FvH4_6g43900

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001427
Physical Location & Seq
Forward (+)
33920726 .. 33922152
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43900.t1

Sequence Viewer

Length: 1107 bp
ATGGCGTCTTCTTCTTCTTCCTACTGCACCCGCTGGCACGCCATGTTCTACATCACCCTCGCCGTCATCCTCGCCGCCGTCTCCATCTCCACCACCCTCAGCTCCGACTCCAACTCCGACTCCGACTCCCAAACCCCCCAGTCCTCCACCGCCATCAGCCACGTCATCTCCCTCAGCGCCTCCAGAACTCTCCGCTCCTCCGGCTTCACCATCACGGCTGCTCTCCTCCAAATCTCACCGGAGCTCTTCCTCACCTCCCCGAACTCCACCATCTTCGCGATCGCCGACTCCCACATCTCCAACGCCTCTCTCCCTCCTCACCTCCTCCGCGACATCCTCAAGTACCACACCTCGCCGGTTAGGGTTTCCATCGAAGACCTGATCAACCAGCCTCAAGGCTCTTGCTTGCCGACTCTCTACCGGAACAAGACCGTCGCGATCACCAAGATTGATCGGAGGAATCGGACGGTCCAGATCAACCGGGTCCGGATCTCCCACCCGAATCTCTTCCAAGAAGGATCCGTCTCGATCCACGGCGTTCCTTCCCCGTTCGCGGCTGTGGATACCGAATATGACGTCATCCACGGACCTGAGTGCGACGCGGATTTTGGCGTCGTTTCTGGTTCTGGCGGACTGAAGAAGAAGAAGAAGAAAACGACGAGTCGTGTGGAGTGGGCTCGGATTGTTCGGCTGCTGAGCTCGAAGGGGTTTGTGTCGTTTGCGATTGGGCTGCATTCTGTTCTTGATGGGATTGTTGAAGACGAGAGAAACGTGAGCTCTGTGACGATTTTTGTGCCGCCAAGATTGGAGCTTGGAGGTGATCGTCATTATCCTCAGGCTTTGCTTGAGAAGGTTGTGAGGTTCCACATTGTGCCTCAGAGGCTTACACACAAGGAGCTTATGGCACTGCCTGCGAGGACTCTGCTCAAGACTATGGTTCATGGTGACCAGCAGCCTCTTGAAGTCACTGGGGTTGTGAGCTTCATGCCGGAATTGGTCATCGATGGCGTGAGGATCGTGGCGCCTGACACCTATGTTTCAGAGAGCGTGGTTGTCCATGGGATTTCTCGAGCTTTCGAGGTGAATGATCTGCCTAATACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

369

Amino Acids

40.23

Weight (kDa)

