Rorug06G0332500

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001427
Physical Location & Seq
Forward (+)
48531649 .. 48533220
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0332500.1

Sequence Viewer

Length: 858 bp
ATGAGTGCGAGGCAGCGAGTGAGGGCGAGTGAGGGCTCCGACTCGGGCGAGTTGGGGATTCACAACGAGCGCGTGCTTTATCTCGTCTTCGAGTCCATGAAATGGGACATCCACGCGCTCTGCTCCACCGCCTCTGTCAACCGGAAGCTGCGCGCCGTCGTCAACCGCCTGCTCTGGCGGGAGGTCTGCCTCTACCGCGCGCCGCGGATGACAGCGACCTTGACGAACGGCGCCCTCAACGGGCGGATCGGCGGCGGGTGGCACACGCTCGCCAAGCTCATGTTCTTCTGCTGCGGCTGCAAGCCGACTCGGCATTTCAAGCTGAGTCAACCCACCCCGGGTCACCGGGTCAAGGCGTCGCGGTTCTCGAAGACCTCCGGCCAGAGCTTCCTGTCGAAGAACTGCCGGGGGGACCTGCTCTACGTCAGCGACATGTGCGAGCACCAGACCGGGGATAAGGAGGAGGATCACCTCGGGATCTACCGAGGGGTGTTTCGGGGATTTCACAGGTCGAGGACGATGGCCTGCTTGATCGAGCGGCGGGTGAAGCTGGAGGAGAGCGTCATGTGCCCTTACTGTGGGGCCCGCGTGTGGAGCATGACCGCGGCTCGGCTCGTCCCCAAGAGCGCGGCGCGGCGGCTCGGCTCGCACGACGGGGCGTTGGAGTATTTCGTGTGCGTGAACGGGCACTTGTACGGCAGTTGCTGGCTGGTGCCGTTGTCGTCGGATGAGGATGAGGATGAGGAGGAGGAGGAGGTGGAATATTATTCGGACGGTCGCCGTAGAATTACCTACGACGACCGGACGGCGACGAATGGAAGCCTCGGCTCGATGGGAGAGGAAGTTGTGGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

285

Amino Acids

32.22

Weight (kDa)

