RchiOBHm_Chr6g0278031

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001427
Physical Location & Seq
Reverse (-)
40813361 .. 40814257
897 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24943

Sequence Viewer

Length: 897 bp
ATGGCCGTCATCCTCGCCGCCATCGTAATCTCTATGACCCTCCGCTCCGACCCCACTACCCAAACCCCTAAATCTGCCACACCCATCAGCCACGTCATCTCTCTCAGCGCCTCAAGAACTCTCCGGGCCTCTGGCTTCACCGTCATGGCGGCACTCCTCCAAATCTCGCCGGAGCTCTTCCGCTCCTCGCCGAACTCCACCATCTTCGCAATCGCCAACTCCCACATCTCCAACGCCTCTCTCCCTCCTCACCTCCTCAGAGACCTCCTTAAATACCACACCTCTCCAGTTAGGGTTTCGATCGAAGACCTGATGGAGAAGCCTCAAGGTTCTTGCTTGCTGACTCTGTACCAGAAAAAGAGCCTCGCGATCACGAGAATTGATCGGAAGAATCGGATGGTCCAGATCAACTGGGTTTGGGTCTCGCACCCGAATCTGTTTGTGGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCCTTCGCGGTTGTGGATCCCAATTATGACGTCATTCACGCGCCTATGTGCGACTCCAATTTGAGTGTTGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGTGGTCGAATTGTTCGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGTTGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTAAGCTCTGTGACGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCTCAGAGGCTTACACACAGGGAGCTTTCGGCCTTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGATGATCAGCCTCTTTCTGAGCCGAGAGAGAGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

298

Amino Acids

32.86

Weight (kDa)

