Rh2AG549800

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001427
Physical Location & Seq
Forward (+)
78006852 .. 78008208
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG549800.1

Sequence Viewer

Length: 1077 bp
ATGGCGCCTTCTTCTTCTTCCTACTGCACCCGCTGGCACGCCATACTCTACTCCACTATGGCCGTCATCCTAGCCGCCATCGCAATCTCCATGACCCTCCGCTCCGACCCCACCGCCCAAACCCCCCGATCCGCCACACCCATCAGCCACGTCATCTCTCTCAGCGCCTCAAGAACTCTCCGGGCCTCAGGCTTCACCGTCACGGCGGCGCTCCTCCAAATCTCGCCGGAGCTCTTCCTCTCCTCGCCGAACTCCACCATCTTCGCAATCGCCGACTCCTACATCTCCAACGCCTCTCTCCCTCCTCACCTCCTCAGAGACCTCCTCAAATACCACACCTCGCCGATTAGGGTTTCGATCGAGGACCTGATGGAGAAGCCTCAAGGTTCTTGCTTGCCGACTCTGTACCGGAAAAAGACCCTCGCGGTCACGAGAATTGATCAGAAGAATCGGACGGTCCAGATCAACCGGGTTTGGGTCTCGCACCCGAACCTGTTTCTAGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCGTTCGCGGCCGTGGATCCCGAATATGACGTCATTCACGCGCCTGTGTGCGACTCCAATTCTAGCGTCGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTATTAGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGCTGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCACAGAGGCTTACACACAAGGAGCTTTCTGCATTGCCGGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGGGTTTATAAGTTTCATGCCGGAATTGGTCATCAATGGAGTGAGGATTGTGGCGCCCGACATCTATTCTTCGAACAACTTGGTCGTCCATGGGATTTCCCGAGCTTTCGAGGTGAATGATCTGCCTAATACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

358

Amino Acids

39.22

Weight (kDa)

