Rmu_sc0018619.1_g000004

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018619.1
OG0001427
Physical Location & Seq
Forward (+)
13241 .. 14910
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018619.1_g000004.1.cds

Sequence Viewer

Length: 1035 bp
atggccgtcatcctcgctgccatcgcaatctctatgaccctccgctccgaccccactgcccaaacccccaaatccgccacacccatcagccacgtcatctctctcagcgcctcaagaactctccgggcctctggcttcaccgtcacggcggcactcctccaaatctcgccggagctcttcctctcctcgccgaactccaccatcttcgcaatcgccaactcccacatctccaacgcctctctccctcctcacctctttagagacctcctcaaataccacacctctccagttagggtttcgatcgaagacctgatggataagcctcaaggttcttgcttgccgactctgtaccggaaaaagagcctcgcgatcacgagaattgatcggaagaatcggatggtccagatcaaatgggtttgggtctcgcacccgaatctgtttgtggaaggatccgtttcgattcacggcgttcttggccccttcgcgattgtagatcccgattatgacgtcattcacgtgcctgtgtgcgactccaatttgagtgttgtttctggttctggtggattgaagaagaataagagaaatgtggaatgtggtcgaattgttcgattgctgagctcaaaggggtttgtgccatttgcaattgggttgcattatgttcttgatgggattcttgaagatgagagaaatgtgagctctgtgacgatttttgtgccaccaagattggagcttggagctcatcatcatcctcgggctttgcttgagaagattgtgaggtttcacattgtgcctcagaggcttacacacagggagctttcggccttgcctgcgaggactctgctcaggactatggttcatggtgatcagcctctttctgagctgagagagaggaatggttctcatcgtcatcttacgtcgtcctttagacttaagattgaacaagaatccatacttgagcttccttctcaccactgtgaggtcatagtcattgagagactaccatctggggtatttgccgatccatttgagctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

344

Amino Acids

38.12

Weight (kDa)

