut(s) 267, 1085
BspANI GGCC 2 cut(s) 1002, 1077
BspCNI CTCAG 3 cut(s) 161, 538, 740
BspDI ATCGAT 1 cut(s) 1126
BspLI GGNNCC 4 cut(s) 133, 377, 585, 781
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 1 cut(s) 456
BspT107I GGYRCC 2 cut(s) 131, 779
BsrDI GCAATG 3 cut(s) 487, 517, 602
BsrI ACTGG 2 cut(s) 125, 380
BssMI GATC 2 cut(s) 448, 1123
Bst2UI CCWGG 1 cut(s) 979
Bst4CI ACNGT 6 cut(s) 456, 686, 789, 803, 899, 967
BstC8I GCNNGC 4 cut(s) 303, 520, 723, 1075
BstDEI CTNAG 4 cut(s) 148, 546, 668, 727
BstEII GGTNACC 1 cut(s) 902
BstF5I GGATG 3 cut(s) 124, 181, 1137
BstKTI GATC 2 cut(s) 451, 1126
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 2 cut(s) 448, 1123
BstMWI GCNNNNNNNGC 2 cut(s) 220, 524
BstNI CCWGG 1 cut(s) 979
BstNSI RCATGY 3 cut(s) 522, 721, 916
BstPAI GACNNNNGTC 1 cut(s) 1055
BstPI GGTNACC 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 977
BstSFI CTRYAG 2 cut(s) 609, 1008
BstSLI GKGCMC 1 cut(s) 782
BstV1I GCAGC 2 cut(s) 451, 1099
Bsu15I ATCGAT 1 cut(s) 1126
BsuI GTATCC 2 cut(s) 131, 1007
BsuRI GGCC 2 cut(s) 1002, 1077
BsuTUI ATCGAT 1 cut(s) 1126
BtsCI GGATG 3 cut(s) 124, 181, 1137
BtsIMutI CAGTG 1 cut(s) 904
Cac8I GCNNGC 4 cut(s) 303, 520, 723, 1075
CaiI CAGNNNCTG 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 20, 686
ClaI ATCGAT 1 cut(s) 1126
CpoI CGGWCCG 1 cut(s) 686
Csp6I GTAC 3 cut(s) 572, 799, 933
CspI CGGWCCG 1 cut(s) 686
CviAII CATG 8 cut(s) 87, 298, 519, 718, 908, 913, 987, 1117
CviQI GTAC 3 cut(s) 572, 799, 933
DdeI CTNAG 4 cut(s) 148, 546, 668, 727
DpnI GATC 2 cut(s) 450, 1125
DpnII GATC 2 cut(s) 448, 1123
EaeI YGGCCR 1 cut(s) 1000
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 1 cut(s) 552
Eco47I GGWCC 2 cut(s) 20, 686
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 902
EcoICRI GAGCTC 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 902
EcoRII CCWGG 1 cut(s) 977
EcoT22I ATGCAT 4 cut(s) 88, 520, 524, 604
EcoT38I GRGCYC 1 cut(s) 552
FaeI CATG 8 cut(s) 90, 301, 522, 721, 911, 916, 990, 1120
FalI AAGNNNNNCTT 4 cut(s) 403, 435, 747, 779
FaqI GGGAC 1 cut(s) 111
FatI CATG 8 cut(s) 86, 297, 518, 717, 907, 912, 986, 1116
Fnu4HI GCNGC 3 cut(s) 465, 1086, 1113
FokI GGATG 3 cut(s) 131, 188, 1144
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 3 cut(s) 465, 1086, 1113
FspBI CTAG 1 cut(s) 224
GluI GCNGC 3 cut(s) 465, 1086, 1113
GsuI CTGGAG 1 cut(s) 1000
HaeIII GGCC 2 cut(s) 1002, 1077
HapII CCGG 2 cut(s) 135, 689
Hin1II CATG 8 cut(s) 90, 301, 522, 721, 911, 916, 990, 1120
HinfI GANTC 7 cut(s) 99, 272, 352, 389, 503, 952, 974
HpaII CCGG 2 cut(s) 135, 689
HphI GGTGA 4 cut(s) 281, 544, 666, 914
Hpy166II GTNNAC 5 cut(s) 574, 665, 674, 935, 970
Hpy188I TCNGA 6 cut(s) 151, 448, 547, 773, 891, 957
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 5 cut(s) 574, 665, 674, 935, 970
HpyAV CCTTC 2 cut(s) 768, 890
HpyCH4III ACNGT 6 cut(s) 456, 686, 789, 803, 899, 967
HpyCH4IV ACGT 1 cut(s) 1052
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 524
HpyF3I CTNAG 4 cut(s) 148, 546, 668, 727
HpySE526I ACGT 1 cut(s) 1052
Hsp92II CATG 8 cut(s) 90, 301, 522, 721, 911, 916, 990, 1120
Kzo9I GATC 2 cut(s) 448, 1123
Lsp1109I GCAGC 2 cut(s) 451, 1099
LweI GCATC 4 cut(s) 109, 505, 526, 748
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 1052
MaeIII GTNAC 6 cut(s) 269, 382, 415, 902, 1057, 1136
