RLG00000028539

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001427
Physical Location & Seq
Forward (+)
24036860 .. 24037756
897 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028539

Sequence Viewer

Length: 696 bp
ATGGCCATCGACAGTGGGTCTACTCCACCATGGCCGTCATCCTCGCCGCCATCGCAATCTCCATTACCTTCCGTTCTGACCCCACCTCCCAAACCCCCAAATCCGCCACACCCATCAGCCACTATCTCTCTCAGCGCCTCAAGAATTCTCCTGGCCTTCGGCTTCACCGTCAAGGCGGCACTCCTCCAAATCTCGCAGGAGCTCTTCGTCTCCTTGCTGAACTCCACTATCTTTGTAATCACGGACTCCTACATCTCCAATGCCTCTCTCTGTCCTCACCTCCTCAGAGACCTCCTCAAATACCACACCTCTCTAGTTAGGGTTTCAATCGAAGACCTGATGGAGAAGCCTCAAGATGAGAGAAATGTGAGCTCTGTGACGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCAATCTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCTCAGAGGTTTACACATAGGGAGCTTTCGGCTTTGCCTGCAAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTTTGGGAGTCACTGGGTTTATGAGTTTCATGCCGGAATTGGTCCTCAATGGATTGAGGATCATGGCGCTCGACATCTATTCTTCGAACAACTTGGTTGTCCATGGGATTTCCCAAGCTTTCGAGGTGAATGATCTGCCTAATACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

232

Amino Acids

25.43

Weight (kDa)