8.4

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 579
AccB1I GGYRCC 1 cut(s) 1021
AccBSI CCGCTC 1 cut(s) 195
AccII CGCG 5 cut(s) 278, 330, 437, 554, 602
AccIII TCCGGA 1 cut(s) 486
AciI CCGC 9 cut(s) 31, 75, 150, 193, 328, 554, 602, 630, 797
AclWI GGATC 5 cut(s) 497, 513, 523, 526, 1022
AcuI CTGAAG 1 cut(s) 656
AcyI GRCGYC 4 cut(s) 5, 576, 612, 1022
AdeI CACNNNGTG 1 cut(s) 871
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 553
AgsI TTSAA 2 cut(s) 758, 962
AjiI CACGTC 1 cut(s) 163
AluBI AGCT 8 cut(s) 102, 244, 699, 777, 811, 898, 981, 1073
AluI AGCT 8 cut(s) 102, 244, 699, 777, 811, 898, 981, 1073
Alw21I GWGCWC 3 cut(s) 246, 701, 779
Alw26I GTCTC 2 cut(s) 85, 529
AlwI GGATC 5 cut(s) 497, 513, 523, 526, 1022
Ama87I CYCGRG 1 cut(s) 1068
Aor13HI TCCGGA 1 cut(s) 486
ApeKI GCWGC 4 cut(s) 218, 691, 730, 952
ArsI GACNNNNNNTTYG 4 cut(s) 561, 590, 593, 622
AsiSI GCGATCGC 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 506
AspLEI GCGC 2 cut(s) 179, 1024
AspS9I GGNCC 3 cut(s) 469, 484, 587
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 9 cut(s) 46, 199, 228, 244, 311, 433, 830, 956, 1093
AvaI CYCGRG 1 cut(s) 1068
AvaII GGWCC 3 cut(s) 469, 484, 587
AxyI CCTNAGG 1 cut(s) 834
BamHI GGATCC 1 cut(s) 518
BanI GGYRCC 1 cut(s) 1021
BanII GRGCYC 4 cut(s) 246, 679, 701, 779
BbsI GAAGAC 2 cut(s) 381, 765
Bbv12I GWGCWC 3 cut(s) 246, 701, 779
BbvCI CCTCAGC 2 cut(s) 98, 173
BbvI GCAGC 4 cut(s) 205, 678, 717, 964
BccI CCATC 7 cut(s) 92, 161, 218, 278, 377, 740, 998
BceAI ACGGC 4 cut(s) 47, 62, 231, 550
BcgI CGANNNNNNTGC 6 cut(s) 712, 746, 775, 809, 904, 938
BciVI GTATCC 1 cut(s) 556
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 2 cut(s) 85, 529
BfoI RGCGCY 2 cut(s) 180, 1025
BfuI GTATCC 1 cut(s) 556
BglI GCCNNNNNGGC 1 cut(s) 880
BisI GCNGC 7 cut(s) 75, 219, 555, 692, 731, 797, 953
BlpI GCTNAGC 1 cut(s) 695
BlsI GCNGC 7 cut(s) 76, 220, 556, 693, 732, 798, 954
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 3 cut(s) 469, 484, 587
BmeT110I CYCGRG 1 cut(s) 1068
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 469, 484, 587
BmiI GGNNCC 4 cut(s) 485, 520, 863, 1023
BmrFI CCNGG 1 cut(s) 482
BmrI ACTGGG 2 cut(s) 133, 978
BmuI ACTGGG 2 cut(s) 133, 978
BpiI GAAGAC 2 cut(s) 381, 765
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 2 cut(s) 98, 173
Bpu1102I GCTNAGC 1 cut(s) 695
BpuEI CTTGAG 4 cut(s) 323, 378, 866, 911
BpuMI CCSGG 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 1002
BsaHI GRCGYC 4 cut(s) 5, 576, 612, 1022
BsaJI CCNNGG 3 cut(s) 532, 583, 1057
BsaWI WCCGGW 3 cut(s) 238, 420, 486
BsaXI ACNNNNNCTCC 8 cut(s) 98, 104, 110, 128, 134, 140, 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 139, 973
Bse21I CCTNAGG 1 cut(s) 834
BseAI TCCGGA 1 cut(s) 486
BseCI ATCGAT 1 cut(s) 1002
