Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Forward (+)

22353732 .. 22354793

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G223600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTTGTTGCACTCGTTGGCATGCAGCAGTCTACTTCACCATGGCTGTAATCTTGGCCTTCATAGCAATCTCCATGACACTGCGTTCAGAAGCCAACGATGAAACTTCACAAACCAAACCCATCAGCCACATTGTCTCACTCAACGCCTCAAGAACTCTGAGAAGAGCCGGCTTCAACATCATGGCCACTCTCCTCCAAGTCTCACCAGAACTCTTCTTTTCCTCTGCAAATGCAACCCTCTTTGCTGTCAAAGACTCCGCCATCTCCAACGCCACTCTCCCTCCCCGCCTCTTGAAAAACCTCCTCCAATACCACACCTCCCCTCTCCAGCTTTCAATGGAAGACCTTCTGAGCAAGCCTCAAGGTGCTTGCTTGCCTACCCTTTATCAGCAAAAGAGCATTGCAATCACCAAAGTTGATGAGAAAGAAAGATCGGTTGAGATCAATAATGTGTTGGTTTCACACCCAAATCTGTTTCTTGAAGGACCCATTTCAATTCATGGTGTTCTTGGCCCATTCTCTGCTTTGGATCCTCGAGATGTTTATCGGGGTTGGGATATTATTCAGTCACCTGCCTGTGACTCCAATTCAAATATGATTTCTGATGTTCCTCCTGATTTGAAGAACATGGTTGAATGGACTCGGATCATCCGATTGCTGAACTCAAATGGGTTCGTTTCGTTTGCCATTGGGCTGCACTCTGTTCTTGATGGGATTCTTGGAGATCATAAGGGTTTGAAGTCTGTGACAATTTTTGTTCCACCAAGCTTGGAGCTTGAAGCATATCCTACTCCTTTGCTTGAGAAAATTGTGAGGTTTCATGTTCTGCCTCAGAAGTTTACAAACAGAGAGCTCGAATCGTTGGCTCCGAGAACATTGCTCAGGACCCTGCTTCATGGTCAGCCTCTTGAGGTCACTGGGGCTGTGGATTTCATGAAAGGATTGGTCATTAGTGGAGTGAACATTGTGGCCCCTGATATGTTTTCTTCCAGCAAGTTCATTGTCCATGGGATTTCCCGAGCTTTGGAACTGGACGATCTGCCTAATACAGCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

354

Amino Acids

38.89

Weight (kDa)

