RLG00000009369

serine carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000839
Physical Location & Seq
Forward (+)
51736505 .. 51737594
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009369

Sequence Viewer

Length: 531 bp
ATGTGTCAGGCTCGTAGATACCTCAAAGACTTGTCCAAAGGTTTACTAAGTTCACCACCTAACGGTCCTGCACTTTGGTGTCGAAGTTATAATCACATGCTCGCCTCAGTTTGGGCAAACAATAAAGGTGTCCAAGATGCTCTTGGTGTCCGAAGGGGCACCAAACACTTTTGGCAGTACTGTAATACCACATTGGCTTACACTAAAGTTGCCACAAGTGTAGTGAGTTATCATCAAATTCTCTCAAAGAGAGGTGACCTTCGTGCCCTGATATACAGTGGTGACCATGACATGTCAATTCCTCATATTGGTACACAAGAATGGATAAAGACTCTGAATTTGACTGTGGACGAGTCCTGGAGGACATGGTCAATTGATGGCCAAACTGCAGGATACACAAAGAAGTTAATCAATGAGGTTTTCAGTTTGACGTTCGTCACTATAAAGGGTGCAGGCCACTTTGCGGCAGAGTATAAAGTCAAGGAATGTGCCGCCATGATTGATCGATGGATGGGTTACTTCCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

177

Amino Acids

19.98

Weight (kDa)