9.85

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 510
AccBSI CCGCTC 2 cut(s) 45, 183
AccII CGCG 3 cut(s) 368, 485, 518
AciI CCGC 5 cut(s) 18, 43, 149, 181, 485
AclWI GGATC 4 cut(s) 444, 457, 488, 501
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 507
AdeI CACNNNGTG 1 cut(s) 787
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 2 cut(s) 568, 677
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 6 cut(s) 175, 618, 696, 730, 737, 814
AluI AGCT 6 cut(s) 175, 618, 696, 730, 737, 814
Alw21I GWGCWC 3 cut(s) 177, 620, 739
Alw26I GTCTC 2 cut(s) 255, 427
AlwI GGATC 4 cut(s) 444, 457, 488, 501
Ama87I CYCGRG 1 cut(s) 750
AoxI GGCC 4 cut(s) 3, 126, 475, 819
AspLEI GCGC 2 cut(s) 110, 520
AspS9I GGNCC 3 cut(s) 126, 400, 476
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 130, 242
AvaI CYCGRG 1 cut(s) 750
AvaII GGWCC 1 cut(s) 400
BamHI GGATCC 2 cut(s) 449, 493
BanII GRGCYC 3 cut(s) 177, 620, 739
BauI CACGAG 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 3 cut(s) 177, 620, 739
BccI CCATC 6 cut(s) 29, 92, 209, 307, 391, 659
BceAI ACGGC 2 cut(s) 481, 619
BcgI CGANNNNNNTGC 4 cut(s) 694, 728, 820, 854
BclI TGATCA 1 cut(s) 862
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 255, 427
BfoI RGCGCY 1 cut(s) 111
BglI GCCNNNNNGGC 1 cut(s) 796
BisI GCNGC 2 cut(s) 18, 150
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 2 cut(s) 19, 151
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 750
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 3 cut(s) 126, 400, 476
BmiI GGNNCC 3 cut(s) 451, 478, 495
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 842
Bpu1102I GCTNAGC 1 cut(s) 614
BpuEI CTTGAG 3 cut(s) 97, 309, 782
BpuMI CCSGG 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 507
BsaI GGTCTC 2 cut(s) 255, 427
BsaJI CCNNGG 1 cut(s) 749
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 287, 416
Bse3DI GCAATG 1 cut(s) 589
BseDI CCNNGG 1 cut(s) 749
BseGI GGATG 3 cut(s) 9, 402, 745
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 6 cut(s) 118, 271, 605, 806, 856, 867
BseNI ACTGG 2 cut(s) 287, 416
BseRI GAGGAG 4 cut(s) 146, 175, 237, 245
Bsh1236I CGCG 3 cut(s) 368, 485, 518
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 4 cut(s) 5, 128, 477, 821
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 3 cut(s) 177, 620, 739
BsiHKCI CYCGRG 1 cut(s) 750
BsiSI CCGG 2 cut(s) 124, 170
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 2 cut(s) 255, 427
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 4 cut(s) 5, 128, 477, 821
Bso31I GGTCTC 2 cut(s) 255, 427
BsoBI CYCGRG 1 cut(s) 750
Bsp1286I GDGCHC 3 cut(s) 177, 620, 739
Bsp143I GATC 7 cut(s) 300, 369, 382, 405, 449, 493, 862
Bsp1720I GCTNAGC 1 cut(s) 614
Bsp68I TCGCGA 1 cut(s) 368
BspACI CCGC 5 cut(s) 18, 43, 149, 181, 485
BspANI GGCC 4 cut(s) 5, 128, 477, 821
BspCNI CTCAG 6 cut(s) 117, 270, 606, 805, 855, 868
BspFNI CGCG 3 cut(s) 368, 485, 518
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 3 cut(s) 451, 478, 495
BspPI GGATC 4 cut(s) 444, 457, 488, 501
BspQI GCTCTTC 2 cut(s) 182, 572
BspTNI GGTCTC 2 cut(s) 255, 427
BsrBI CCGCTC 2 cut(s) 45, 183
BsrDI GCAATG 1 cut(s) 589
BsrI ACTGG 2 cut(s) 287, 416
BssECI CCNNGG 1 cut(s) 749
BssMI GATC 7 cut(s) 300, 369, 382, 405, 449, 493, 862
BssNI GRCGYC 1 cut(s) 507
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 182, 572
BstACI GRCGYC 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 338, 828
BstDEI CTNAG 6 cut(s) 104, 257, 614, 792, 842, 876
BstF5I GGATG 3 cut(s) 9, 402, 745
BstFNI CGCG 3 cut(s) 368, 485, 518
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 520
BstKTI GATC 7 cut(s) 303, 372, 385, 408, 452, 496, 865
BstMAI GTCTC 2 cut(s) 255, 427
BstMBI GATC 7 cut(s) 300, 369, 382, 405, 449, 493, 862
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 474, 796, 827
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 3 cut(s) 368, 485, 518
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 449, 493
BstYI RGATCY 2 cut(s) 449, 493
BsuRI GGCC 4 cut(s) 5, 128, 477, 821
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 3 cut(s) 9, 402, 745
BtuMI TCGCGA 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 338, 828
CciI TCATGA 1 cut(s) 856
CfoI GCGC 2 cut(s) 110, 520
Cfr13I GGNCC 3 cut(s) 126, 400, 476
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 2 cut(s) 145, 857