BseDI CCNNGG 3 cut(s) 532, 583, 1057
BseGI GGATG 3 cut(s) 66, 333, 579
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMII CTCAG 6 cut(s) 112, 187, 582, 686, 848, 890
BseNI ACTGG 2 cut(s) 139, 973
BseRI GAGGAG 4 cut(s) 187, 215, 306, 314
BseXI GCAGC 4 cut(s) 205, 678, 717, 964
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 5 cut(s) 278, 330, 437, 554, 602
Bsh1285I CGRYCG 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 1021
BshVI ATCGAT 1 cut(s) 1002
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 3 cut(s) 246, 701, 779
BsiHKCI CYCGRG 1 cut(s) 1068
BsiSI CCGG 7 cut(s) 201, 239, 356, 421, 481, 487, 989
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 2 cut(s) 85, 529
BsmBI CGTCTC 2 cut(s) 85, 529
BsmI GAATGC 1 cut(s) 733
BsoBI CYCGRG 1 cut(s) 1068
Bsp1286I GDGCHC 4 cut(s) 246, 679, 701, 779
Bsp13I TCCGGA 1 cut(s) 486
Bsp1720I GCTNAGC 1 cut(s) 695
Bsp19I CCATGG 1 cut(s) 1057
Bsp68I TCGCGA 2 cut(s) 278, 437
BspACI CCGC 9 cut(s) 31, 75, 150, 193, 328, 554, 602, 630, 797
BspCNI CTCAG 6 cut(s) 111, 186, 583, 687, 847, 889
BspDI ATCGAT 1 cut(s) 1002
BspEI TCCGGA 1 cut(s) 486
BspFNI CGCG 5 cut(s) 278, 330, 437, 554, 602
BspLI GGNNCC 4 cut(s) 485, 520, 863, 1023
BspPI GGATC 5 cut(s) 497, 513, 523, 526, 1022
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 1021
BsrBI CCGCTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 2 cut(s) 139, 973
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 532, 583, 1057
BssNI GRCGYC 4 cut(s) 5, 576, 612, 1022
BssT1I CCWWGG 1 cut(s) 1057
Bst4CI ACNGT 2 cut(s) 433, 469
Bst6I CTCTTC 2 cut(s) 251, 512
BstACI GRCGYC 4 cut(s) 5, 576, 612, 1022
BstAPI GCANNNNNTGC 1 cut(s) 911
BstC8I GCNNGC 4 cut(s) 35, 39, 407, 912
BstDEI CTNAG 6 cut(s) 98, 173, 591, 695, 834, 876
BstDSI CCRYGG 3 cut(s) 532, 583, 1057
BstEII GGTNACC 1 cut(s) 944
BstF5I GGATG 3 cut(s) 66, 333, 579
BstFNI CGCG 5 cut(s) 278, 330, 437, 554, 602
BstH2I RGCGCY 2 cut(s) 180, 1025
BstHHI GCGC 2 cut(s) 179, 1024
BstMAI GTCTC 2 cut(s) 85, 529
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 3 cut(s) 201, 880, 911
BstPI GGTNACC 1 cut(s) 944
BstSCI CCNGG 1 cut(s) 480
BstUI CGCG 5 cut(s) 278, 330, 437, 554, 602
BstV1I GCAGC 4 cut(s) 205, 678, 717, 964
BstV2I GAAGAC 2 cut(s) 381, 765
BstX2I RGATCY 2 cut(s) 489, 518
BstYI RGATCY 2 cut(s) 489, 518
Bsu15I ATCGAT 1 cut(s) 1002
Bsu36I CCTNAGG 1 cut(s) 834
BsuI GTATCC 1 cut(s) 556
BsuTUI ATCGAT 1 cut(s) 1002
BtgI CCRYGG 3 cut(s) 532, 583, 1057
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 3 cut(s) 66, 333, 579
BtsI GCAGTG 1 cut(s) 905
BtsIMutI CAGTG 2 cut(s) 905, 966
BtuMI TCGCGA 2 cut(s) 278, 437
Cac8I GCNNGC 4 cut(s) 35, 39, 407, 912
CfoI GCGC 2 cut(s) 179, 1024
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 469, 484, 587