6.79

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 20
AciI CCGC 3 cut(s) 47, 104, 176
AclWI GGATC 1 cut(s) 611
AcoI YGGCCR 2 cut(s) 3, 32
AcsI RAATTY 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 463
AgsI TTSAA 1 cut(s) 327
AhdI GACNNNNNGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 6 cut(s) 202, 372, 406, 413, 490, 662
AluI AGCT 6 cut(s) 202, 372, 406, 413, 490, 662
Alw21I GWGCWC 3 cut(s) 204, 374, 415
Alw26I GTCTC 2 cut(s) 214, 282
AlwI GGATC 1 cut(s) 611
AoxI GGCC 3 cut(s) 3, 32, 153
ApoI RAATTY 1 cut(s) 144
AspLEI GCGC 2 cut(s) 137, 613
AspS9I GGNCC 1 cut(s) 586
AsuHPI GGTGA 4 cut(s) 157, 269, 548, 682
AsuII TTCGAA 1 cut(s) 629
AvaII GGWCC 1 cut(s) 586
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 204, 374, 415
BbsI GAAGAC 1 cut(s) 339
Bbv12I GWGCWC 3 cut(s) 204, 374, 415
BccI CCATC 4 cut(s) 14, 58, 121, 334
BceAI ACGGC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 2 cut(s) 214, 282
BfaI CTAG 1 cut(s) 314
BfoI RGCGCY 2 cut(s) 138, 614
BisI GCNGC 2 cut(s) 47, 177
BlsI GCNGC 2 cut(s) 48, 178
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 586
BmeRI GACNNNNNGTC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 586
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 567
BmuI ACTGGG 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 339
BplI GAGNNNNNCTC 2 cut(s) 279, 311
Bpu10I CCTNAGC 1 cut(s) 518
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 3 cut(s) 124, 336, 458
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 29, 646
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bse1I ACTGG 1 cut(s) 562
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 29, 646
BseGI GGATG 2 cut(s) 38, 421
BseMII CTCAG 4 cut(s) 145, 298, 482, 532
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 3 cut(s) 173, 272, 284
BshFI GGCC 3 cut(s) 5, 34, 155
BsiHKAI GWGCWC 3 cut(s) 204, 374, 415
BsiSI CCGG 1 cut(s) 578
BsmAI GTCTC 2 cut(s) 214, 282
BsmBI CGTCTC 1 cut(s) 214
BsnI GGCC 3 cut(s) 5, 34, 155
Bso31I GGTCTC 1 cut(s) 282
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 3 cut(s) 204, 374, 415
Bsp143I GATC 3 cut(s) 538, 603, 676
Bsp19I CCATGG 2 cut(s) 29, 646
BspACI CCGC 3 cut(s) 47, 104, 176
BspANI GGCC 3 cut(s) 5, 34, 155
BspCNI CTCAG 4 cut(s) 144, 297, 481, 531
BspPI GGATC 1 cut(s) 611
BspQI GCTCTTC 1 cut(s) 209
BspT104I TTCGAA 1 cut(s) 629
BspTNI GGTCTC 1 cut(s) 282
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 29, 646
BssMI GATC 3 cut(s) 538, 603, 676
BssT1I CCWWGG 2 cut(s) 29, 646
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 14, 169
Bst6I CTCTTC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 4 cut(s) 131, 284, 468, 518
BstDSI CCRYGG 2 cut(s) 29, 646
BstF5I GGATG 2 cut(s) 38, 421
BstH2I RGCGCY 2 cut(s) 138, 614
BstHHI GCGC 2 cut(s) 137, 613
BstKTI GATC 3 cut(s) 541, 606, 679
BstMAI GTCTC 2 cut(s) 214, 282
BstMBI GATC 3 cut(s) 538, 603, 676
BstMWI GCNNNNNNNGC 2 cut(s) 52, 503
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 339
BsuRI GGCC 3 cut(s) 5, 34, 155
BtgI CCRYGG 2 cut(s) 29, 646
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 38, 421
BtsIMutI CAGTG 2 cut(s) 19, 555
Cac8I GCNNGC 1 cut(s) 504
CfoI GCGC 2 cut(s) 137, 613
Cfr13I GGNCC 1 cut(s) 586
CspCI CAANNNNNGTGG 4 cut(s) 214, 249, 381, 416
CviAII CATG 5 cut(s) 30, 533, 574, 607, 647
DdeI CTNAG 4 cut(s) 131, 284, 468, 518
DpnI GATC 3 cut(s) 540, 605, 678
DpnII GATC 3 cut(s) 538, 603, 676
DraIII CACNNNGTG 1 cut(s) 463
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 3, 32
Eam1104I CTCTTC 1 cut(s) 209
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 3 cut(s) 202, 372, 413
Eco130I CCWWGG 2 cut(s) 29, 646
Eco24I GRGCYC 3 cut(s) 204, 374, 415
Eco31I GGTCTC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 586
Eco53kI GAGCTC 3 cut(s) 202, 372, 413
EcoICRI GAGCTC 3 cut(s) 202, 372, 413
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 29, 646
EcoT38I GRGCYC 3 cut(s) 204, 374, 415
ErhI CCWWGG 2 cut(s) 29, 646
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 5 cut(s) 33, 536, 577, 610, 650
FaiI YATR 8 cut(s) 31, 483, 527, 534, 566, 575, 608, 648
FatI CATG 5 cut(s) 29, 532, 573, 606, 646
FbaI TGATCA 1 cut(s) 538
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 2 cut(s) 47, 177
FokI GGATG 2 cut(s) 25, 408
FriOI GRGCYC 3 cut(s) 204, 374, 415
Fsp4HI GCNGC 2 cut(s) 47, 177
FspBI CTAG 1 cut(s) 314
GlaI GCGC 2 cut(s) 136, 612
GluI GCNGC 2 cut(s) 47, 177
HaeII RGCGCY 2 cut(s) 138, 614
HaeIII GGCC 3 cut(s) 5, 34, 155
HapII CCGG 1 cut(s) 578
HhaI GCGC 2 cut(s) 137, 613
Hin1II CATG 5 cut(s) 33, 536, 577, 610, 650
Hin6I GCGC 2 cut(s) 135, 611
HinP1I GCGC 2 cut(s) 135, 611
HindIII AAGCTT 1 cut(s) 660
HinfI GANTC 3 cut(s) 245, 511, 552
HpaII CCGG 1 cut(s) 578
HphI GGTGA 4 cut(s) 157, 269, 548, 682
Hpy166II GTNNAC 2 cut(s) 21, 477
Hpy188I TCNGA 3 cut(s) 78, 287, 471
Hpy188III TCNNGA 3 cut(s) 141, 353, 520
Hpy8I GTNNAC 2 cut(s) 21, 477
HpyAV CCTTC 2 cut(s) 78, 166
HpyCH4III ACNGT 2 cut(s) 14, 169
HpyCH4V TGCA 1 cut(s) 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 503
HpyF3I CTNAG 4 cut(s) 131, 284, 468, 518
Hsp92II CATG 5 cut(s) 33, 536, 577, 610, 650
HspAI GCGC 2 cut(s) 135, 611
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 3 cut(s) 538, 603, 676
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 4 cut(s) 199, 403, 410, 487
LpnPI CCDG 8 cut(s) 137, 164, 182, 350, 505, 516, 543, 591
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 2 cut(s) 376, 553
MalI GATC 3 cut(s) 540, 605, 678
MboI GATC 3 cut(s) 538, 603, 676
MboII GAAGA 4 cut(s) 196, 344, 454, 618
MhlI GDGCHC 3 cut(s) 204, 374, 415
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 144, 581
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 239, 505, 561
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 578
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 52, 503
NcoI CCATGG 2 cut(s) 29, 646
NdeII GATC 3 cut(s) 538, 603, 676
NlaIII CATG 5 cut(s) 33, 536, 577, 610, 650
NmuCI GTSAC 2 cut(s) 376, 553
NspV TTCGAA 1 cut(s) 629
PciSI GCTCTTC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PkrI GCNGC 2 cut(s) 48, 178
PleI GAGTC 3 cut(s) 239, 505, 560
PpsI GAGTC 3 cut(s) 239, 505, 560
Psp124BI GAGCTC 3 cut(s) 204, 374, 415
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 1 cut(s) 586
SacI GAGCTC 3 cut(s) 204, 374, 415
SapI GCTCTTC 1 cut(s) 209
SatI GCNGC 2 cut(s) 47, 177
Sau3AI GATC 3 cut(s) 538, 603, 676
Sau96I GGNCC 1 cut(s) 586
SchI GAGTC 3 cut(s) 239, 505, 561
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 3 cut(s) 204, 374, 415
SfuI TTCGAA 1 cut(s) 629
SinI GGWCC 1 cut(s) 586
SmlI CTYRAG 3 cut(s) 139, 351, 437
SmoI CTYRAG 3 cut(s) 139, 351, 437
Sse9I AATT 2 cut(s) 144, 581
SsiI CCGC 3 cut(s) 47, 104, 176
SspMI CTAG 1 cut(s) 314
SstI GAGCTC 3 cut(s) 204, 374, 415
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 2 cut(s) 29, 646
TaaI ACNGT 2 cut(s) 14, 169
TaqI TCGA 5 cut(s) 9, 330, 615, 629, 666
TasI AATT 2 cut(s) 144, 581
TauI GCSGC 2 cut(s) 49, 179
TscAI CASTG 2 cut(s) 19, 562
TseFI GTSAC 2 cut(s) 376, 553
Tsp45I GTSAC 2 cut(s) 376, 553
TspDTI ATGAA 2 cut(s) 521, 562
TspGWI ACGGA 2 cut(s) 61, 257
TspRI CASTG 2 cut(s) 19, 562
VpaK11BI GGWCC 1 cut(s) 586
XapI RAATTY 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 20
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.