Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Reverse (-)

63253699 .. 63258032

Gene Structure 4334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG457800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGAAGCCTCAAGGTTCTTGCTTGCCGACTCTGTACCGGAAAAAAAGCCTTGCGATCACGAGAATTGATCGGAAGAATCGGATGGTCCAGATCAACTGGGTTTGGGTCTCGCACCCGAATCTGTTTGTGGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCCTTCGCGGTTGTGGATCTCGATTATGACGTCATTCACGCGCCTGTGTGCGACTCCAATTTGAGTGTTGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGTGGTCGAATTGTTCGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGTTGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCTCAGAGGCTTACACACAGGGAGCTTTCGGCCTTGCCTGCGAGTACTCTGCTCAGGACTTTGGTTCATGGTGATCAGCCTCTTTCTGACTTGAGAGAGAATGCCCATGTCGGAGAGAGACAAGGAGATAGAATTGACGACGCGCCAAAGTTGGGCAGCGGTGAGGTGACGGCCGGTGGCGGCGTCGATGAAGACGATGTGGTCGCGGTGGGCTTAAGAGGAGTGTTTCTGTGGTTGCATCTCACCGATGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

244

Amino Acids

26.72

Weight (kDa)

6.87

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	677
AatII	GACGTC	1 cut(s)	198
AccII	CGCG	4 cut(s)	173, 206, 620, 683
AciI	CCGC	4 cut(s)	173, 636, 657, 683
AclWI	GGATC	3 cut(s)	132, 145, 189
AcoI	YGGCCR	1 cut(s)	648
AcyI	GRCGYC	2 cut(s)	195, 660
AdeI	CACNNNGTG	1 cut(s)	475
AfaI	GTAC	2 cut(s)	38, 523
AfiI	CCNNNNNNNGG	2 cut(s)	172, 629
AflII	CTTAAG	1 cut(s)	691
AgsI	TTSAA	2 cut(s)	256, 365
AluBI	AGCT	5 cut(s)	306, 384, 418, 425, 502
AluI	AGCT	5 cut(s)	306, 384, 418, 425, 502
Alw21I	GWGCWC	3 cut(s)	308, 386, 427
Alw26I	GTCTC	2 cut(s)	115, 589
AlwI	GGATC	3 cut(s)	132, 145, 189
Ama87I	CYCGRG	1 cut(s)	438
AoxI	GGCC	3 cut(s)	163, 507, 648
ApeKI	GCWGC	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	208, 622
AspS9I	GGNCC	2 cut(s)	88, 164
AsuHPI	GGTGA	4 cut(s)	560, 650, 655, 712
AvaI	CYCGRG	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	137
BanII	GRGCYC	3 cut(s)	308, 386, 427
BauI	CACGAG	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	3 cut(s)	308, 386, 427
BbvI	GCAGC	1 cut(s)	645
BccI	CCATC	2 cut(s)	79, 347
BceAI	ACGGC	3 cut(s)	169, 307, 663
BcgI	CGANNNNNNTGC	4 cut(s)	382, 416, 508, 542
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	2 cut(s)	115, 589
BfrI	CTTAAG	1 cut(s)	691
BglI	GCCNNNNNGGC	1 cut(s)	484
BisI	GCNGC	2 cut(s)	634, 658
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	2 cut(s)	635, 659
BmcAI	AGTACT	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	88, 164
BmiI	GGNNCC	2 cut(s)	139, 166
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	724
BmuI	ACTGGG	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	530
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	470, 589
BsaHI	GRCGYC	2 cut(s)	195, 660
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	437
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 629
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	90, 433
BseLI	CCNNNNNNNGG	2 cut(s)	172, 629
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	3 cut(s)	293, 494, 544
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	711
BseX3I	CGGCCG	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	645
Bsh1236I	CGCG	4 cut(s)	173, 206, 620, 683
Bsh1285I	CGRYCG	1 cut(s)	651