8.23

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 423
AccB1I GGYRCC 2 cut(s) 230, 712
AccB7I CCANNNNNTGG 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 538
AclWI GGATC 3 cut(s) 254, 474, 485
AcoI YGGCCR 1 cut(s) 379
AcyI GRCGYC 2 cut(s) 231, 356
AfaI GTAC 1 cut(s) 695
AfiI CCNNNNNNNGG 8 cut(s) 102, 240, 338, 352, 451, 578, 591, 609
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 5 cut(s) 148, 277, 322, 387, 550
AluI AGCT 5 cut(s) 148, 277, 322, 387, 550
Alw21I GWGCWC 1 cut(s) 444
AlwI GGATC 3 cut(s) 254, 474, 485
AlwNI CAGNNNCTG 1 cut(s) 705
Ama87I CYCGRG 3 cut(s) 43, 337, 473
AoxI GGCC 3 cut(s) 379, 522, 582
ApaI GGGCCC 1 cut(s) 586
ApeKI GCWGC 4 cut(s) 13, 148, 291, 297
AspLEI GCGC 9 cut(s) 72, 118, 153, 155, 200, 202, 233, 629, 634
AspS9I GGNCC 3 cut(s) 412, 582, 583
AsuC2I CCSGG 5 cut(s) 338, 339, 347, 407, 451
AsuHPI GGTGA 3 cut(s) 335, 461, 556
AvaI CYCGRG 3 cut(s) 43, 337, 473
AvaII GGWCC 1 cut(s) 412
BaeGI GKGCMC 3 cut(s) 572, 586, 690
BanI GGYRCC 2 cut(s) 230, 712
BanII GRGCYC 2 cut(s) 38, 586
BbsI GAAGAC 2 cut(s) 79, 377
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 4 cut(s) 25, 135, 278, 284
BccI CCATC 2 cut(s) 514, 826
BceAI ACGGC 6 cut(s) 140, 244, 700, 712, 765, 822
BcnI CCSGG 5 cut(s) 338, 339, 347, 407, 451
BfaI CTAG 1 cut(s) 856
BfoI RGCGCY 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 423
BglI GCCNNNNNGGC 1 cut(s) 310
Bme1390I CCNGG 5 cut(s) 338, 339, 347, 407, 451
Bme18I GGWCC 1 cut(s) 412
BmeT110I CYCGRG 3 cut(s) 43, 337, 473
BmgT120I GGNCC 3 cut(s) 412, 582, 583
BmiI GGNNCC 6 cut(s) 37, 232, 413, 583, 584, 714
BmrFI CCNGG 5 cut(s) 338, 339, 347, 407, 451
BpiI GAAGAC 2 cut(s) 79, 377
BpmI CTGGAG 1 cut(s) 572
BpuMI CCSGG 5 cut(s) 338, 339, 347, 407, 451
BsaHI GRCGYC 2 cut(s) 231, 356
BsaJI CCNNGG 9 cut(s) 203, 336, 337, 406, 450, 472, 484, 603, 823
BsaWI WCCGGW 2 cut(s) 141, 801
BsaXI ACNNNNNCTCC 2 cut(s) 828, 858
Bsc4I CCNNNNNNNGG 8 cut(s) 102, 240, 338, 352, 451, 578, 591, 609
BseDI CCNNGG 9 cut(s) 203, 336, 337, 406, 450, 472, 484, 603, 823
BseGI GGATG 5 cut(s) 108, 213, 733, 739, 745
BseLI CCNNNNNNNGG 8 cut(s) 102, 240, 338, 352, 451, 578, 591, 609
BseMII CTCAG 1 cut(s) 314
BsePI GCGCGC 2 cut(s) 151, 198
BseRI GAGGAG 6 cut(s) 476, 569, 758, 761, 764, 767
BseSI GKGCMC 3 cut(s) 572, 586, 690
BseXI GCAGC 4 cut(s) 25, 135, 278, 284
Bsh1285I CGRYCG 2 cut(s) 778, 802
BshFI GGCC 3 cut(s) 381, 524, 584
BshNI GGYRCC 2 cut(s) 230, 712
BsiEI CGRYCG 2 cut(s) 778, 802
BsiHKAI GWGCWC 1 cut(s) 444
BsiHKCI CYCGRG 3 cut(s) 43, 337, 473
BsiSI CCGG 7 cut(s) 142, 338, 346, 378, 406, 450, 802
BslFI GGGAC 3 cut(s) 119, 425, 602
BslI CCNNNNNNNGG 8 cut(s) 102, 240, 338, 352, 451, 578, 591, 609
BsmFI GGGAC 3 cut(s) 119, 425, 602
BsnI GGCC 3 cut(s) 381, 524, 584
BsoBI CYCGRG 3 cut(s) 43, 337, 473
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 5 cut(s) 38, 444, 572, 586, 690
Bsp143I GATC 4 cut(s) 246, 466, 477, 531
BspANI GGCC 3 cut(s) 381, 524, 584
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 6 cut(s) 37, 232, 413, 583, 584, 714
