Rh3CG224500

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001427
Physical Location & Seq
Reverse (-)
20984466 .. 20985395
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG224500.1

Sequence Viewer

Length: 633 bp
ATGGCGTCTTCTTCTTCCTACTGCACCCGCTGGCACGCCATACTCTACTCCACCATGGCTGTCATCCTCGCCGCCATCGCAATCCCCATGACCCTCAGCACCGACCCCACTACCCAAACCCCCAAATCCGCCACACCCATCAGCCACGTCATCTTTCTCAGCGCCTCAGGAACTCTCCGGGCCTTCGGCTTCACCGTCACGGATCCATTTAGATTCACGGCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTGTTTGGTTGCTGAGCTTAAAGGGGTTTGTGCCATTTGCAATTGGGCCGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACTATTTTTGTGCCACCAAGATTTGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTATCACATTGTGCCTCAGAGGCTTACACACAGGGAGCTTTCGGCCTTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGGGTTTATGAGTTTCATGCCAGAATTGGTCTTCAATGGAGTGAGGATCGTGGCGCCTGACATCTATTCTTCAAACCCCGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

210

Amino Acids

23.25

Weight (kDa)

9.6

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 598
AciI CCGC 4 cut(s) 28, 72, 129, 314
AclWI GGATC 3 cut(s) 197, 210, 599
AcyI GRCGYC 2 cut(s) 5, 599
AdeI CACNNNGTG 1 cut(s) 451
AgsI TTSAA 4 cut(s) 232, 341, 580, 618
AjiI CACGTC 1 cut(s) 148
AluBI AGCT 6 cut(s) 282, 360, 394, 401, 478, 628
AluI AGCT 6 cut(s) 282, 360, 394, 401, 478, 628
Alw21I GWGCWC 2 cut(s) 362, 403
AlwI GGATC 3 cut(s) 197, 210, 599
AlwNI CAGNNNCTG 1 cut(s) 535
Ama87I CYCGRG 2 cut(s) 414, 623
AoxI GGCC 3 cut(s) 180, 311, 483
AspLEI GCGC 2 cut(s) 164, 601
AspS9I GGNCC 2 cut(s) 180, 311
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 184, 536
AvaI CYCGRG 2 cut(s) 414, 623
AxyI CCTNAGG 1 cut(s) 166
BamHI GGATCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 598
BanII GRGCYC 2 cut(s) 362, 403
BbsI GAAGAC 1 cut(s) 568
Bbv12I GWGCWC 2 cut(s) 362, 403
BbvCI CCTCAGC 1 cut(s) 95
BccI CCATC 3 cut(s) 83, 146, 323
BceAI ACGGC 1 cut(s) 234
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 179
BfoI RGCGCY 2 cut(s) 165, 602
BglI GCCNNNNNGGC 1 cut(s) 460
BisI GCNGC 2 cut(s) 72, 314
BlpI GCTNAGC 1 cut(s) 278
BlsI GCNGC 2 cut(s) 73, 315
Bme1390I CCNGG 1 cut(s) 179
BmeT110I CYCGRG 2 cut(s) 414, 623
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 180, 311
BmiI GGNNCC 2 cut(s) 204, 600
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 555
BpiI GAAGAC 1 cut(s) 568
Bpu10I CCTNAGC 2 cut(s) 95, 506
Bpu1102I GCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 179
BsaHI GRCGYC 2 cut(s) 5, 599
BsaJI CCNNGG 2 cut(s) 54, 413
Bse1I ACTGG 1 cut(s) 550
Bse21I CCTNAGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 54, 413
BseGI GGATG 2 cut(s) 63, 409
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 6 cut(s) 109, 172, 180, 269, 470, 520
BseNI ACTGG 1 cut(s) 550
BsgI GTGCAG 1 cut(s) 7
BshFI GGCC 3 cut(s) 182, 313, 485
BshNI GGYRCC 1 cut(s) 598
BsiHKAI GWGCWC 2 cut(s) 362, 403
BsiHKCI CYCGRG 2 cut(s) 414, 623
BsiSI CCGG 1 cut(s) 178
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 3 cut(s) 182, 313, 485
BsoBI CYCGRG 2 cut(s) 414, 623
Bsp1286I GDGCHC 2 cut(s) 362, 403
Bsp143I GATC 3 cut(s) 202, 526, 591
Bsp1720I GCTNAGC 1 cut(s) 278
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 4 cut(s) 28, 72, 129, 314
BspANI GGCC 3 cut(s) 182, 313, 485
BspCNI CTCAG 6 cut(s) 108, 171, 179, 270, 469, 519
BspLI GGNNCC 2 cut(s) 204, 600
BspPI GGATC 3 cut(s) 197, 210, 599
BspQI GCTCTTC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 598
BsrDI GCAATG 1 cut(s) 253
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 54, 413
BssMI GATC 3 cut(s) 202, 526, 591
BssNI GRCGYC 2 cut(s) 5, 599
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 2 cut(s) 5, 599
BstC8I GCNNGC 3 cut(s) 32, 36, 492
BstDEI CTNAG 6 cut(s) 95, 158, 166, 278, 456, 506
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 63, 409
BstH2I RGCGCY 2 cut(s) 165, 602
BstHHI GCGC 2 cut(s) 164, 601
BstKTI GATC 3 cut(s) 205, 529, 594
BstMBI GATC 3 cut(s) 202, 526, 591
BstMWI GCNNNNNNNGC 3 cut(s) 77, 460, 491
BstSCI CCNGG 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 568
