Rw3G018120

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001427
Physical Location & Seq
Reverse (-)
20064820 .. 20065838
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018120.1

Sequence Viewer

Length: 945 bp
ATGGCGTCTTCTTCTTCCTACTGCACCCGCTGGCACTCCATACTCTACTCCACCATGGCTGTCATCCTCGCCGCCATCGCAATCCCCATGACCCTCAGCACCGACCCCACTACCCAAACCCCCAAATCCGCCACACCCATCAGCCACGTCATCTTTCTCAGCGCCTCAGGAACTCTCCGGGCCTTCGCCAGAACTCTTCCTCTCCTCGCTGAACTCTACCATATTCACAATCGCCGACTCCCACATCTCCAACGCCTCTCTCCTCCTCTCCTCAGAGACCTCCTCAAATACTACACCTTTCTAGTTAGGGTTTCGATCGAAGACCTTATGGAGAAGCCTCAAGGTTCTTGCTTGCCAACTCTGTACCGGAAAAAGAGCCCTGTGATCACGAGAATTGATCGGAAGAATCAGACTGTCCAGATCAACTGGGTTTGGATTCACGGCGTTCTTGGCCCCTTCGCTGCTATGGATCCCAATTATGATGTCATTCAGGCGCCTGTGTGCGAGTCCAATTCGAGTGTCGTTTCTAGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTGTTTGGTTGCTGAGCTTAAAGGGGTTTGTGCCATTTGCAATTGGGCCGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACTATTTTTGTGCCACCAAGATTTGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTATCACATTGTGCCTCAGAGGCTTACACACAGGGAGCTTTCGGCCTTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGGGTTTATGAGTTTCATGCCAGAATTGGTCTTCAATGGAGTGAGGATCGTGGCGCCTGACATCTATTCTTCAAACCCCGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

314

Amino Acids

35.24

Weight (kDa)