BspMI ACCTGC 1 cut(s) 423
BspPI GGATC 3 cut(s) 254, 474, 485
BspT107I GGYRCC 2 cut(s) 230, 712
BsrBI CCGCTC 1 cut(s) 538
BssECI CCNNGG 9 cut(s) 203, 336, 337, 406, 450, 472, 484, 603, 823
BssHII GCGCGC 2 cut(s) 151, 198
BssMI GATC 4 cut(s) 246, 466, 477, 531
BssNI GRCGYC 2 cut(s) 231, 356
Bst4CI ACNGT 2 cut(s) 578, 776
BstACI GRCGYC 2 cut(s) 231, 356
BstDEI CTNAG 1 cut(s) 323
BstDSI CCRYGG 2 cut(s) 203, 603
BstEII GGTNACC 1 cut(s) 341
BstF5I GGATG 5 cut(s) 108, 213, 733, 739, 745
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 9 cut(s) 72, 118, 153, 155, 200, 202, 233, 629, 634
BstKTI GATC 4 cut(s) 249, 469, 480, 534
BstMBI GATC 4 cut(s) 246, 466, 477, 531
BstMCI CGRYCG 2 cut(s) 778, 802
BstNSI RCATGY 1 cut(s) 436
BstPI GGTNACC 1 cut(s) 341
BstSCI CCNGG 5 cut(s) 336, 337, 345, 405, 449
BstSLI GKGCMC 3 cut(s) 572, 586, 690
BstV1I GCAGC 4 cut(s) 25, 135, 278, 284
BstV2I GAAGAC 2 cut(s) 79, 377
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
BsuRI GGCC 3 cut(s) 381, 524, 584
BtgI CCRYGG 2 cut(s) 203, 603
BtsCI GGATG 5 cut(s) 108, 213, 733, 739, 745
BveI ACCTGC 1 cut(s) 423
CaiI CAGNNNCTG 1 cut(s) 705
CfoI GCGC 9 cut(s) 72, 118, 153, 155, 200, 202, 233, 629, 634
Cfr13I GGNCC 3 cut(s) 412, 582, 583
Cfr42I CCGCGG 2 cut(s) 206, 606
Cfr9I CCCGGG 1 cut(s) 337
CseI GACGC 2 cut(s) 345, 550
Csp6I GTAC 1 cut(s) 694
CviAII CATG 5 cut(s) 97, 280, 433, 565, 598
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 1 cut(s) 323
DinI GGCGCC 1 cut(s) 232
DpnI GATC 4 cut(s) 248, 468, 479, 533
DpnII GATC 4 cut(s) 246, 466, 477, 531
EaeI YGGCCR 1 cut(s) 379
EciI GGCGGA 1 cut(s) 259
Eco24I GRGCYC 2 cut(s) 38, 586
Eco47I GGWCC 1 cut(s) 412
Eco88I CYCGRG 3 cut(s) 43, 337, 473
Eco91I GGTNACC 1 cut(s) 341
EcoO109I RGGNCCY 2 cut(s) 412, 582
EcoO65I GGTNACC 1 cut(s) 341
EcoT38I GRGCYC 2 cut(s) 38, 586
EgeI GGCGCC 1 cut(s) 232
EheI GGCGCC 1 cut(s) 232
FaeI CATG 5 cut(s) 100, 283, 436, 568, 601
FaiI YATR 5 cut(s) 98, 281, 434, 566, 599
FaqI GGGAC 3 cut(s) 119, 425, 602
FatI CATG 5 cut(s) 96, 279, 432, 564, 597
FauI CCCGC 4 cut(s) 171, 248, 534, 593
FokI GGATG 5 cut(s) 95, 220, 740, 746, 752
FriOI GRGCYC 2 cut(s) 38, 586
FspBI CTAG 1 cut(s) 856
GlaI GCGC 9 cut(s) 71, 117, 152, 154, 199, 201, 232, 628, 633
GsuI CTGGAG 1 cut(s) 572
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 3 cut(s) 381, 524, 584
HapII CCGG 7 cut(s) 142, 338, 346, 378, 406, 450, 802
HgaI GACGC 2 cut(s) 345, 550
HhaI GCGC 9 cut(s) 72, 118, 153, 155, 200, 202, 233, 629, 634
Hin1I GRCGYC 2 cut(s) 231, 356
Hin1II CATG 5 cut(s) 100, 283, 436, 568, 601
Hin6I GCGC 9 cut(s) 70, 116, 151, 153, 198, 200, 231, 627, 632
HinP1I GCGC 9 cut(s) 70, 116, 151, 153, 198, 200, 231, 627, 632
HincII GTYRAC 3 cut(s) 139, 163, 329
HindII GTYRAC 3 cut(s) 139, 163, 329
HinfI GANTC 5 cut(s) 41, 58, 92, 307, 325
HpaII CCGG 7 cut(s) 142, 338, 346, 378, 406, 450, 802
HphI GGTGA 3 cut(s) 335, 461, 556
Hpy166II GTNNAC 4 cut(s) 139, 163, 329, 682
Hpy188I TCNGA 3 cut(s) 40, 727, 772
Hpy188III TCNNGA 2 cut(s) 367, 475
