Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7999010.1

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 303

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7999010.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ccaagattggagcttggagctcatcatcatcctcgggctttgcttgagaagattgtgaggtttcacattgtgcctcagaggcttacacacagggagctttcggcattgcctgcgaggactctgctcaggactatggttcatggtgatcagcctttggaagtcactgggtttatgagtttcatgccggaattggtcatcaatggagtgaggattgtggcgcccgacatctattcttcgaacaacttggttgtccatgggatttcccgagcttttgaggtgaatgatctgcctaaaacccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

100

Amino Acids

11.32

Weight (kDa)

9.7

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	70
AluBI	AGCT	4 cut(s)	13, 20, 97, 269
AluI	AGCT	4 cut(s)	13, 20, 97, 269
Alw21I	GWGCWC	1 cut(s)	22
Ama87I	CYCGRG	2 cut(s)	33, 264
AspLEI	GCGC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	155, 289
AsuII	TTCGAA	1 cut(s)	236
AvaI	CYCGRG	2 cut(s)	33, 264
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BclI	TGATCA	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	221
BglI	GCCNNNNNGGC	1 cut(s)	79
BmeT110I	CYCGRG	2 cut(s)	33, 264
BmiI	GGNNCC	1 cut(s)	219
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	32, 253
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	32, 253
BseGI	GGATG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	89, 139
BseNI	ACTGG	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	22
BsiHKCI	CYCGRG	2 cut(s)	33, 264
BsiSI	CCGG	1 cut(s)	185
BsoBI	CYCGRG	2 cut(s)	33, 264
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	145, 283
Bsp19I	CCATGG	1 cut(s)	253
BspCNI	CTCAG	2 cut(s)	88, 138
BspLI	GGNNCC	1 cut(s)	219
BspT104I	TTCGAA	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	32, 253
BssMI	GATC	2 cut(s)	145, 283
BssNI	GRCGYC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	75, 125
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	148, 286
BstMBI	GATC	2 cut(s)	145, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 110
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	220
CviAII	CATG	3 cut(s)	140, 181, 254
CviJI	RGCY	7 cut(s)	13, 20, 38, 82, 97, 151, 269
CviKI_1	RGCY	7 cut(s)	13, 20, 38, 82, 97, 151, 269
DdeI	CTNAG	2 cut(s)	75, 125
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	2 cut(s)	147, 285
DpnII	GATC	2 cut(s)	145, 283
DraIII	CACNNNGTG	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	20
Eco88I	CYCGRG	2 cut(s)	33, 264
EcoICRI	GAGCTC	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	22
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	3 cut(s)	143, 184, 257
FaiI	YATR	5 cut(s)	134, 141, 173, 182, 255
FatI	CATG	3 cut(s)	139, 180, 253
FbaI	TGATCA	1 cut(s)	145
FokI	GGATG	1 cut(s)	15
FriOI	GRGCYC	1 cut(s)	22
GlaI	GCGC	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	221
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	143, 184, 257
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	155, 289
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	127, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 110
HpyF3I	CTNAG	2 cut(s)	75, 125
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	143, 184, 257
HspAI	GCGC	1 cut(s)	218
KasI	GGCGCC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	145, 283
LmnI	GCTCC	3 cut(s)	10, 17, 94
LpnPI	CCDG	5 cut(s)	76, 112, 123, 150, 198
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	147, 285
MboI	GATC	2 cut(s)	145, 283
MboII	GAAGA	2 cut(s)	61, 225
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	1 cut(s)	188
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	7 cut(s)	42, 51, 72, 84, 108, 201, 268
MspI	CCGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	79, 110
NarI	GGCGCC	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	145, 283
NlaIII	CATG	3 cut(s)	143, 184, 257
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	236
PleI	GAGTC	1 cut(s)	112
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	145, 283
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	6 cut(s)	15, 22, 62, 99, 271, 279
SfoI	GGCGCC	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	188
SspDI	GGCGCC	1 cut(s)	217
SstI	GAGCTC	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	253
TaqI	TCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	188
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	128, 169
TspRI	CASTG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.