9.65

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 493, 910
AciI CCGC 4 cut(s) 28, 72, 129, 626
AclWI GGATC 3 cut(s) 464, 477, 911
AcyI GRCGYC 3 cut(s) 5, 494, 911
AdeI CACNNNGTG 1 cut(s) 763
AfaI GTAC 1 cut(s) 365
AgsI TTSAA 4 cut(s) 544, 653, 892, 930
AjiI CACGTC 1 cut(s) 148
AluBI AGCT 6 cut(s) 594, 672, 706, 713, 790, 940
AluI AGCT 6 cut(s) 594, 672, 706, 713, 790, 940
Alw21I GWGCWC 2 cut(s) 674, 715
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 3 cut(s) 464, 477, 911
AlwNI CAGNNNCTG 1 cut(s) 847
Ama87I CYCGRG 2 cut(s) 726, 935
AoxI GGCC 4 cut(s) 180, 451, 623, 795
ApeKI GCWGC 1 cut(s) 461
AspLEI GCGC 3 cut(s) 164, 496, 913
AspS9I GGNCC 3 cut(s) 180, 452, 623
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 848
AvaI CYCGRG 2 cut(s) 726, 935
AxyI CCTNAGG 1 cut(s) 166
BamHI GGATCC 1 cut(s) 469
BanI GGYRCC 2 cut(s) 493, 910
BanII GRGCYC 3 cut(s) 380, 674, 715
BauI CACGAG 1 cut(s) 388
BbsI GAAGAC 2 cut(s) 327, 880
Bbv12I GWGCWC 2 cut(s) 674, 715
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 448
BccI CCATC 3 cut(s) 83, 146, 635
BceAI ACGGC 1 cut(s) 457
BcgI CGANNNNNNTGC 2 cut(s) 796, 830
BclI TGATCA 2 cut(s) 384, 838
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 2 cut(s) 302, 528
BfoI RGCGCY 3 cut(s) 165, 497, 914
BglI GCCNNNNNGGC 1 cut(s) 772
BisI GCNGC 3 cut(s) 72, 462, 626
BlpI GCTNAGC 1 cut(s) 590
BlsI GCNGC 3 cut(s) 73, 463, 627
Bme1390I CCNGG 1 cut(s) 179
BmeT110I CYCGRG 2 cut(s) 726, 935
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 180, 452, 623
BmiI GGNNCC 4 cut(s) 454, 471, 495, 912
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 2 cut(s) 436, 867
BmuI ACTGGG 2 cut(s) 436, 867
BpiI GAAGAC 2 cut(s) 327, 880
BplI GAGNNNNNCTC 2 cut(s) 267, 299
Bpu10I CCTNAGC 2 cut(s) 95, 818
Bpu1102I GCTNAGC 1 cut(s) 590
BpuEI CTTGAG 2 cut(s) 324, 758
BpuMI CCSGG 1 cut(s) 179
BsaHI GRCGYC 3 cut(s) 5, 494, 911
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 54, 725
BsaWI WCCGGW 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 431, 862
Bse21I CCTNAGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 565
BseDI CCNNGG 2 cut(s) 54, 725
BseGI GGATG 2 cut(s) 63, 721
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 7 cut(s) 109, 172, 180, 286, 581, 782, 832
BseNI ACTGG 2 cut(s) 431, 862
BseRI GAGGAG 5 cut(s) 194, 252, 255, 260, 272
BseXI GCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 4 cut(s) 182, 453, 625, 797
BshNI GGYRCC 2 cut(s) 493, 910
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 2 cut(s) 674, 715
BsiHKCI CYCGRG 2 cut(s) 726, 935
BsiSI CCGG 2 cut(s) 178, 367
BsmAI GTCTC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 4 cut(s) 182, 453, 625, 797
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 2 cut(s) 726, 935
Bsp1286I GDGCHC 3 cut(s) 380, 674, 715
Bsp143I GATC 7 cut(s) 315, 384, 397, 420, 469, 838, 903
Bsp1720I GCTNAGC 1 cut(s) 590
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 4 cut(s) 28, 72, 129, 626
BspANI GGCC 4 cut(s) 182, 453, 625, 797
BspCNI CTCAG 7 cut(s) 108, 171, 179, 285, 582, 781, 831
BspLI GGNNCC 4 cut(s) 454, 471, 495, 912
BspPI GGATC 3 cut(s) 464, 477, 911
BspQI GCTCTTC 1 cut(s) 548
BspT107I GGYRCC 2 cut(s) 493, 910
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 565
BsrI ACTGG 2 cut(s) 431, 862
BssECI CCNNGG 2 cut(s) 54, 725
BssMI GATC 7 cut(s) 315, 384, 397, 420, 469, 838, 903
BssNI GRCGYC 3 cut(s) 5, 494, 911
BssSI CACGAG 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 388
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 2 cut(s) 201, 548
BstACI GRCGYC 3 cut(s) 5, 494, 911
BstC8I GCNNGC 3 cut(s) 32, 353, 804
BstDEI CTNAG 7 cut(s) 95, 158, 166, 272, 590, 768, 818
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 63, 721
BstH2I RGCGCY 3 cut(s) 165, 497, 914
BstHHI GCGC 3 cut(s) 164, 496, 913
BstKTI GATC 7 cut(s) 318, 387, 400, 423, 472, 841, 906
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 7 cut(s) 315, 384, 397, 420, 469, 838, 903
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 4 cut(s) 77, 450, 772, 803
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 2 cut(s) 327, 880
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
Bsu36I CCTNAGG 1 cut(s) 166
BsuRI GGCC 4 cut(s) 182, 453, 625, 797
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 63, 721
BtsIMutI CAGTG 1 cut(s) 855
Cac8I GCNNGC 3 cut(s) 32, 353, 804
CaiI CAGNNNCTG 1 cut(s) 847
CfoI GCGC 3 cut(s) 164, 496, 913
Cfr13I GGNCC 3 cut(s) 180, 452, 623
Csp6I GTAC 1 cut(s) 364
CviAII CATG 4 cut(s) 55, 88, 833, 874
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 7 cut(s) 95, 158, 166, 272, 590, 768, 818
