Rh4BG191400

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001427
Physical Location & Seq
Reverse (-)
33117635 .. 33118813
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG191400.1

Sequence Viewer

Length: 558 bp
ATGGAGAAGCCTCAAGGTTCTTGCTTGCCGACTCTGTACCGGAAAAAGAGCCTCGCGATCACGAGAATTGATCGGAAGAATCGGATGGTCCAGATCAACTGGGTTTGGGTCTCGCACCTGAATCTGTTTGTGGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCCTTCGCGGTTGTAGATCCCGATTATGACGTCATTCACGCGCCTGTGTGCGACTCCAATTTGAGTGTTGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGAAATGTGGAATGTGGTCGAATTGTTCGATTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGTTGCATTCTGTTCTTAATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACCATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTAAAAAAGATTATGAGATTCACCAGCCCCAGGTTCCCAAATCAAACCATGGGTTTAAGATGAATAACAAGATGACACTGCCAATGAATCTGGCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

185

Amino Acids

20.68

Weight (kDa)

9.74

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccII CGCG 3 cut(s) 56, 173, 206
AciI CCGC 1 cut(s) 173
AclWI GGATC 3 cut(s) 132, 145, 176
AcoI YGGCCR 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 172, 487
AgsI TTSAA 2 cut(s) 256, 365
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 4 cut(s) 306, 384, 418, 425
AluI AGCT 4 cut(s) 306, 384, 418, 425
Alw21I GWGCWC 3 cut(s) 308, 386, 427
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 3 cut(s) 132, 145, 176
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 2 cut(s) 163, 549
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 88, 164
AsuHPI GGTGA 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 438
AvaII GGWCC 1 cut(s) 88
BalI TGGCCA 1 cut(s) 551
BamHI GGATCC 1 cut(s) 137
BanII GRGCYC 3 cut(s) 308, 386, 427
BauI CACGAG 1 cut(s) 61
Bbv12I GWGCWC 3 cut(s) 308, 386, 427
BccI CCATC 1 cut(s) 79
BceAI ACGGC 2 cut(s) 169, 307
BciT130I CCWGG 1 cut(s) 488
BcoDI GTCTC 1 cut(s) 115
BlpI GCTNAGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 438
BmgT120I GGNCC 2 cut(s) 88, 164
BmiI GGNNCC 3 cut(s) 139, 166, 492
BmrFI CCNGG 1 cut(s) 488
BmrI ACTGGG 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
Bpu1102I GCTNAGC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 3 cut(s) 437, 486, 505
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 487
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 3 cut(s) 437, 486, 505
BseGI GGATG 2 cut(s) 90, 433
BseLI CCNNNNNNNGG 2 cut(s) 172, 487
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 104
Bsh1236I CGCG 3 cut(s) 56, 173, 206
BshFI GGCC 2 cut(s) 165, 551
BsiHKAI GWGCWC 3 cut(s) 308, 386, 427
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 172, 487
BsmAI GTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 2 cut(s) 165, 551
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 438
Bsp1286I GDGCHC 3 cut(s) 308, 386, 427
Bsp143I GATC 5 cut(s) 57, 70, 93, 137, 181
Bsp1720I GCTNAGC 1 cut(s) 302
Bsp19I CCATGG 1 cut(s) 505
Bsp68I TCGCGA 1 cut(s) 56
BspACI CCGC 1 cut(s) 173
BspANI GGCC 2 cut(s) 165, 551
BspCNI CTCAG 1 cut(s) 294
BspFNI CGCG 3 cut(s) 56, 173, 206
BspLI GGNNCC 3 cut(s) 139, 166, 492
BspPI GGATC 3 cut(s) 132, 145, 176
BspTNI GGTCTC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 437, 486, 505
BssMI GATC 5 cut(s) 57, 70, 93, 137, 181
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 302
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 2 cut(s) 90, 433
BstFNI CGCG 3 cut(s) 56, 173, 206
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 5 cut(s) 60, 73, 96, 140, 184
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 5 cut(s) 57, 70, 93, 137, 181
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 486
BstUI CGCG 3 cut(s) 56, 173, 206
BstX2I RGATCY 2 cut(s) 137, 181
BstYI RGATCY 2 cut(s) 137, 181
BsuRI GGCC 2 cut(s) 165, 551
BtgI CCRYGG 1 cut(s) 505
BtsCI GGATG 2 cut(s) 90, 433
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 1 cut(s) 533