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 166
BsuRI GGCC 3 cut(s) 182, 313, 485
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 63, 409
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 3 cut(s) 32, 36, 492
CaiI CAGNNNCTG 1 cut(s) 535
CfoI GCGC 2 cut(s) 164, 601
Cfr13I GGNCC 2 cut(s) 180, 311
CviAII CATG 4 cut(s) 55, 88, 521, 562
DdeI CTNAG 6 cut(s) 95, 158, 166, 278, 456, 506
DinI GGCGCC 1 cut(s) 600
DpnI GATC 3 cut(s) 204, 528, 593
DpnII GATC 3 cut(s) 202, 526, 591
DraIII CACNNNGTG 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 118
Ecl136II GAGCTC 2 cut(s) 360, 401
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 362, 403
Eco53kI GAGCTC 2 cut(s) 360, 401
Eco81I CCTNAGG 1 cut(s) 166
Eco88I CYCGRG 2 cut(s) 414, 623
EcoICRI GAGCTC 2 cut(s) 360, 401
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 362, 403
EgeI GGCGCC 1 cut(s) 600
EheI GGCGCC 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 4 cut(s) 58, 91, 524, 565
FaiI YATR 7 cut(s) 41, 56, 89, 515, 522, 554, 563
FatI CATG 4 cut(s) 54, 87, 520, 561
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 2 cut(s) 72, 314
FokI GGATG 2 cut(s) 50, 396
FriOI GRGCYC 2 cut(s) 362, 403
Fsp4HI GCNGC 2 cut(s) 72, 314
GlaI GCGC 2 cut(s) 163, 600
GluI GCNGC 2 cut(s) 72, 314
HaeII RGCGCY 2 cut(s) 165, 602
HaeIII GGCC 3 cut(s) 182, 313, 485
HapII CCGG 1 cut(s) 178
HhaI GCGC 2 cut(s) 164, 601
Hin1I GRCGYC 2 cut(s) 5, 599
Hin1II CATG 4 cut(s) 58, 91, 524, 565
Hin6I GCGC 2 cut(s) 162, 599
HinP1I GCGC 2 cut(s) 162, 599
HinfI GANTC 3 cut(s) 213, 334, 499
HpaII CCGG 1 cut(s) 178
HphI GGTGA 2 cut(s) 184, 536
Hpy188I TCNGA 2 cut(s) 264, 459
Hpy188III TCNNGA 5 cut(s) 168, 326, 338, 508, 536
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 24, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 460, 491
HpyF3I CTNAG 6 cut(s) 95, 158, 166, 278, 456, 506
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 2 cut(s) 5, 599
Hsp92II CATG 4 cut(s) 58, 91, 524, 565
HspAI GCGC 2 cut(s) 162, 599
KasI GGCGCC 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 3 cut(s) 202, 526, 591
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 398, 475
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 3 cut(s) 196, 364, 541
MalI GATC 3 cut(s) 204, 528, 593
MboI GATC 3 cut(s) 202, 526, 591
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 2 cut(s) 362, 403
MluCI AATT 2 cut(s) 306, 569
Mly113I GGCGCC 1 cut(s) 599
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 242
MseI TTAA 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 179
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 77, 460, 491
NarI GGCGCC 1 cut(s) 599
NciI CCSGG 1 cut(s) 179
NcoI CCATGG 1 cut(s) 54
NdeII GATC 3 cut(s) 202, 526, 591
NlaIII CATG 4 cut(s) 58, 91, 524, 565
NlaIV GGNNCC 2 cut(s) 204, 600
NmuCI GTSAC 3 cut(s) 196, 364, 541
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 213, 334
PkrI GCNGC 2 cut(s) 73, 315
PleI GAGTC 1 cut(s) 493
PluTI GGCGCC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 493
Psp124BI GAGCTC 2 cut(s) 362, 403
PspN4I GGNNCC 2 cut(s) 204, 600
PspPI GGNCC 2 cut(s) 180, 311
PstNI CAGNNNCTG 1 cut(s) 535
PsuI RGATCY 1 cut(s) 202
SacI GAGCTC 2 cut(s) 362, 403
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 2 cut(s) 72, 314
Sau3AI GATC 3 cut(s) 202, 526, 591
Sau96I GGNCC 2 cut(s) 180, 311
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 2 cut(s) 362, 403
SetI ASST 8 cut(s) 150, 284, 362, 396, 403, 443, 480, 630
SfoI GGCGCC 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 2 cut(s) 306, 569
SsiI CCGC 4 cut(s) 28, 72, 129, 314
SspDI GGCGCC 1 cut(s) 598
SstI GAGCTC 2 cut(s) 362, 403
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 150
TasI AATT 2 cut(s) 306, 569
TauI GCSGC 2 cut(s) 74, 316
TfiI GAWTC 2 cut(s) 213, 334
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 3 cut(s) 196, 364, 541
Tsp45I GTSAC 3 cut(s) 196, 364, 541
TspDTI ATGAA 2 cut(s) 509, 550
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.