Rh2BG054100

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001427
Physical Location & Seq
Forward (+)
3880291 .. 3880740
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG054100.1

Sequence Viewer

Length: 450 bp
ATGGATCCCAATTATGATGTCATTCACGCGCCTGTGTGCGAGTCCAATTCAAGTGTCGTTTCTGGTTCTGGTGGATTGAAAAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTGTTTGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGCCGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACTATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTATCACATTGTGCCTCAGAGGCTTAAACACAGGGAGCTTTCAGCCTTGCCTGCGAGGACTCTACTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCATTGGAGTGAGGATCGGGGCGCCTGACATCTATTCTTCGAACCTCGAGCTTTCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

149

Amino Acids

16.52

Weight (kDa)

9.2

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 409
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 161
AclWI GGATC 2 cut(s) 12, 410
AcyI GRCGYC 1 cut(s) 410
AdeI CACNNNGTG 1 cut(s) 298
AgsI TTSAA 3 cut(s) 51, 79, 188
AluBI AGCT 6 cut(s) 129, 207, 241, 248, 325, 439
AluI AGCT 6 cut(s) 129, 207, 241, 248, 325, 439
Alw21I GWGCWC 3 cut(s) 131, 209, 250
AlwI GGATC 2 cut(s) 12, 410
AlwNI CAGNNNCTG 1 cut(s) 382
Ama87I CYCGRG 2 cut(s) 261, 434
AoxI GGCC 1 cut(s) 158
AspLEI GCGC 2 cut(s) 31, 412
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 383
AsuII TTCGAA 1 cut(s) 428
AvaI CYCGRG 2 cut(s) 261, 434
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 409
BanII GRGCYC 3 cut(s) 131, 209, 250
Bbv12I GWGCWC 3 cut(s) 131, 209, 250
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 130
BclI TGATCA 1 cut(s) 373
BfoI RGCGCY 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 307
BisI GCNGC 1 cut(s) 161
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 162
BmeT110I CYCGRG 2 cut(s) 261, 434
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 6, 411
Bpu1102I GCTNAGC 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 3 cut(s) 116, 317, 367
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 409
BsiHKAI GWGCWC 3 cut(s) 131, 209, 250
BsiHKCI CYCGRG 2 cut(s) 261, 434
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 2 cut(s) 261, 434
Bsp119I TTCGAA 1 cut(s) 428
Bsp1286I GDGCHC 3 cut(s) 131, 209, 250
Bsp143I GATC 3 cut(s) 4, 373, 402
Bsp1720I GCTNAGC 1 cut(s) 125
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 3 cut(s) 117, 316, 366
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 6, 411
BspPI GGATC 2 cut(s) 12, 410
BspQI GCTCTTC 1 cut(s) 83
BspT104I TTCGAA 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 3 cut(s) 4, 373, 402
BssNI GRCGYC 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 3 cut(s) 125, 303, 353
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 2 cut(s) 31, 412
BstKTI GATC 3 cut(s) 7, 376, 405
BstMBI GATC 3 cut(s) 4, 373, 402
BstMWI GCNNNNNNNGC 2 cut(s) 307, 338
BstUI CGCG 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 2 cut(s) 31, 412
Cfr13I GGNCC 1 cut(s) 158
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 1 cut(s) 368
DdeI CTNAG 3 cut(s) 125, 303, 353
DinI GGCGCC 1 cut(s) 411
DpnI GATC 3 cut(s) 6, 375, 404
DpnII GATC 3 cut(s) 4, 373, 402
DraIII CACNNNGTG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 3 cut(s) 129, 207, 248
Eco24I GRGCYC 3 cut(s) 131, 209, 250
Eco53kI GAGCTC 3 cut(s) 129, 207, 248
Eco88I CYCGRG 2 cut(s) 261, 434
EcoICRI GAGCTC 3 cut(s) 129, 207, 248
EcoT38I GRGCYC 3 cut(s) 131, 209, 250
EgeI GGCGCC 1 cut(s) 411
EheI GGCGCC 1 cut(s) 411
FaeI CATG 1 cut(s) 371
FaiI YATR 3 cut(s) 15, 362, 369
FatI CATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 3 cut(s) 131, 209, 250
Fsp4HI GCNGC 1 cut(s) 161
GlaI GCGC 2 cut(s) 30, 411
GluI GCNGC 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 1 cut(s) 160
HhaI GCGC 2 cut(s) 31, 412
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 2 cut(s) 29, 410
HinP1I GCGC 2 cut(s) 29, 410
HinfI GANTC 3 cut(s) 41, 181, 346
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 111, 306
Hpy188III TCNNGA 4 cut(s) 173, 185, 355, 383
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 338
HpyF3I CTNAG 3 cut(s) 125, 303, 353
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 2 cut(s) 29, 410
KasI GGCGCC 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 4, 373, 402
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 3 cut(s) 238, 245, 322
LpnPI CCDG 8 cut(s) 45, 48, 54, 304, 340, 351, 368, 426
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 6, 375, 404
MboI GATC 3 cut(s) 4, 373, 402
MboII GAAGA 5 cut(s) 97, 100, 200, 289, 417
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 131, 209, 250
MluCI AATT 3 cut(s) 10, 46, 153
Mly113I GGCGCC 1 cut(s) 410
MlyI GAGTC 2 cut(s) 50, 340
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 9 cut(s) 270, 279, 300, 312, 336, 390, 393, 438, 443
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 395
MunI CAATTG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 307, 338
NarI GGCGCC 1 cut(s) 410
NdeII GATC 3 cut(s) 4, 373, 402
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 2 cut(s) 6, 411
NmuCI GTSAC 1 cut(s) 211
NspV TTCGAA 1 cut(s) 428
PaeR7I CTCGAG 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 83
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 2 cut(s) 49, 340
PluTI GGCGCC 1 cut(s) 413
PpsI GAGTC 2 cut(s) 49, 340
Psp124BI GAGCTC 3 cut(s) 131, 209, 250
PspN4I GGNNCC 2 cut(s) 6, 411
PspPI GGNCC 1 cut(s) 158
PspXI VCTCGAGB 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 395
SacI GAGCTC 3 cut(s) 131, 209, 250
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 4, 373, 402
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 2 cut(s) 50, 340
SduI GDGCHC 3 cut(s) 131, 209, 250
SetI ASST 9 cut(s) 131, 209, 243, 250, 290, 327, 435, 441, 449
SfoI GGCGCC 1 cut(s) 411
Sfr274I CTCGAG 1 cut(s) 434
SfuI TTCGAA 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 434
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 272, 434
SmoI CTYRAG 2 cut(s) 272, 434
Sse9I AATT 3 cut(s) 10, 46, 153
SsiI CCGC 1 cut(s) 161
SspDI GGCGCC 1 cut(s) 409
SstI GAGCTC 3 cut(s) 131, 209, 250
TaqI TCGA 3 cut(s) 428, 435, 443
TasI AATT 3 cut(s) 10, 46, 153
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 356
XhoI CTCGAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.