6.8

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	583
Acc36I	ACCTGC	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	2 cut(s)	261, 289
AclWI	GGATC	3 cut(s)	527, 540, 656
AcoI	YGGCCR	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	1027
AluBI	AGCT	5 cut(s)	334, 771, 778, 856, 1025
AluI	AGCT	5 cut(s)	334, 771, 778, 856, 1025
Alw21I	GWGCWC	1 cut(s)	858
Alw26I	GTCTC	2 cut(s)	142, 208
AlwI	GGATC	3 cut(s)	527, 540, 656
Ama87I	CYCGRG	2 cut(s)	537, 1020
AoxI	GGCC	4 cut(s)	57, 186, 514, 972
ApeKI	GCWGC	2 cut(s)	26, 697
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	4 cut(s)	488, 515, 888, 973
AsuHPI	GGTGA	4 cut(s)	31, 198, 403, 564
AvaI	CYCGRG	2 cut(s)	537, 1020
AvaII	GGWCC	2 cut(s)	488, 888
BalI	TGGCCA	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	858
BbvI	GCAGC	2 cut(s)	38, 684
BccI	CCATC	3 cut(s)	131, 272, 707
BcgI	CGANNNNNNTGC	2 cut(s)	862, 896
BcoDI	GTCTC	2 cut(s)	142, 208
BfuAI	ACCTGC	1 cut(s)	583
BisI	GCNGC	2 cut(s)	27, 698
BlsI	GCNGC	2 cut(s)	28, 699
Bme18I	GGWCC	2 cut(s)	488, 888
BmeT110I	CYCGRG	2 cut(s)	537, 1020
BmgT120I	GGNCC	4 cut(s)	488, 515, 888, 973
BmiI	GGNNCC	5 cut(s)	490, 534, 870, 890, 975
BmrI	ACTGGG	1 cut(s)	930
BmuI	ACTGGG	1 cut(s)	930
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	884
BpuEI	CTTGAG	4 cut(s)	136, 348, 824, 932
BsaBI	GATNNNNATC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	42, 1009
BsaXI	ACNNNNNCTCC	4 cut(s)	268, 298, 305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	1027
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	925, 1038
Bse3DI	GCAATG	2 cut(s)	402, 878
Bse8I	GATNNNNATC	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	42, 1009
BseGI	GGATG	1 cut(s)	651
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	1027
BseMI	GCAATG	2 cut(s)	402, 878
BseMII	CTCAG	4 cut(s)	152, 344, 848, 898
BseNI	ACTGG	2 cut(s)	925, 1038
BseRI	GAGGAG	2 cut(s)	185, 296
BseXI	GCAGC	2 cut(s)	38, 684
BsgI	GTGCAG	1 cut(s)	683
BshFI	GGCC	4 cut(s)	59, 188, 516, 974
BsiHKAI	GWGCWC	1 cut(s)	858
BsiHKCI	CYCGRG	2 cut(s)	537, 1020
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	1027
BsmAI	GTCTC	2 cut(s)	142, 208
BsnI	GGCC	4 cut(s)	59, 188, 516, 974
BsoBI	CYCGRG	2 cut(s)	537, 1020
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp143I	GATC	6 cut(s)	434, 444, 532, 648, 727, 1039
Bsp19I	CCATGG	2 cut(s)	42, 1009
BspACI	CCGC	2 cut(s)	261, 289
BspANI	GGCC	4 cut(s)	59, 188, 516, 974
BspCNI	CTCAG	4 cut(s)	153, 345, 847, 897
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	5 cut(s)	490, 534, 870, 890, 975
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	3 cut(s)	527, 540, 656
BspQI	GCTCTTC	1 cut(s)	160
BsrDI	GCAATG	2 cut(s)	402, 878
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	925, 1038
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	42, 1009
BssMI	GATC	6 cut(s)	434, 444, 532, 648, 727, 1039
BssT1I	CCWWGG	2 cut(s)	42, 1009
Bst6I	CTCTTC	2 cut(s)	160, 221
BstC8I	GCNNGC	5 cut(s)	24, 172, 359, 373, 377
BstDEI	CTNAG	4 cut(s)	161, 353, 834, 884
BstDSI	CCRYGG	2 cut(s)	42, 1009
BstF5I	GGATG	1 cut(s)	651
BstKTI	GATC	6 cut(s)	437, 447, 535, 651, 730, 1042
BstMAI	GTCTC	2 cut(s)	142, 208
BstMBI	GATC	6 cut(s)	434, 444, 532, 648, 727, 1039
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	38, 684
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	4 cut(s)	59, 188, 516, 974
BtgI	CCRYGG	2 cut(s)	42, 1009
BtsCI	GGATG	1 cut(s)	651
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 918
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	5 cut(s)	24, 172, 359, 373, 377
CciI	TCATGA	1 cut(s)	936
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	4 cut(s)	488, 515, 888, 973
CspCI	CAANNNNNGTGG	2 cut(s)	753, 788
DdeI	CTNAG	4 cut(s)	161, 353, 834, 884
DpnI	GATC	6 cut(s)	436, 446, 534, 650, 729, 1041
DpnII	GATC	6 cut(s)	434, 444, 532, 648, 727, 1039