9.48

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 510
AccBSI CCGCTC 1 cut(s) 45
AccII CGCG 2 cut(s) 368, 485
AciI CCGC 3 cut(s) 43, 75, 149
AclWI GGATC 4 cut(s) 444, 457, 488, 1013
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 517
AcyI GRCGYC 1 cut(s) 507
AdeI CACNNNGTG 1 cut(s) 787
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 976
AflII CTTAAG 1 cut(s) 929
AgsI TTSAA 3 cut(s) 568, 677, 938
AjiI CACGTC 1 cut(s) 94
AleI CACNNNNGTG 1 cut(s) 972
AluBI AGCT 9 cut(s) 175, 618, 696, 730, 737, 814, 880, 958, 1030
AluI AGCT 9 cut(s) 175, 618, 696, 730, 737, 814, 880, 958, 1030
Alw21I GWGCWC 4 cut(s) 177, 620, 698, 739
Alw26I GTCTC 3 cut(s) 255, 427, 988
AlwI GGATC 4 cut(s) 444, 457, 488, 1013
Ama87I CYCGRG 1 cut(s) 750
AoxI GGCC 4 cut(s) 3, 126, 475, 819
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 126, 400, 476
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 4 cut(s) 130, 242, 872, 959
AvaI CYCGRG 1 cut(s) 750
AvaII GGWCC 1 cut(s) 400
BamHI GGATCC 1 cut(s) 449
BanII GRGCYC 4 cut(s) 177, 620, 698, 739
BauI CACGAG 1 cut(s) 373
BbrPI CACGTG 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 4 cut(s) 177, 620, 698, 739
BbvI GCAGC 1 cut(s) 4
BccI CCATC 7 cut(s) 29, 92, 209, 307, 391, 659, 1009
BceAI ACGGC 2 cut(s) 162, 481
BcgI CGANNNNNNTGC 6 cut(s) 38, 72, 694, 728, 820, 854
BclI TGATCA 1 cut(s) 862
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 3 cut(s) 255, 427, 988
BfoI RGCGCY 1 cut(s) 111
BfrI CTTAAG 1 cut(s) 929
BglI GCCNNNNNGGC 1 cut(s) 796
BisI GCNGC 2 cut(s) 18, 150
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 2 cut(s) 19, 151
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 750
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 3 cut(s) 126, 400, 476
BmiI GGNNCC 2 cut(s) 451, 478
BmrFI CCNGG 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 252, 284
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 842
Bpu1102I GCTNAGC 1 cut(s) 614
BpuEI CTTGAG 4 cut(s) 97, 309, 782, 974
BpuMI CCSGG 1 cut(s) 125
BsaAI YACGTR 1 cut(s) 517
BsaHI GRCGYC 1 cut(s) 507
BsaI GGTCTC 2 cut(s) 255, 427
BsaJI CCNNGG 1 cut(s) 749
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 976
Bse1I ACTGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 749
BseGI GGATG 3 cut(s) 9, 402, 745
BseLI CCNNNNNNNGG 1 cut(s) 976
BseMII CTCAG 6 cut(s) 118, 605, 806, 856, 867, 872
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 4 cut(s) 146, 175, 237, 257
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 2 cut(s) 368, 485
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 4 cut(s) 5, 128, 477, 821
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 4 cut(s) 177, 620, 698, 739
BsiHKCI CYCGRG 1 cut(s) 750
BsiSI CCGG 3 cut(s) 124, 170, 352
BslI CCNNNNNNNGG 1 cut(s) 976
BsmAI GTCTC 3 cut(s) 255, 427, 988
BsnI GGCC 4 cut(s) 5, 128, 477, 821
Bso31I GGTCTC 2 cut(s) 255, 427
BsoBI CYCGRG 1 cut(s) 750
Bsp1286I GDGCHC 4 cut(s) 177, 620, 698, 739
Bsp143I GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 862, 1018
Bsp1720I GCTNAGC 1 cut(s) 614
Bsp68I TCGCGA 2 cut(s) 368, 485
BspACI CCGC 3 cut(s) 43, 75, 149
BspANI GGCC 4 cut(s) 5, 128, 477, 821
BspCNI CTCAG 6 cut(s) 117, 606, 805, 855, 868, 873
BspFNI CGCG 2 cut(s) 368, 485
BspLI GGNNCC 2 cut(s) 451, 478
BspPI GGATC 4 cut(s) 444, 457, 488, 1013
BspQI GCTCTTC 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 929
BspTNI GGTCTC 2 cut(s) 255, 427
BsrBI CCGCTC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 749
BssMI GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 862, 1018
BssNI GRCGYC 1 cut(s) 507
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst4CI ACNGT 2 cut(s) 142, 974
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 507
BstAFI CTTAAG 1 cut(s) 929
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 338, 828
BstDEI CTNAG 6 cut(s) 104, 614, 792, 842, 876, 881
BstF5I GGATG 3 cut(s) 9, 402, 745
BstFNI CGCG 2 cut(s) 368, 485
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 8 cut(s) 303, 372, 385, 408, 452, 496, 865, 1021
BstMAI GTCTC 3 cut(s) 255, 427, 988
BstMBI GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 862, 1018
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 4 cut(s) 23, 474, 796, 827
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 2 cut(s) 368, 485
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 449, 493
BstYI RGATCY 2 cut(s) 449, 493
BsuRI GGCC 4 cut(s) 5, 128, 477, 821
BtgZI GCGATG 1 cut(s) 7
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 3 cut(s) 9, 402, 745
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 970
BtuMI TCGCGA 2 cut(s) 368, 485
Cac8I GCNNGC 2 cut(s) 338, 828
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 126, 400, 476
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 1 cut(s) 857
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 6 cut(s) 104, 614, 792, 842, 876, 881
