Rh5BG271500

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001427
Physical Location & Seq
Forward (+)
34042762 .. 34043334
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG271500.1

Sequence Viewer

Length: 573 bp
ATGGGGAAGCCTCAAGGTTCTTGCTTGCTGACTCTATACAGGCTCTATATAGGAAAAAGAGCCTCACCATCACGAGAATTGATCGGAAGAGTCGAACTATCCGGATCAACCAGGTTTGGGTCTCGCACCCGGATCTGTTTGTGGAAGGATCCTTTTCGATTCAAGGTGTTCTTGGCCCCTTCACGACGTTCTTGGCCCGTTCTTGAAGATGAGAGAAATGTGAGCTCTGTGATGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCAATCTTTGCATGAGAAAATTGTGAGGTTTCACATTGTGCCTCAGAGGTTTACACACAGGGAGCTTTTGGCTTTGCCTGCGAGGACTCTACTCAGAACTATGGTTCATGATGATCAGCCTCTGGGAGTCACTGGGTTTATGAGTTTCATGCCGGAATTGGTCCTCAATGGAGTGAGGATCATGGCGCTCAACATCTATTCTTCGAACAACTTGGTTGTCCATGGGATTTCCCGAGCTTTCGAGGTGAATGATCTGCCTAATACCCAATCAAGAGTAGATGTACTTCTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

190

Amino Acids

21.75

Weight (kDa)