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	160, 221
EarI	CTCTTC	2 cut(s)	160, 221
EciI	GGCGGA	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	856
Eco130I	CCWWGG	2 cut(s)	42, 1009
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	2 cut(s)	488, 888
Eco53kI	GAGCTC	1 cut(s)	856
Eco88I	CYCGRG	2 cut(s)	537, 1020
EcoICRI	GAGCTC	1 cut(s)	856
EcoO109I	RGGNCCY	2 cut(s)	488, 888
EcoT14I	CCWWGG	2 cut(s)	42, 1009
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	2 cut(s)	42, 1009
FauI	CCCGC	1 cut(s)	296
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	27, 698
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	2 cut(s)	27, 698
GluI	GCNGC	2 cut(s)	27, 698
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	4 cut(s)	59, 188, 516, 974
HapII	CCGG	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	769
HinfI	GANTC	5 cut(s)	257, 584, 643, 718, 860
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	4 cut(s)	31, 198, 403, 564
Hpy166II	GTNNAC	3 cut(s)	34, 843, 964
Hpy188I	TCNGA	8 cut(s)	91, 162, 354, 607, 648, 656, 837, 873
Hpy8I	GTNNAC	3 cut(s)	34, 843, 964
HpyAV	CCTTC	3 cut(s)	70, 359, 479
HpyCH4V	TGCA	6 cut(s)	12, 26, 230, 236, 407, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	4 cut(s)	161, 353, 834, 884
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	434, 444, 532, 648, 727, 1039
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	775, 874
Lsp1109I	GCAGC	2 cut(s)	38, 684
MaeIII	GTNAC	4 cut(s)	570, 581, 748, 916
MalI	GATC	6 cut(s)	436, 446, 534, 650, 729, 1041
MboI	GATC	6 cut(s)	434, 444, 532, 648, 727, 1039
MboII	GAAGA	5 cut(s)	177, 208, 356, 637, 981
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	858
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	4 cut(s)	498, 589, 753, 810
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	3 cut(s)	251, 578, 637
MmeI	TCCRAC	1 cut(s)	294
Mox20I	TGGCCA	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	65
NaeI	GCCGGC	1 cut(s)	172
NcoI	CCATGG	2 cut(s)	42, 1009
NdeII	GATC	6 cut(s)	434, 444, 532, 648, 727, 1039
NgoMIV	GCCGGC	1 cut(s)	170
NlaIV	GGNNCC	5 cut(s)	490, 534, 870, 890, 975
NmuCI	GTSAC	4 cut(s)	570, 581, 748, 916
NspI	RCATGY	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	537
PagI	TCATGA	1 cut(s)	936
PaqCI	CACCTGC	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	2 cut(s)	652, 869
PdiI	GCCGGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	718, 860
PkrI	GCNGC	2 cut(s)	28, 699
PleI	GAGTC	3 cut(s)	251, 578, 637
PpsI	GAGTC	3 cut(s)	251, 578, 637
PpuMI	RGGWCCY	2 cut(s)	488, 888
Psp124BI	GAGCTC	1 cut(s)	858
Psp5II	RGGWCCY	2 cut(s)	488, 888
PspN4I	GGNNCC	5 cut(s)	490, 534, 870, 890, 975
PspPI	GGNCC	4 cut(s)	488, 515, 888, 973
PspPPI	RGGWCCY	2 cut(s)	488, 888
PsuI	RGATCY	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	858
SapI	GCTCTTC	1 cut(s)	160
SatI	GCNGC	2 cut(s)	27, 698
Sau3AI	GATC	6 cut(s)	434, 444, 532, 648, 727, 1039
Sau96I	GGNCC	4 cut(s)	488, 515, 888, 973
SchI	GAGTC	3 cut(s)	251, 578, 637
SduI	GDGCHC	1 cut(s)	858
Sfr274I	CTCGAG	1 cut(s)	537
SinI	GGWCC	2 cut(s)	488, 888
SlaI	CTCGAG	1 cut(s)	537
SmlI	CTYRAG	5 cut(s)	151, 363, 537, 803, 911
SmoI	CTYRAG	5 cut(s)	151, 363, 537, 803, 911
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	4 cut(s)	498, 589, 753, 810
SsiI	CCGC	2 cut(s)	261, 289
SstI	GAGCTC	1 cut(s)	858
StyI	CCWWGG	2 cut(s)	42, 1009
TaqI	TCGA	2 cut(s)	538, 858
TasI	AATT	4 cut(s)	498, 589, 753, 810
TfiI	GAWTC	2 cut(s)	718, 860
TscAI	CASTG	2 cut(s)	87, 925
TseFI	GTSAC	4 cut(s)	570, 581, 748, 916
TseI	GCWGC	2 cut(s)	26, 697
Tsp45I	GTSAC	4 cut(s)	570, 581, 748, 916
TspDTI	ATGAA	8 cut(s)	52, 117, 491, 812, 887, 925, 953, 991
TspRI	CASTG	2 cut(s)	87, 925
VpaK11BI	GGWCC	2 cut(s)	488, 888
XceI	RCATGY	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	537
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.