DpnI GATC 8 cut(s) 302, 371, 384, 407, 451, 495, 864, 1020
DpnII GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 862, 1018
DraIII CACNNNGTG 1 cut(s) 787
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 4 cut(s) 175, 618, 696, 737
Eco24I GRGCYC 4 cut(s) 177, 620, 698, 739
Eco31I GGTCTC 2 cut(s) 255, 427
Eco47I GGWCC 1 cut(s) 400
Eco53kI GAGCTC 4 cut(s) 175, 618, 696, 737
Eco72I CACGTG 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 750
EcoICRI GAGCTC 4 cut(s) 175, 618, 696, 737
EcoT38I GRGCYC 4 cut(s) 177, 620, 698, 739
FaeI CATG 1 cut(s) 860
FaiI YATR 7 cut(s) 35, 504, 657, 851, 858, 950, 983
FatI CATG 1 cut(s) 856
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 2 cut(s) 18, 150
FokI GGATG 2 cut(s) 409, 732
FriOI GRGCYC 4 cut(s) 177, 620, 698, 739
Fsp4HI GCNGC 2 cut(s) 18, 150
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 18, 150
GsuI CTGGAG 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 4 cut(s) 5, 128, 477, 821
HapII CCGG 3 cut(s) 124, 170, 352
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 1 cut(s) 860
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 8 cut(s) 343, 391, 433, 460, 530, 670, 835, 944
HpaII CCGG 3 cut(s) 124, 170, 352
HphI GGTGA 4 cut(s) 130, 242, 872, 959
Hpy188I TCNGA 5 cut(s) 49, 387, 396, 795, 877
Hpy188III TCNNGA 9 cut(s) 114, 367, 373, 403, 484, 497, 662, 674, 844
Hpy99I CGWCG 1 cut(s) 919
HpyAV CCTTC 3 cut(s) 440, 490, 972
HpyCH4III ACNGT 2 cut(s) 142, 974
HpyCH4IV ACGT 4 cut(s) 93, 507, 516, 914
HpyCH4V TGCA 2 cut(s) 641, 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 474, 796, 827
HpyF3I CTNAG 6 cut(s) 104, 614, 792, 842, 876, 881
HpySE526I ACGT 4 cut(s) 93, 507, 516, 914
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 1 cut(s) 860
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 862, 1018
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 5 cut(s) 50, 172, 727, 734, 811
Lsp1109I GCAGC 1 cut(s) 4
MaeII ACGT 4 cut(s) 93, 507, 516, 914
MaeIII GTNAC 2 cut(s) 142, 700
MalI GATC 8 cut(s) 302, 371, 384, 407, 451, 495, 864, 1020
MbiI CCGCTC 1 cut(s) 45
MboI GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 862, 1018
MboII GAAGA 8 cut(s) 169, 196, 317, 400, 580, 583, 689, 778
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 2 cut(s) 449, 493
MhlI GDGCHC 4 cut(s) 177, 620, 698, 739
MluCI AATT 4 cut(s) 378, 535, 600, 642
MlyI GAGTC 3 cut(s) 337, 524, 829
MmeI TCCRAC 2 cut(s) 72, 255
MseI TTAA 2 cut(s) 930, 1033
MslI CAYNNNNRTG 2 cut(s) 515, 972
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 3 cut(s) 124, 170, 352
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 642
MvnI CGCG 2 cut(s) 368, 485
MwoI GCNNNNNNNGC 4 cut(s) 23, 474, 796, 827
NciI CCSGG 1 cut(s) 125
NdeII GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 862, 1018
NlaIII CATG 1 cut(s) 860
NlaIV GGNNCC 2 cut(s) 451, 478
NmuCI GTSAC 2 cut(s) 142, 700
NruI TCGCGA 2 cut(s) 368, 485
OliI CACNNNNGTG 1 cut(s) 972
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 2 cut(s) 513, 604
PfeI GAWTC 5 cut(s) 391, 433, 460, 670, 944
PkrI GCNGC 2 cut(s) 19, 151
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 3 cut(s) 337, 524, 829
PmaCI CACGTG 1 cut(s) 517
PmlI CACGTG 1 cut(s) 517
PpsI GAGTC 3 cut(s) 337, 524, 829
Ppu21I YACGTR 1 cut(s) 517
Psp124BI GAGCTC 4 cut(s) 177, 620, 698, 739
PspCI CACGTG 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 451, 478
PspPI GGNCC 3 cut(s) 126, 400, 476
PsuI RGATCY 2 cut(s) 449, 493
PvuI CGATCG 1 cut(s) 303
RruI TCGCGA 2 cut(s) 368, 485
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 515, 972
SacI GAGCTC 4 cut(s) 177, 620, 698, 739
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 930, 1033
SatI GCNGC 2 cut(s) 18, 150
Sau3AI GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 862, 1018
Sau96I GGNCC 3 cut(s) 126, 400, 476
SchI GAGTC 3 cut(s) 337, 524, 829
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 4 cut(s) 177, 620, 698, 739
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 2 cut(s) 515, 972
SmlI CTYRAG 5 cut(s) 112, 324, 761, 929, 953
SmoI CTYRAG 5 cut(s) 112, 324, 761, 929, 953
Sse9I AATT 4 cut(s) 378, 535, 600, 642
SsiI CCGC 3 cut(s) 43, 75, 149
SstI GAGCTC 4 cut(s) 177, 620, 698, 739
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 142, 974
TaiI ACGT 4 cut(s) 96, 510, 519, 917
TaqI TCGA 5 cut(s) 299, 303, 458, 598, 607
TasI AATT 4 cut(s) 378, 535, 600, 642
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 5 cut(s) 391, 433, 460, 670, 944
Tru1I TTAA 2 cut(s) 930, 1033
Tru9I TTAA 2 cut(s) 930, 1033
TscAI CASTG 2 cut(s) 61, 977
TseFI GTSAC 2 cut(s) 142, 700
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 2 cut(s) 142, 700
TspDTI ATGAA 1 cut(s) 845
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 2 cut(s) 61, 977
Vha464I CTTAAG 1 cut(s) 929
VpaK11BI GGWCC 1 cut(s) 400
ZraI GACGTC 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.