ClaI ATCGAT 1 cut(s) 1002
CseI GACGC 2 cut(s) 601, 608
Csp6I GTAC 1 cut(s) 343
CviAII CATG 4 cut(s) 43, 941, 985, 1058
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 6 cut(s) 98, 173, 591, 695, 834, 876
DinI GGCGCC 1 cut(s) 1023
DraIII CACNNNGTG 1 cut(s) 871
Eam1104I CTCTTC 2 cut(s) 251, 512
EarI CTCTTC 2 cut(s) 251, 512
EciI GGCGGA 1 cut(s) 645
Ecl136II GAGCTC 3 cut(s) 244, 699, 777
Eco130I CCWWGG 1 cut(s) 1057
Eco24I GRGCYC 4 cut(s) 246, 679, 701, 779
Eco47I GGWCC 3 cut(s) 469, 484, 587
Eco53kI GAGCTC 3 cut(s) 244, 699, 777
Eco57I CTGAAG 1 cut(s) 656
Eco81I CCTNAGG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 1068
Eco91I GGTNACC 1 cut(s) 944
EcoICRI GAGCTC 3 cut(s) 244, 699, 777
EcoO65I GGTNACC 1 cut(s) 944
EcoT14I CCWWGG 1 cut(s) 1057
EcoT38I GRGCYC 4 cut(s) 246, 679, 701, 779
EgeI GGCGCC 1 cut(s) 1023
EheI GGCGCC 1 cut(s) 1023
ErhI CCWWGG 1 cut(s) 1057
Esp3I CGTCTC 2 cut(s) 85, 529
FaeI CATG 4 cut(s) 46, 944, 988, 1061
FaiI YATR 8 cut(s) 44, 573, 902, 935, 942, 986, 1035, 1059
FatI CATG 4 cut(s) 42, 940, 984, 1057
FauI CCCGC 1 cut(s) 38
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 7 cut(s) 75, 219, 555, 692, 731, 797, 953
FokI GGATG 3 cut(s) 53, 320, 566
FriOI GRGCYC 4 cut(s) 246, 679, 701, 779
Fsp4HI GCNGC 7 cut(s) 75, 219, 555, 692, 731, 797, 953
GlaI GCGC 2 cut(s) 178, 1023
GluI GCNGC 7 cut(s) 75, 219, 555, 692, 731, 797, 953
GsuI CTGGAG 1 cut(s) 166
HaeII RGCGCY 2 cut(s) 180, 1025
HapII CCGG 7 cut(s) 201, 239, 356, 421, 481, 487, 989
HgaI GACGC 2 cut(s) 601, 608
HhaI GCGC 2 cut(s) 179, 1024
Hin1I GRCGYC 4 cut(s) 5, 576, 612, 1022
Hin1II CATG 4 cut(s) 46, 944, 988, 1061
Hin6I GCGC 2 cut(s) 177, 1022
HinP1I GCGC 2 cut(s) 177, 1022
HinfI GANTC 9 cut(s) 107, 119, 125, 287, 412, 460, 502, 661, 919
HpaII CCGG 7 cut(s) 201, 239, 356, 421, 481, 487, 989
HphI GGTGA 9 cut(s) 46, 199, 228, 244, 311, 433, 830, 956, 1093
Hpy188I TCNGA 8 cut(s) 106, 118, 124, 456, 465, 681, 879, 1042
Hpy99I CGWCG 4 cut(s) 437, 602, 617, 661
HpyAV CCTTC 4 cut(s) 509, 552, 697, 844
HpyCH4III ACNGT 2 cut(s) 433, 469
HpyCH4IV ACGT 3 cut(s) 162, 576, 771
HpyCH4V TGCA 2 cut(s) 27, 733
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 880, 911
HpyF3I CTNAG 6 cut(s) 98, 173, 591, 695, 834, 876
HpySE526I ACGT 3 cut(s) 162, 576, 771
Hsp92I GRCGYC 4 cut(s) 5, 576, 612, 1022
Hsp92II CATG 4 cut(s) 46, 944, 988, 1061
HspAI GCGC 2 cut(s) 177, 1022
KasI GGCGCC 1 cut(s) 1021
Kpn2I TCCGGA 1 cut(s) 486
Ksp22I TGATCA 1 cut(s) 381
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 5 cut(s) 107, 200, 241, 808, 895
Lsp1109I GCAGC 4 cut(s) 205, 678, 717, 964
MaeII ACGT 3 cut(s) 162, 576, 771
MaeIII GTNAC 3 cut(s) 781, 944, 964
MbiI CCGCTC 1 cut(s) 195
MflI RGATCY 2 cut(s) 489, 518
MhlI GDGCHC 4 cut(s) 246, 679, 701, 779