Hpy8I GTNNAC 4 cut(s) 139, 163, 329, 682
Hpy99I CGWCG 6 cut(s) 161, 361, 656, 727, 800, 814
HpyCH4III ACNGT 2 cut(s) 578, 776
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 2 cut(s) 231, 356
Hsp92II CATG 5 cut(s) 100, 283, 436, 568, 601
HspAI GCGC 9 cut(s) 70, 116, 151, 153, 198, 200, 231, 627, 632
KasI GGCGCC 1 cut(s) 230
KspI CCGCGG 2 cut(s) 206, 606
Kzo9I GATC 4 cut(s) 246, 466, 477, 531
LmnI GCTCC 3 cut(s) 41, 128, 594
Lsp1109I GCAGC 4 cut(s) 25, 135, 278, 284
MaeI CTAG 1 cut(s) 856
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 341
MalI GATC 4 cut(s) 248, 468, 479, 533
MbiI CCGCTC 1 cut(s) 538
MboI GATC 4 cut(s) 246, 466, 477, 531
MboII GAAGA 4 cut(s) 79, 277, 382, 409
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 5 cut(s) 38, 444, 572, 586, 690
MluCI AATT 1 cut(s) 786
Mly113I GGCGCC 1 cut(s) 231
MlyI GAGTC 4 cut(s) 35, 101, 301, 334
MmeI TCCRAC 3 cut(s) 63, 642, 705
MspA1I CMGCKG 2 cut(s) 205, 605
MspI CCGG 7 cut(s) 142, 338, 346, 378, 406, 450, 802
MspR9I CCNGG 5 cut(s) 338, 339, 347, 407, 451
MteI GCGCNGCGC 1 cut(s) 630
NarI GGCGCC 1 cut(s) 231
NciI CCSGG 5 cut(s) 338, 339, 347, 407, 451
NdeII GATC 4 cut(s) 246, 466, 477, 531
NlaIII CATG 5 cut(s) 100, 283, 436, 568, 601
NlaIV GGNNCC 6 cut(s) 37, 232, 413, 583, 584, 714
NmeAIII GCCGAG 4 cut(s) 289, 589, 621, 804
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 436
PauI GCGCGC 2 cut(s) 151, 198
PciI ACATGT 1 cut(s) 432
PcsI WCGNNNNNNNCGW 2 cut(s) 365, 648
PfeI GAWTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 102
PleI GAGTC 4 cut(s) 35, 100, 301, 333
PluTI GGCGCC 1 cut(s) 234
PpsI GAGTC 4 cut(s) 35, 100, 301, 333
PpuMI RGGWCCY 1 cut(s) 412
PscI ACATGT 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 412
PspEI GGTNACC 1 cut(s) 341
PspN4I GGNNCC 6 cut(s) 37, 232, 413, 583, 584, 714
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 3 cut(s) 412, 582, 583
PspPPI RGGWCCY 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 705
PsuI RGATCY 1 cut(s) 477
PteI GCGCGC 2 cut(s) 151, 198
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
SacII CCGCGG 2 cut(s) 206, 606
Sau3AI GATC 4 cut(s) 246, 466, 477, 531
Sau96I GGNCC 3 cut(s) 412, 582, 583
SchI GAGTC 4 cut(s) 35, 101, 301, 334
ScrFI CCNGG 5 cut(s) 338, 339, 347, 407, 451
SduI GDGCHC 5 cut(s) 38, 444, 572, 586, 690
SfoI GGCGCC 1 cut(s) 232
Sfr303I CCGCGG 2 cut(s) 206, 606
SgrBI CCGCGG 2 cut(s) 206, 606
SinI GGWCC 1 cut(s) 412
SmaI CCCGGG 1 cut(s) 339
Sse9I AATT 1 cut(s) 786
SspDI GGCGCC 1 cut(s) 230
SspI AATATT 1 cut(s) 764
SspMI CTAG 1 cut(s) 856
StyD4I CCNGG 5 cut(s) 336, 337, 345, 405, 449
TaaI ACNGT 2 cut(s) 578, 776
TaiI ACGT 1 cut(s) 426
TaqI TCGA 6 cut(s) 90, 368, 395, 512, 534, 830
TasI AATT 1 cut(s) 786
TauI GCSGC 8 cut(s) 205, 255, 297, 541, 608, 632, 637, 640
TfiI GAWTC 1 cut(s) 58
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 4 cut(s) 13, 148, 291, 297
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 412
XceI RCATGY 1 cut(s) 436
XmaI CCCGGG 1 cut(s) 337
XspI CTAG 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.