BtuMI TCGCGA 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 26
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 88, 164
Csp6I GTAC 1 cut(s) 37
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 2 cut(s) 506, 553
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 302
DpnI GATC 5 cut(s) 59, 72, 95, 139, 183
DpnII GATC 5 cut(s) 57, 70, 93, 137, 181
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 3 cut(s) 306, 384, 425
Eco130I CCWWGG 1 cut(s) 505
Eco24I GRGCYC 3 cut(s) 308, 386, 427
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 88
Eco53kI GAGCTC 3 cut(s) 306, 384, 425
Eco88I CYCGRG 1 cut(s) 438
EcoICRI GAGCTC 3 cut(s) 306, 384, 425
EcoRII CCWGG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 505
EcoT38I GRGCYC 3 cut(s) 308, 386, 427
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 2 cut(s) 509, 556
FaiI YATR 4 cut(s) 192, 471, 507, 554
FatI CATG 2 cut(s) 505, 552
FokI GGATG 2 cut(s) 97, 420
FriOI GRGCYC 3 cut(s) 308, 386, 427
GlaI GCGC 1 cut(s) 207
HaeIII GGCC 2 cut(s) 165, 551
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 509, 556
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 8 cut(s) 31, 79, 121, 148, 218, 358, 475, 544
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 470
Hpy188I TCNGA 2 cut(s) 75, 84
Hpy188III TCNNGA 5 cut(s) 55, 61, 91, 185, 362
HpyAV CCTTC 2 cut(s) 128, 178
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 329, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 509, 556
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 5 cut(s) 57, 70, 93, 137, 181
LmnI GCTCC 2 cut(s) 415, 422
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 388
MalI GATC 5 cut(s) 59, 72, 95, 139, 183
MboI GATC 5 cut(s) 57, 70, 93, 137, 181
MboII GAAGA 7 cut(s) 88, 268, 271, 274, 277, 377, 466
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 2 cut(s) 137, 181
MhlI GDGCHC 3 cut(s) 308, 386, 427
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 4 cut(s) 66, 223, 288, 330
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 2 cut(s) 25, 212
MnlI CCTC 3 cut(s) 21, 62, 447
Mox20I TGGCCA 1 cut(s) 551
MscI TGGCCA 1 cut(s) 551
MseI TTAA 3 cut(s) 351, 459, 513
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 488
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 1 cut(s) 488
MvnI CGCG 3 cut(s) 56, 173, 206
MwoI GCNNNNNNNGC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 505
NdeII GATC 5 cut(s) 57, 70, 93, 137, 181
NlaIII CATG 2 cut(s) 509, 556
NlaIV GGNNCC 3 cut(s) 139, 166, 492
NmuCI GTSAC 1 cut(s) 388
NruI TCGCGA 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 6 cut(s) 79, 121, 148, 358, 475, 544
PleI GAGTC 2 cut(s) 25, 212
PpsI GAGTC 2 cut(s) 25, 212
Psp124BI GAGCTC 3 cut(s) 308, 386, 427
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 3 cut(s) 139, 166, 492
PspPI GGNCC 2 cut(s) 88, 164
PsuI RGATCY 2 cut(s) 137, 181
RruI TCGCGA 1 cut(s) 56
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 398
SacI GAGCTC 3 cut(s) 308, 386, 427
SaqAI TTAA 3 cut(s) 351, 459, 513
Sau3AI GATC 5 cut(s) 57, 70, 93, 137, 181
Sau96I GGNCC 2 cut(s) 88, 164
SchI GAGTC 2 cut(s) 25, 212
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 3 cut(s) 308, 386, 427
SetI ASST 8 cut(s) 19, 120, 198, 308, 386, 420, 427, 492
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 12, 449
SmoI CTYRAG 2 cut(s) 12, 449
Sse9I AATT 4 cut(s) 66, 223, 288, 330
SsiI CCGC 1 cut(s) 173
SstI GAGCTC 3 cut(s) 308, 386, 427
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 1 cut(s) 505
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 146, 286, 295
TasI AATT 4 cut(s) 66, 223, 288, 330
TfiI GAWTC 6 cut(s) 79, 121, 148, 358, 475, 544
Tru1I TTAA 3 cut(s) 351, 459, 513
Tru9I TTAA 3 cut(s) 351, 459, 513
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 533, 557
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 540
VpaK11BI GGWCC 1 cut(s) 88
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.