DinI GGCGCC 2 cut(s) 495, 912
DpnI GATC 7 cut(s) 317, 386, 399, 422, 471, 840, 905
DpnII GATC 7 cut(s) 315, 384, 397, 420, 469, 838, 903
DraIII CACNNNGTG 1 cut(s) 763
Eam1104I CTCTTC 2 cut(s) 201, 548
EarI CTCTTC 2 cut(s) 201, 548
EciI GGCGGA 1 cut(s) 118
Ecl136II GAGCTC 2 cut(s) 672, 713
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 3 cut(s) 380, 674, 715
Eco31I GGTCTC 1 cut(s) 270
Eco53kI GAGCTC 2 cut(s) 672, 713
Eco81I CCTNAGG 1 cut(s) 166
Eco88I CYCGRG 2 cut(s) 726, 935
EcoICRI GAGCTC 2 cut(s) 672, 713
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 3 cut(s) 380, 674, 715
EgeI GGCGCC 2 cut(s) 495, 912
EheI GGCGCC 2 cut(s) 495, 912
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 4 cut(s) 58, 91, 836, 877
FatI CATG 4 cut(s) 54, 87, 832, 873
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 2 cut(s) 384, 838
Fnu4HI GCNGC 3 cut(s) 72, 462, 626
FokI GGATG 2 cut(s) 50, 708
FriOI GRGCYC 3 cut(s) 380, 674, 715
Fsp4HI GCNGC 3 cut(s) 72, 462, 626
FspBI CTAG 2 cut(s) 302, 528
GlaI GCGC 3 cut(s) 163, 495, 912
GluI GCNGC 3 cut(s) 72, 462, 626
HaeII RGCGCY 3 cut(s) 165, 497, 914
HaeIII GGCC 4 cut(s) 182, 453, 625, 797
HapII CCGG 2 cut(s) 178, 367
HhaI GCGC 3 cut(s) 164, 496, 913
Hin1I GRCGYC 3 cut(s) 5, 494, 911
Hin1II CATG 4 cut(s) 58, 91, 836, 877
Hin6I GCGC 3 cut(s) 162, 494, 911
HinP1I GCGC 3 cut(s) 162, 494, 911
HinfI GANTC 6 cut(s) 237, 406, 436, 506, 646, 811
HpaII CCGG 2 cut(s) 178, 367
HphI GGTGA 1 cut(s) 848
Hpy188I TCNGA 5 cut(s) 275, 402, 411, 576, 771
Hpy188III TCNNGA 7 cut(s) 168, 388, 418, 638, 650, 820, 848
HpyAV CCTTC 2 cut(s) 193, 466
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 24, 617
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 450, 772, 803
HpyF3I CTNAG 7 cut(s) 95, 158, 166, 272, 590, 768, 818
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 3 cut(s) 5, 494, 911
Hsp92II CATG 4 cut(s) 58, 91, 836, 877
HspAI GCGC 3 cut(s) 162, 494, 911
KasI GGCGCC 2 cut(s) 493, 910
Ksp22I TGATCA 2 cut(s) 384, 838
Kzo9I GATC 7 cut(s) 315, 384, 397, 420, 469, 838, 903
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 2 cut(s) 710, 787
Lsp1109I GCAGC 1 cut(s) 448
MaeI CTAG 2 cut(s) 302, 528
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 676, 853
MalI GATC 7 cut(s) 317, 386, 399, 422, 471, 840, 905
MboI GATC 7 cut(s) 315, 384, 397, 420, 469, 838, 903
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 3 cut(s) 380, 674, 715
MluCI AATT 5 cut(s) 393, 475, 511, 618, 881
Mly113I GGCGCC 2 cut(s) 494, 911
MlyI GAGTC 3 cut(s) 231, 515, 805
MmeI TCCRAC 2 cut(s) 274, 554
MseI TTAA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 2 cut(s) 178, 367
MspR9I CCNGG 1 cut(s) 179
MunI CAATTG 1 cut(s) 618
Mva1269I GAATGC 1 cut(s) 628
MwoI GCNNNNNNNGC 4 cut(s) 77, 450, 772, 803
NarI GGCGCC 2 cut(s) 494, 911
NciI CCSGG 1 cut(s) 179
NcoI CCATGG 1 cut(s) 54
NdeII GATC 7 cut(s) 315, 384, 397, 420, 469, 838, 903
NlaIII CATG 4 cut(s) 58, 91, 836, 877
NlaIV GGNNCC 4 cut(s) 454, 471, 495, 912
NmuCI GTSAC 2 cut(s) 676, 853
PciSI GCTCTTC 1 cut(s) 548
PctI GAATGC 1 cut(s) 628
PfeI GAWTC 3 cut(s) 406, 436, 646
PkrI GCNGC 3 cut(s) 73, 463, 627
Ple19I CGATCG 1 cut(s) 318
PleI GAGTC 3 cut(s) 231, 514, 805
PluTI GGCGCC 2 cut(s) 497, 914
PpsI GAGTC 3 cut(s) 231, 514, 805
Psp124BI GAGCTC 2 cut(s) 674, 715
PspN4I GGNNCC 4 cut(s) 454, 471, 495, 912
PspPI GGNCC 3 cut(s) 180, 452, 623
PstNI CAGNNNCTG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 469
PvuI CGATCG 1 cut(s) 318
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SacI GAGCTC 2 cut(s) 674, 715
SapI GCTCTTC 1 cut(s) 548
SaqAI TTAA 1 cut(s) 596
SatI GCNGC 3 cut(s) 72, 462, 626
Sau3AI GATC 7 cut(s) 315, 384, 397, 420, 469, 838, 903
Sau96I GGNCC 3 cut(s) 180, 452, 623
SchI GAGTC 3 cut(s) 231, 515, 805
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 3 cut(s) 380, 674, 715
SfoI GGCGCC 2 cut(s) 495, 912
SmlI CTYRAG 2 cut(s) 339, 737
SmoI CTYRAG 2 cut(s) 339, 737
Sse9I AATT 5 cut(s) 393, 475, 511, 618, 881
SsiI CCGC 4 cut(s) 28, 72, 129, 626
SspDI GGCGCC 2 cut(s) 493, 910
SspMI CTAG 2 cut(s) 302, 528
SstI GAGCTC 2 cut(s) 674, 715
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 314, 318, 515
TasI AATT 5 cut(s) 393, 475, 511, 618, 881
TauI GCSGC 2 cut(s) 74, 628
TfiI GAWTC 3 cut(s) 406, 436, 646
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TscAI CASTG 1 cut(s) 862
TseFI GTSAC 2 cut(s) 676, 853
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 2 cut(s) 676, 853
TspDTI ATGAA 2 cut(s) 821, 862
TspRI CASTG 1 cut(s) 862
XspI CTAG 2 cut(s) 302, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.