BshFI	GGCC	3 cut(s)	165, 509, 650
BsiEI	CGRYCG	1 cut(s)	651
BsiHKAI	GWGCWC	3 cut(s)	308, 386, 427
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	40, 651
BslI	CCNNNNNNNGG	2 cut(s)	172, 629
BsmAI	GTCTC	2 cut(s)	115, 589
BsmI	GAATGC	2 cut(s)	340, 583
BsnI	GGCC	3 cut(s)	165, 509, 650
Bso31I	GGTCTC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	438
Bsp1286I	GDGCHC	3 cut(s)	308, 386, 427
Bsp143I	GATC	6 cut(s)	57, 70, 93, 137, 181, 550
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	4 cut(s)	173, 636, 657, 683
BspANI	GGCC	3 cut(s)	165, 509, 650
BspCNI	CTCAG	3 cut(s)	294, 493, 543
BspFNI	CGCG	4 cut(s)	173, 206, 620, 683
BspLI	GGNNCC	2 cut(s)	139, 166
BspPI	GGATC	3 cut(s)	132, 145, 189
BspQI	GCTCTTC	1 cut(s)	260
BspTI	CTTAAG	1 cut(s)	691
BspTNI	GGTCTC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	6 cut(s)	57, 70, 93, 137, 181, 550
BssNI	GRCGYC	2 cut(s)	195, 660
BssSI	CACGAG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	2 cut(s)	195, 660
BstAFI	CTTAAG	1 cut(s)	691
BstC8I	GCNNGC	2 cut(s)	26, 516
BstDEI	CTNAG	3 cut(s)	302, 480, 530
BstF5I	GGATG	2 cut(s)	90, 433
BstFNI	CGCG	4 cut(s)	173, 206, 620, 683
BstHHI	GCGC	2 cut(s)	208, 622
BstKTI	GATC	6 cut(s)	60, 73, 96, 140, 184, 553
BstMAI	GTCTC	2 cut(s)	115, 589
BstMBI	GATC	6 cut(s)	57, 70, 93, 137, 181, 550
BstMCI	CGRYCG	1 cut(s)	651
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 484, 515
BstUI	CGCG	4 cut(s)	173, 206, 620, 683
BstV1I	GCAGC	1 cut(s)	645
BstV2I	GAAGAC	1 cut(s)	675
BstX2I	RGATCY	2 cut(s)	137, 181
BstYI	RGATCY	2 cut(s)	137, 181
BstZI	CGGCCG	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	165, 509, 650
BtsCI	GGATG	2 cut(s)	90, 433
Cac8I	GCNNGC	2 cut(s)	26, 516
CfoI	GCGC	2 cut(s)	208, 622
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	88, 164
CseI	GACGC	2 cut(s)	626, 649
Csp6I	GTAC	2 cut(s)	37, 522
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	2 cut(s)	545, 584
CviQI	GTAC	2 cut(s)	37, 522
DdeI	CTNAG	3 cut(s)	302, 480, 530
DpnI	GATC	6 cut(s)	59, 72, 95, 139, 183, 552
DpnII	GATC	6 cut(s)	57, 70, 93, 137, 181, 550
DraIII	CACNNNGTG	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	677
DseDI	GACNNNNNNGTC	1 cut(s)	677
EaeI	YGGCCR	1 cut(s)	648
EagI	CGGCCG	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	3 cut(s)	306, 384, 425
EclXI	CGGCCG	1 cut(s)	648
Eco24I	GRGCYC	3 cut(s)	308, 386, 427
Eco31I	GGTCTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	648
Eco53kI	GAGCTC	3 cut(s)	306, 384, 425
Eco88I	CYCGRG	1 cut(s)	438
EcoICRI	GAGCTC	3 cut(s)	306, 384, 425
EcoT38I	GRGCYC	3 cut(s)	308, 386, 427
FaeI	CATG	2 cut(s)	548, 587
FaiI	YATR	3 cut(s)	192, 546, 585
FatI	CATG	2 cut(s)	544, 583
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	634, 658
FokI	GGATG	2 cut(s)	97, 420
FriOI	GRGCYC	3 cut(s)	308, 386, 427
Fsp4HI	GCNGC	2 cut(s)	634, 658
GlaI	GCGC	2 cut(s)	207, 621
GluI	GCNGC	2 cut(s)	634, 658
HaeIII	GGCC	3 cut(s)	165, 509, 650
HapII	CCGG	2 cut(s)	40, 651
HgaI	GACGC	2 cut(s)	626, 649
HhaI	GCGC	2 cut(s)	208, 622
Hin1I	GRCGYC	2 cut(s)	195, 660
Hin1II	CATG	2 cut(s)	548, 587
Hin6I	GCGC	2 cut(s)	206, 620
HinP1I	GCGC	2 cut(s)	206, 620
HinfI	GANTC	7 cut(s)	31, 79, 121, 148, 218, 358, 728