MalI GATC 2 cut(s) 450, 1125
MboI GATC 2 cut(s) 448, 1123
MfeI CAATTG 1 cut(s) 993
MhlI GDGCHC 3 cut(s) 552, 782, 889
MlsI TGGCCA 1 cut(s) 1002
MluCI AATT 9 cut(s) 185, 198, 206, 315, 565, 858, 918, 958, 993
MluNI TGGCCA 1 cut(s) 1002
MlyI GAGTC 4 cut(s) 93, 266, 946, 983
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 7 cut(s) 220, 653, 736, 864, 933, 975, 1030
Mox20I TGGCCA 1 cut(s) 1002
Mph1103I ATGCAT 4 cut(s) 88, 520, 524, 604
MscI TGGCCA 1 cut(s) 1002
MseI TTAA 1 cut(s) 1028
MslI CAYNNNNRTG 3 cut(s) 401, 697, 940
Msp20I TGGCCA 1 cut(s) 1002
MspI CCGG 2 cut(s) 135, 689
MspR9I CCNGG 1 cut(s) 979
MunI CAATTG 1 cut(s) 993
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 1 cut(s) 979
MwoI GCNNNNNNNGC 2 cut(s) 220, 524
NdeII GATC 2 cut(s) 448, 1123
NlaIII CATG 8 cut(s) 90, 301, 522, 721, 911, 916, 990, 1120
NlaIV GGNNCC 4 cut(s) 133, 377, 585, 781
NmuCI GTSAC 3 cut(s) 269, 902, 1057
NsiI ATGCAT 4 cut(s) 88, 520, 524, 604
NspI RCATGY 3 cut(s) 522, 721, 916
OliI CACNNNNGTG 1 cut(s) 697
PaeI GCATGC 1 cut(s) 522
PciI ACATGT 1 cut(s) 912
PctI GAATGC 1 cut(s) 412
PfeI GAWTC 3 cut(s) 352, 389, 503
PflFI GACNNNGTC 1 cut(s) 988
PfoI TCCNGGA 1 cut(s) 977
PkrI GCNGC 3 cut(s) 466, 1087, 1114
PleI GAGTC 4 cut(s) 93, 266, 946, 982
PpsI GAGTC 4 cut(s) 93, 266, 946, 982
PscI ACATGT 1 cut(s) 912
PshAI GACNNNNGTC 1 cut(s) 1055
PsiI TTATAA 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 977
PspEI GGTNACC 1 cut(s) 902
PspGI CCWGG 1 cut(s) 977
PspN4I GGNNCC 4 cut(s) 133, 377, 585, 781
PspPI GGNCC 2 cut(s) 20, 686
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 1 cut(s) 386
PsyI GACNNNGTC 1 cut(s) 988
RsaI GTAC 3 cut(s) 573, 800, 934
RsaNI GTAC 3 cut(s) 572, 799, 933
RseI CAYNNNNRTG 3 cut(s) 401, 697, 940
Rsr2I CGGWCCG 1 cut(s) 686
RsrII CGGWCCG 1 cut(s) 686
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 1028
SatI GCNGC 3 cut(s) 465, 1086, 1113
Sau3AI GATC 2 cut(s) 448, 1123
Sau96I GGNCC 2 cut(s) 20, 686
ScaI AGTACT 1 cut(s) 800
SchI GAGTC 4 cut(s) 93, 266, 946, 983
ScrFI CCNGG 1 cut(s) 979
SduI GDGCHC 3 cut(s) 552, 782, 889
SfaNI GCATC 4 cut(s) 109, 505, 526, 748
SfcI CTRYAG 2 cut(s) 609, 1008
SinI GGWCC 2 cut(s) 20, 686
SmiMI CAYNNNNRTG 3 cut(s) 401, 697, 940
SphI GCATGC 1 cut(s) 522
Sse9I AATT 9 cut(s) 185, 198, 206, 315, 565, 858, 918, 958, 993
SsiI CCGC 2 cut(s) 267, 1085
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 977
TaaI ACNGT 6 cut(s) 456, 686, 789, 803, 899, 967
TaiI ACGT 1 cut(s) 1055
TaqI TCGA 2 cut(s) 703, 1126
TasI AATT 9 cut(s) 185, 198, 206, 315, 565, 858, 918, 958, 993
TatI WGTACW 1 cut(s) 798
TauI GCSGC 1 cut(s) 1088
TfiI GAWTC 3 cut(s) 352, 389, 503
Tru1I TTAA 1 cut(s) 1028
Tru9I TTAA 1 cut(s) 1028
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 3 cut(s) 269, 902, 1057
TseI GCWGC 2 cut(s) 464, 1112
Tsp45I GTSAC 3 cut(s) 269, 902, 1057
TspDTI ATGAA 4 cut(s) 219, 342, 365, 419
TspRI CASTG 1 cut(s) 904
Tth111I GACNNNGTC 1 cut(s) 988
VpaK11BI GGWCC 2 cut(s) 20, 686
XapI RAATTY 6 cut(s) 185, 198, 206, 565, 858, 958
XceI RCATGY 3 cut(s) 522, 721, 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 761
XspI CTAG 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 800
Zsp2I ATGCAT 4 cut(s) 88, 520, 524, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.