MluCI AATT 1 cut(s) 992
Mly113I GGCGCC 1 cut(s) 1022
MlyI GAGTC 7 cut(s) 101, 113, 119, 281, 406, 670, 913
MmeI TCCRAC 5 cut(s) 129, 135, 141, 147, 324
MroI TCCGGA 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 506
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 7 cut(s) 201, 239, 356, 421, 481, 487, 989
MspR9I CCNGG 1 cut(s) 482
Mva1269I GAATGC 1 cut(s) 733
MvnI CGCG 5 cut(s) 278, 330, 437, 554, 602
MwoI GCNNNNNNNGC 3 cut(s) 201, 880, 911
NarI GGCGCC 1 cut(s) 1022
NciI CCSGG 1 cut(s) 482
NcoI CCATGG 1 cut(s) 1057
NlaIII CATG 4 cut(s) 46, 944, 988, 1061
NlaIV GGNNCC 4 cut(s) 485, 520, 863, 1023
NmuCI GTSAC 3 cut(s) 781, 944, 964
NruI TCGCGA 2 cut(s) 278, 437
PaeR7I CTCGAG 1 cut(s) 1068
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 768
PctI GAATGC 1 cut(s) 733
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 2 cut(s) 460, 502
PkrI GCNGC 7 cut(s) 76, 220, 556, 693, 732, 798, 954
Ple19I CGATCG 1 cut(s) 282
PleI GAGTC 7 cut(s) 101, 113, 119, 281, 406, 669, 913
PluTI GGCGCC 1 cut(s) 1025
PpsI GAGTC 7 cut(s) 101, 113, 119, 281, 406, 669, 913
Psp124BI GAGCTC 3 cut(s) 246, 701, 779
PspEI GGTNACC 1 cut(s) 944
PspN4I GGNNCC 4 cut(s) 485, 520, 863, 1023
PspPI GGNCC 3 cut(s) 469, 484, 587
PsuI RGATCY 2 cut(s) 489, 518
PvuI CGATCG 1 cut(s) 282
RgaI GCGATCGC 1 cut(s) 282
RruI TCGCGA 2 cut(s) 278, 437
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SacI GAGCTC 3 cut(s) 246, 701, 779
SapI GCTCTTC 1 cut(s) 251
SatI GCNGC 7 cut(s) 75, 219, 555, 692, 731, 797, 953
Sau96I GGNCC 3 cut(s) 469, 484, 587
SchI GAGTC 7 cut(s) 101, 113, 119, 281, 406, 670, 913
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 4 cut(s) 246, 679, 701, 779
SfaAI GCGATCGC 1 cut(s) 282
SfoI GGCGCC 1 cut(s) 1023
Sfr274I CTCGAG 1 cut(s) 1068
SgfI GCGATCGC 1 cut(s) 282
SinI GGWCC 3 cut(s) 469, 484, 587
SlaI CTCGAG 1 cut(s) 1068
SmlI CTYRAG 5 cut(s) 338, 393, 845, 926, 1068
SmoI CTYRAG 5 cut(s) 338, 393, 845, 926, 1068
Sse9I AATT 1 cut(s) 992
SsiI CCGC 9 cut(s) 31, 75, 150, 193, 328, 554, 602, 630, 797
SspDI GGCGCC 1 cut(s) 1021
SstI GAGCTC 3 cut(s) 246, 701, 779
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 1 cut(s) 1057
TaaI ACNGT 2 cut(s) 433, 469
TaiI ACGT 3 cut(s) 165, 579, 774
TaqI TCGA 6 cut(s) 372, 527, 701, 1002, 1069, 1077
TasI AATT 1 cut(s) 992
TauI GCSGC 3 cut(s) 77, 557, 799
TfiI GAWTC 2 cut(s) 460, 502
TscAI CASTG 2 cut(s) 912, 973
TseFI GTSAC 3 cut(s) 781, 944, 964
TseI GCWGC 4 cut(s) 218, 691, 730, 952
Tsp45I GTSAC 3 cut(s) 781, 944, 964
TspDTI ATGAA 2 cut(s) 929, 973
TspGWI ACGGA 2 cut(s) 511, 600
TspRI CASTG 2 cut(s) 912, 973
VpaK11BI GGWCC 3 cut(s) 469, 484, 587
XhoI CTCGAG 1 cut(s) 1068
XmnI GAANNNNTTC 1 cut(s) 506
ZraI GACGTC 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.