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 6 cut(s) 104, 257, 614, 792, 842, 876
DpnI GATC 7 cut(s) 302, 371, 384, 407, 451, 495, 864
DpnII GATC 7 cut(s) 300, 369, 382, 405, 449, 493, 862
DraIII CACNNNGTG 1 cut(s) 787
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 182, 572
EarI CTCTTC 2 cut(s) 182, 572
Ecl136II GAGCTC 3 cut(s) 175, 618, 737
Eco24I GRGCYC 3 cut(s) 177, 620, 739
Eco31I GGTCTC 2 cut(s) 255, 427
Eco47I GGWCC 1 cut(s) 400
Eco53kI GAGCTC 3 cut(s) 175, 618, 737
Eco88I CYCGRG 1 cut(s) 750
EcoICRI GAGCTC 3 cut(s) 175, 618, 737
EcoT38I GRGCYC 3 cut(s) 177, 620, 739
FaeI CATG 2 cut(s) 148, 860
FaiI YATR 6 cut(s) 35, 146, 504, 524, 851, 858
FatI CATG 2 cut(s) 144, 856
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 2 cut(s) 18, 150
FokI GGATG 2 cut(s) 409, 732
FriOI GRGCYC 3 cut(s) 177, 620, 739
Fsp4HI GCNGC 2 cut(s) 18, 150
GlaI GCGC 2 cut(s) 109, 519
GluI GCNGC 2 cut(s) 18, 150
GsuI CTGGAG 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 4 cut(s) 5, 128, 477, 821
HapII CCGG 2 cut(s) 124, 170
HhaI GCGC 2 cut(s) 110, 520
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 2 cut(s) 148, 860
Hin6I GCGC 2 cut(s) 108, 518
HinP1I GCGC 2 cut(s) 108, 518
HinfI GANTC 7 cut(s) 343, 391, 433, 460, 530, 670, 835
HpaII CCGG 2 cut(s) 124, 170
HphI GGTGA 2 cut(s) 130, 242
Hpy188I TCNGA 6 cut(s) 49, 260, 387, 396, 795, 877
Hpy188III TCNNGA 8 cut(s) 114, 367, 373, 403, 662, 674, 844, 857
HpyAV CCTTC 2 cut(s) 440, 490
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 2 cut(s) 93, 507
HpyCH4V TGCA 2 cut(s) 641, 652
HpyF10VI GCNNNNNNNGC 3 cut(s) 474, 796, 827
HpyF3I CTNAG 6 cut(s) 104, 257, 614, 792, 842, 876
HpySE526I ACGT 2 cut(s) 93, 507
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 2 cut(s) 148, 860
HspAI GCGC 2 cut(s) 108, 518
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 7 cut(s) 300, 369, 382, 405, 449, 493, 862
LguI GCTCTTC 2 cut(s) 182, 572
LmnI GCTCC 6 cut(s) 50, 172, 188, 727, 734, 811
MaeII ACGT 2 cut(s) 93, 507
MaeIII GTNAC 1 cut(s) 700
MalI GATC 7 cut(s) 302, 371, 384, 407, 451, 495, 864
MbiI CCGCTC 2 cut(s) 45, 183
MboI GATC 7 cut(s) 300, 369, 382, 405, 449, 493, 862
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 2 cut(s) 449, 493
MhlI GDGCHC 3 cut(s) 177, 620, 739
MluCI AATT 5 cut(s) 378, 499, 535, 600, 642
MlyI GAGTC 3 cut(s) 337, 524, 829
MmeI TCCRAC 2 cut(s) 72, 255
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 2 cut(s) 124, 170
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 652
MvnI CGCG 3 cut(s) 368, 485, 518
MwoI GCNNNNNNNGC 3 cut(s) 474, 796, 827
NciI CCSGG 1 cut(s) 125
NdeII GATC 7 cut(s) 300, 369, 382, 405, 449, 493, 862
NlaIII CATG 2 cut(s) 148, 860
NlaIV GGNNCC 3 cut(s) 451, 478, 495
NmuCI GTSAC 1 cut(s) 700
NruI TCGCGA 1 cut(s) 368
PagI TCATGA 1 cut(s) 856
PciSI GCTCTTC 2 cut(s) 182, 572
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 652
PfeI GAWTC 4 cut(s) 391, 433, 460, 670
PkrI GCNGC 2 cut(s) 19, 151
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 3 cut(s) 337, 524, 829
PpsI GAGTC 3 cut(s) 337, 524, 829
Psp124BI GAGCTC 3 cut(s) 177, 620, 739
PspN4I GGNNCC 3 cut(s) 451, 478, 495
PspPI GGNCC 3 cut(s) 126, 400, 476
PsuI RGATCY 2 cut(s) 449, 493
PvuI CGATCG 1 cut(s) 303
RruI TCGCGA 1 cut(s) 368
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 3 cut(s) 177, 620, 739
SapI GCTCTTC 2 cut(s) 182, 572
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 2 cut(s) 18, 150
Sau3AI GATC 7 cut(s) 300, 369, 382, 405, 449, 493, 862
Sau96I GGNCC 3 cut(s) 126, 400, 476
SchI GAGTC 3 cut(s) 337, 524, 829
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 3 cut(s) 177, 620, 739
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 3 cut(s) 112, 324, 761
SmoI CTYRAG 3 cut(s) 112, 324, 761
Sse9I AATT 5 cut(s) 378, 499, 535, 600, 642
SsiI CCGC 5 cut(s) 18, 43, 149, 181, 485
SstI GAGCTC 3 cut(s) 177, 620, 739
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 2 cut(s) 96, 510
TaqI TCGA 4 cut(s) 299, 303, 458, 598
TasI AATT 5 cut(s) 378, 499, 535, 600, 642
TauI GCSGC 2 cut(s) 20, 152
TfiI GAWTC 4 cut(s) 391, 433, 460, 670
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseFI GTSAC 1 cut(s) 700
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 1 cut(s) 845
TspGWI ACGGA 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 400
ZraI GACGTC 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.