9.39

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 28 - 171 2.2e-32 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 2 cut(s) 464, 492
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 2 cut(s) 237, 337
AfaI GTAC 2 cut(s) 179, 313
AfiI CCNNNNNNNGG 4 cut(s) 62, 111, 308, 463
AflIII ACRYGT 1 cut(s) 291
AjnI CCWGG 1 cut(s) 356
AleI CACNNNNGTG 1 cut(s) 76
AoxI GGCC 2 cut(s) 379, 454
ApoI RAATTY 2 cut(s) 237, 337
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 3 cut(s) 45, 266, 293
AvaII GGWCC 1 cut(s) 65
BaeGI GKGCMC 2 cut(s) 161, 268
BalI TGGCCA 1 cut(s) 381
BanI GGYRCC 1 cut(s) 158
BccI CCATC 3 cut(s) 371, 501, 505
BciT130I CCWGG 1 cut(s) 358
BciVI GTATCC 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 387
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 2 cut(s) 465, 492
BlsI GCNGC 2 cut(s) 466, 493
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 1 cut(s) 127
BoxI GACNNNNGTC 1 cut(s) 434
BpmI CTGGAG 1 cut(s) 379
Bsa29I ATCGAT 1 cut(s) 505
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 111, 308, 463
BseBI CCWGG 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 505
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 4 cut(s) 62, 111, 308, 463
BseMII CTCAG 1 cut(s) 120
BseSI GKGCMC 2 cut(s) 161, 268
BsgI GTGCAG 2 cut(s) 54, 471
BshFI GGCC 2 cut(s) 381, 456
BshNI GGYRCC 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 505
BslI CCNNNNNNNGG 4 cut(s) 62, 111, 308, 463
BsnI GGCC 2 cut(s) 381, 456
Bsp1286I GDGCHC 2 cut(s) 161, 268
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 2 cut(s) 464, 492
BspANI GGCC 2 cut(s) 381, 456
BspCNI CTCAG 1 cut(s) 119
BspDI ATCGAT 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 160
BspMAI CTGCAG 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 158
BssMI GATC 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 4 cut(s) 65, 182, 278, 346
BstC8I GCNNGC 2 cut(s) 102, 454
BstDEI CTNAG 2 cut(s) 47, 106
BstEII GGTNACC 2 cut(s) 254, 281
BstF5I GGATG 1 cut(s) 516
BstKTI GATC 1 cut(s) 505
BstMBI GATC 1 cut(s) 502
BstNI CCWGG 1 cut(s) 358
BstNSI RCATGY 2 cut(s) 100, 295
BstPAI GACNNNNGTC 1 cut(s) 434
BstPI GGTNACC 2 cut(s) 254, 281
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 2 cut(s) 161, 268
Bsu15I ATCGAT 1 cut(s) 505
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 2 cut(s) 381, 456
BsuTUI ATCGAT 1 cut(s) 505
BtsCI GGATG 1 cut(s) 516
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 2 cut(s) 102, 454
Cfr13I GGNCC 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 505
Csp6I GTAC 2 cut(s) 178, 312
CviAII CATG 5 cut(s) 97, 287, 292, 366, 496
CviJI RGCY 4 cut(s) 11, 197, 381, 456
CviKI_1 RGCY 4 cut(s) 11, 197, 381, 456
CviQI GTAC 2 cut(s) 178, 312
DdeI CTNAG 2 cut(s) 47, 106
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 65
Eco91I GGTNACC 2 cut(s) 254, 281
EcoO65I GGTNACC 2 cut(s) 254, 281
EcoRII CCWGG 1 cut(s) 356
FaeI CATG 5 cut(s) 100, 290, 295, 369, 499
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 5 cut(s) 96, 286, 291, 365, 495
Fnu4HI GCNGC 2 cut(s) 465, 492
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 2 cut(s) 465, 492
GluI GCNGC 2 cut(s) 465, 492
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 2 cut(s) 381, 456
Hin1II CATG 5 cut(s) 100, 290, 295, 369, 499
HinfI GANTC 2 cut(s) 331, 353
HphI GGTGA 3 cut(s) 45, 266, 293
Hpy166II GTNNAC 4 cut(s) 44, 53, 314, 349
Hpy188I TCNGA 2 cut(s) 152, 336
Hpy8I GTNNAC 4 cut(s) 44, 53, 314, 349
HpyAV CCTTC 2 cut(s) 147, 269
HpyCH4III ACNGT 4 cut(s) 65, 182, 278, 346
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 3 cut(s) 71, 389, 452
HpyF3I CTNAG 2 cut(s) 47, 106
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 5 cut(s) 100, 290, 295, 369, 499
Kzo9I GATC 1 cut(s) 502
LpnPI CCDG 6 cut(s) 81, 281, 343, 370, 375, 438
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 4 cut(s) 254, 281, 436, 515
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 161, 268
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 4 cut(s) 237, 297, 337, 372
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 2 cut(s) 325, 362
MnlI CCTC 6 cut(s) 32, 115, 245, 312, 354, 409
Mox20I TGGCCA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 381
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 2 cut(s) 76, 319
Msp20I TGGCCA 1 cut(s) 381
MspR9I CCNGG 1 cut(s) 358
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 358
NdeII GATC 1 cut(s) 502
NlaIII CATG 5 cut(s) 100, 290, 295, 369, 499
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 3 cut(s) 254, 281, 436
NspI RCATGY 2 cut(s) 100, 295
OliI CACNNNNGTG 1 cut(s) 76
PciI ACATGT 1 cut(s) 291
PflFI GACNNNGTC 1 cut(s) 367
PfoI TCCNGGA 1 cut(s) 356
PkrI GCNGC 2 cut(s) 466, 493
PleI GAGTC 2 cut(s) 325, 361
PpsI GAGTC 2 cut(s) 325, 361
PscI ACATGT 1 cut(s) 291
PshAI GACNNNNGTC 1 cut(s) 434
PsiI TTATAA 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 356
PspEI GGTNACC 2 cut(s) 254, 281
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 391
PsyI GACNNNGTC 1 cut(s) 367
RsaI GTAC 2 cut(s) 179, 313
RsaNI GTAC 2 cut(s) 178, 312
RseI CAYNNNNRTG 2 cut(s) 76, 319
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 2 cut(s) 465, 492
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 1 cut(s) 65
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 2 cut(s) 325, 362
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 2 cut(s) 161, 268
SetI ASST 8 cut(s) 24, 43, 61, 130, 256, 261, 420, 434
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 1 cut(s) 65
SmiMI CAYNNNNRTG 2 cut(s) 76, 319
Sse9I AATT 4 cut(s) 237, 297, 337, 372
SsiI CCGC 2 cut(s) 464, 492
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 4 cut(s) 65, 182, 278, 346
TaiI ACGT 1 cut(s) 434
TaqI TCGA 2 cut(s) 82, 505
TasI AATT 4 cut(s) 237, 297, 337, 372
TatI WGTACW 1 cut(s) 177
TauI GCSGC 2 cut(s) 467, 494
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 3 cut(s) 254, 281, 436
Tsp45I GTSAC 3 cut(s) 254, 281, 436
TspRI CASTG 1 cut(s) 283
Tth111I GACNNNGTC 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 2 cut(s) 237, 337
XceI RCATGY 2 cut(s) 100, 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.