HpaII	CCGG	2 cut(s)	40, 651
HphI	GGTGA	4 cut(s)	560, 650, 655, 712
Hpy188I	TCNGA	5 cut(s)	75, 84, 483, 565, 590
Hpy188III	TCNNGA	7 cut(s)	61, 91, 185, 350, 362, 532, 732
Hpy99I	CGWCG	2 cut(s)	620, 665
HpyAV	CCTTC	2 cut(s)	128, 178
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	329, 340, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 484, 515
HpyF3I	CTNAG	3 cut(s)	302, 480, 530
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	195, 660
Hsp92II	CATG	2 cut(s)	548, 587
HspAI	GCGC	2 cut(s)	206, 620
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	6 cut(s)	57, 70, 93, 137, 181, 550
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	3 cut(s)	415, 422, 499
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	1 cut(s)	724
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	388, 643
MalI	GATC	6 cut(s)	59, 72, 95, 139, 183, 552
MboI	GATC	6 cut(s)	57, 70, 93, 137, 181, 550
MboII	GAAGA	8 cut(s)	88, 268, 271, 274, 277, 377, 466, 680
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	2 cut(s)	137, 181
MhlI	GDGCHC	3 cut(s)	308, 386, 427
MluCI	AATT	5 cut(s)	66, 223, 288, 330, 609
MlyI	GAGTC	2 cut(s)	25, 212
MmeI	TCCRAC	1 cut(s)	568
MnlI	CCTC	8 cut(s)	21, 447, 456, 477, 489, 567, 634, 689
MseI	TTAA	1 cut(s)	692
MspA1I	CMGCKG	1 cut(s)	636
MspCI	CTTAAG	1 cut(s)	691
MspI	CCGG	2 cut(s)	40, 651
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	2 cut(s)	340, 583
MvnI	CGCG	4 cut(s)	173, 206, 620, 683
MwoI	GCNNNNNNNGC	3 cut(s)	162, 484, 515
NdeII	GATC	6 cut(s)	57, 70, 93, 137, 181, 550
NlaIII	CATG	2 cut(s)	548, 587
NlaIV	GGNNCC	2 cut(s)	139, 166
NmuCI	GTSAC	2 cut(s)	388, 643
PciSI	GCTCTTC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 669
PctI	GAATGC	2 cut(s)	340, 583
PfeI	GAWTC	5 cut(s)	79, 121, 148, 358, 728
PkrI	GCNGC	2 cut(s)	635, 659
PleI	GAGTC	2 cut(s)	25, 212
PpsI	GAGTC	2 cut(s)	25, 212
Psp124BI	GAGCTC	3 cut(s)	308, 386, 427
PspN4I	GGNNCC	2 cut(s)	139, 166
PspPI	GGNCC	2 cut(s)	88, 164
PsuI	RGATCY	2 cut(s)	137, 181
RsaI	GTAC	2 cut(s)	38, 523
RsaNI	GTAC	2 cut(s)	37, 522
SacI	GAGCTC	3 cut(s)	308, 386, 427
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	692
SatI	GCNGC	2 cut(s)	634, 658
Sau3AI	GATC	6 cut(s)	57, 70, 93, 137, 181, 550
Sau96I	GGNCC	2 cut(s)	88, 164
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	2 cut(s)	25, 212
SduI	GDGCHC	3 cut(s)	308, 386, 427
SetI	ASST	9 cut(s)	19, 198, 308, 386, 420, 427, 467, 504, 645
SfaNI	GCATC	1 cut(s)	724
SinI	GGWCC	1 cut(s)	88
SmlI	CTYRAG	4 cut(s)	12, 449, 568, 691
SmoI	CTYRAG	4 cut(s)	12, 449, 568, 691
Sse9I	AATT	5 cut(s)	66, 223, 288, 330, 609
SsiI	CCGC	4 cut(s)	173, 636, 657, 683
SstI	GAGCTC	3 cut(s)	308, 386, 427
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	146, 186, 286, 663
TasI	AATT	5 cut(s)	66, 223, 288, 330, 609
TatI	WGTACW	1 cut(s)	521
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	5 cut(s)	79, 121, 148, 358, 728
Tru1I	TTAA	1 cut(s)	692
Tru9I	TTAA	1 cut(s)	692
TseFI	GTSAC	2 cut(s)	388, 643
TseI	GCWGC	1 cut(s)	633
Tsp45I	GTSAC	2 cut(s)	388, 643
TspDTI	ATGAA	2 cut(s)	533, 681
TspGWI	ACGGA	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	88
ZraI	GACGTC	1 cut(s)	196
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.