10.37

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 101
AclWI GGATC 5 cut(s) 112, 140, 143, 156, 464
AdeI CACNNNGTG 1 cut(s) 316
AfaI GTAC 1 cut(s) 561
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 2 cut(s) 163, 206
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 5 cut(s) 225, 259, 266, 343, 515
AluI AGCT 5 cut(s) 225, 259, 266, 343, 515
Alw21I GWGCWC 2 cut(s) 227, 268
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 5 cut(s) 112, 140, 143, 156, 464
AlwNI CAGNNNCTG 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 510
Aor13HI TCCGGA 1 cut(s) 101
AoxI GGCC 2 cut(s) 174, 194
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 3 cut(s) 175, 195, 439
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 57, 535
AsuII TTCGAA 1 cut(s) 482
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 1 cut(s) 439
BamHI GGATCC 1 cut(s) 148
BanII GRGCYC 2 cut(s) 227, 268
BarI GAAGNNNNNNTAC 1 cut(s) 546
BauI CACGAG 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 227, 268
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 112
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 467
Bme1390I CCNGG 2 cut(s) 112, 130
Bme18I GGWCC 1 cut(s) 439
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 3 cut(s) 175, 195, 439
BmiI GGNNCC 2 cut(s) 150, 177
BmrFI CCNGG 2 cut(s) 112, 130
BmrI ACTGGG 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 482
BpuMI CCSGG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 499
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 415
BseAI TCCGGA 1 cut(s) 101
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 335, 385
BseNI ACTGG 1 cut(s) 415
BshFI GGCC 2 cut(s) 176, 196
BsiHKAI GWGCWC 2 cut(s) 227, 268
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 3 cut(s) 102, 130, 431
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 126
BsnI GGCC 2 cut(s) 176, 196
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 510
Bsp119I TTCGAA 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 227, 268
Bsp13I TCCGGA 1 cut(s) 101
Bsp143I GATC 7 cut(s) 81, 104, 132, 148, 391, 456, 529
Bsp19I CCATGG 1 cut(s) 499
BspANI GGCC 2 cut(s) 176, 196
BspCNI CTCAG 2 cut(s) 334, 384
BspEI TCCGGA 1 cut(s) 101
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 150, 177
BspPI GGATC 5 cut(s) 112, 140, 143, 156, 464
BspT104I TTCGAA 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 7 cut(s) 81, 104, 132, 148, 391, 456, 529
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 499
Bst2BI CACGAG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 26, 357
BstDEI CTNAG 2 cut(s) 321, 371
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 467
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 7 cut(s) 84, 107, 135, 151, 394, 459, 532
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 7 cut(s) 81, 104, 132, 148, 391, 456, 529
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 110, 128
BstX2I RGATCY 2 cut(s) 132, 148
BstYI RGATCY 2 cut(s) 132, 148
BsuRI GGCC 2 cut(s) 176, 196
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 26, 357
CaiI CAGNNNCTG 1 cut(s) 400
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 3 cut(s) 175, 195, 439
CsiI ACCWGGT 1 cut(s) 110
Csp6I GTAC 1 cut(s) 560
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviAII CATG 5 cut(s) 290, 386, 427, 460, 500
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 2 cut(s) 321, 371
DpnI GATC 7 cut(s) 83, 106, 134, 150, 393, 458, 531
DpnII GATC 7 cut(s) 81, 104, 132, 148, 391, 456, 529
DraIII CACNNNGTG 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Ecl136II GAGCTC 2 cut(s) 225, 266
Eco130I CCWWGG 1 cut(s) 499
Eco24I GRGCYC 2 cut(s) 227, 268
Eco31I GGTCTC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 439
Eco53kI GAGCTC 2 cut(s) 225, 266
Eco88I CYCGRG 1 cut(s) 510
EcoICRI GAGCTC 2 cut(s) 225, 266
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 227, 268
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 5 cut(s) 293, 389, 430, 463, 503
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 5 cut(s) 289, 385, 426, 459, 499
FbaI TGATCA 1 cut(s) 391
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 2 cut(s) 227, 268
GlaI GCGC 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 467
HaeIII GGCC 2 cut(s) 176, 196
HapII CCGG 3 cut(s) 102, 130, 431
HhaI GCGC 1 cut(s) 466
Hin1II CATG 5 cut(s) 293, 389, 430, 463, 503
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 5 cut(s) 31, 90, 159, 364, 405
HpaII CCGG 3 cut(s) 102, 130, 431
HphI GGTGA 2 cut(s) 57, 535
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 3 cut(s) 86, 324, 374
Hpy188III TCNNGA 8 cut(s) 72, 102, 183, 203, 386, 510, 549, 566
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 2 cut(s) 139, 189
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 321, 371
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 5 cut(s) 293, 389, 430, 463, 503
HspAI GCGC 1 cut(s) 464
Kpn2I TCCGGA 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 7 cut(s) 81, 104, 132, 148, 391, 456, 529
LmnI GCTCC 3 cut(s) 256, 263, 340
MabI ACCWGGT 1 cut(s) 110
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 406
MalI GATC 7 cut(s) 83, 106, 134, 150, 393, 458, 531
MboI GATC 7 cut(s) 81, 104, 132, 148, 391, 456, 529
MboII GAAGA 3 cut(s) 99, 218, 471
MflI RGATCY 2 cut(s) 132, 148
MhlI GDGCHC 2 cut(s) 227, 268
MluCI AATT 3 cut(s) 77, 297, 434
MlyI GAGTC 4 cut(s) 25, 99, 358, 414
MroI TCCGGA 1 cut(s) 101
MspI CCGG 3 cut(s) 102, 130, 431
MspR9I CCNGG 2 cut(s) 112, 130
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 356
NciI CCSGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 499
NdeII GATC 7 cut(s) 81, 104, 132, 148, 391, 456, 529
NlaIII CATG 5 cut(s) 293, 389, 430, 463, 503
NlaIV GGNNCC 2 cut(s) 150, 177
NmuCI GTSAC 1 cut(s) 406
NspV TTCGAA 1 cut(s) 482
PagI TCATGA 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 159
PleI GAGTC 4 cut(s) 25, 98, 358, 413
PpsI GAGTC 4 cut(s) 25, 98, 358, 413
Psp124BI GAGCTC 2 cut(s) 227, 268
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 150, 177
PspPI GGNCC 3 cut(s) 175, 195, 439
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 2 cut(s) 132, 148
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
SacI GAGCTC 2 cut(s) 227, 268
Sau3AI GATC 7 cut(s) 81, 104, 132, 148, 391, 456, 529
Sau96I GGNCC 3 cut(s) 175, 195, 439
SchI GAGTC 4 cut(s) 25, 99, 358, 414
ScrFI CCNGG 2 cut(s) 112, 130
SduI GDGCHC 2 cut(s) 227, 268
SexAI ACCWGGT 1 cut(s) 110
SfuI TTCGAA 1 cut(s) 482
SinI GGWCC 1 cut(s) 439
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 3 cut(s) 77, 297, 434
SstI GAGCTC 2 cut(s) 227, 268
StyD4I CCNGG 2 cut(s) 110, 128
StyI CCWWGG 1 cut(s) 499
TaiI ACGT 1 cut(s) 190
TaqI TCGA 4 cut(s) 93, 157, 482, 519
TasI AATT 3 cut(s) 77, 297, 434
TatI WGTACW 1 cut(s) 559
TfiI GAWTC 1 cut(s) 159
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 374, 415
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.