9.4

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 252 - 348 3.6e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 947
AatII GACGTC 1 cut(s) 567
AccB1I GGYRCC 2 cut(s) 4, 991
AccBSI CCGCTC 1 cut(s) 102
AccII CGCG 3 cut(s) 425, 542, 575
AciI CCGC 8 cut(s) 31, 75, 100, 114, 132, 206, 425, 542
AclWI GGATC 5 cut(s) 123, 501, 514, 545, 558
AcoI YGGCCR 2 cut(s) 60, 543
AcyI GRCGYC 3 cut(s) 5, 564, 992
AdeI CACNNNGTG 1 cut(s) 844
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 2 cut(s) 475, 541
AgsI TTSAA 2 cut(s) 625, 734
AjiI CACGTC 1 cut(s) 151
AluBI AGCT 7 cut(s) 232, 675, 753, 787, 794, 871, 1043
AluI AGCT 7 cut(s) 232, 675, 753, 787, 794, 871, 1043
Alw21I GWGCWC 4 cut(s) 234, 677, 755, 796
Alw26I GTCTC 2 cut(s) 312, 484
AlwI GGATC 5 cut(s) 123, 501, 514, 545, 558
AlwNI CAGNNNCTG 1 cut(s) 928
Ama87I CYCGRG 2 cut(s) 807, 1038
AoxI GGCC 4 cut(s) 60, 183, 532, 543
ApeKI GCWGC 1 cut(s) 706
ArsI GACNNNNNNTTYG 2 cut(s) 549, 581
AspLEI GCGC 5 cut(s) 7, 167, 211, 577, 994
AspS9I GGNCC 4 cut(s) 183, 364, 457, 533
AsuC2I CCSGG 2 cut(s) 182, 470
AsuHPI GGTGA 4 cut(s) 187, 299, 929, 1063
AsuII TTCGAA 1 cut(s) 1010
AvaI CYCGRG 2 cut(s) 807, 1038
AvaII GGWCC 2 cut(s) 364, 457
AxyI CCTNAGG 1 cut(s) 187
BamHI GGATCC 2 cut(s) 506, 550
BanI GGYRCC 2 cut(s) 4, 991
BanII GRGCYC 4 cut(s) 234, 677, 755, 796
BauI CACGAG 1 cut(s) 430
Bbv12I GWGCWC 4 cut(s) 234, 677, 755, 796
BbvI GCAGC 1 cut(s) 693
BccI CCATC 5 cut(s) 86, 149, 266, 364, 716
BceAI ACGGC 5 cut(s) 47, 219, 530, 538, 676
BcgI CGANNNNNNTGC 4 cut(s) 751, 785, 877, 911
BclI TGATCA 2 cut(s) 439, 919
BcnI CCSGG 2 cut(s) 182, 470
BcoDI GTCTC 2 cut(s) 312, 484
BfaI CTAG 3 cut(s) 71, 500, 597
BfoI RGCGCY 4 cut(s) 8, 168, 212, 995
BglI GCCNNNNNGGC 1 cut(s) 853
BisI GCNGC 4 cut(s) 75, 207, 543, 707
BlpI GCTNAGC 1 cut(s) 671
BlsI GCNGC 4 cut(s) 76, 208, 544, 708
Bme1390I CCNGG 2 cut(s) 182, 470
Bme18I GGWCC 2 cut(s) 364, 457
BmeT110I CYCGRG 2 cut(s) 807, 1038
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 183, 364, 457, 533
BmiI GGNNCC 4 cut(s) 6, 508, 552, 993
BmrFI CCNGG 2 cut(s) 182, 470
BmrI ACTGGG 1 cut(s) 948
BmuI ACTGGG 1 cut(s) 948
BplI GAGNNNNNCTC 2 cut(s) 309, 341
Bpu10I CCTNAGC 1 cut(s) 899
Bpu1102I GCTNAGC 1 cut(s) 671
Bpu14I TTCGAA 1 cut(s) 1010
BpuEI CTTGAG 3 cut(s) 154, 366, 839
BpuMI CCSGG 2 cut(s) 182, 470
BsaHI GRCGYC 3 cut(s) 5, 564, 992
BsaI GGTCTC 2 cut(s) 312, 484
BsaJI CCNNGG 3 cut(s) 546, 806, 1027
BsaWI WCCGGW 1 cut(s) 408
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 541
Bse118I RCCGGY 1 cut(s) 883
Bse1I ACTGG 1 cut(s) 943
Bse21I CCTNAGG 1 cut(s) 187
Bse3DI GCAATG 2 cut(s) 646, 878
BseDI CCNNGG 3 cut(s) 546, 806, 1027
BseGI GGATG 2 cut(s) 66, 802
BseLI CCNNNNNNNGG 2 cut(s) 475, 541
BseMI GCAATG 2 cut(s) 646, 878
BseMII CTCAG 5 cut(s) 175, 201, 328, 662, 913
BseNI ACTGG 1 cut(s) 943
BseRI GAGGAG 5 cut(s) 203, 232, 294, 302, 314
BseX3I CGGCCG 1 cut(s) 543
BseXI GCAGC 1 cut(s) 693
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 3 cut(s) 425, 542, 575
Bsh1285I CGRYCG 2 cut(s) 360, 546
BshFI GGCC 4 cut(s) 62, 185, 534, 545
BshNI GGYRCC 2 cut(s) 4, 991
BsiEI CGRYCG 2 cut(s) 360, 546
BsiHKAI GWGCWC 4 cut(s) 234, 677, 755, 796
BsiHKCI CYCGRG 2 cut(s) 807, 1038
BsiSI CCGG 6 cut(s) 181, 227, 409, 469, 884, 959
BslI CCNNNNNNNGG 2 cut(s) 475, 541
BsmAI GTCTC 2 cut(s) 312, 484
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 4 cut(s) 62, 185, 534, 545
Bso31I GGTCTC 2 cut(s) 312, 484
BsoBI CYCGRG 2 cut(s) 807, 1038
Bsp119I TTCGAA 1 cut(s) 1010
Bsp1286I GDGCHC 4 cut(s) 234, 677, 755, 796
Bsp143I GATC 8 cut(s) 128, 357, 439, 462, 506, 550, 919, 1057
Bsp1720I GCTNAGC 1 cut(s) 671
Bsp19I CCATGG 1 cut(s) 1027
BspACI CCGC 8 cut(s) 31, 75, 100, 114, 132, 206, 425, 542
BspANI GGCC 4 cut(s) 62, 185, 534, 545
BspCNI CTCAG 5 cut(s) 174, 200, 327, 663, 912
BspFNI CGCG 3 cut(s) 425, 542, 575
BspLI GGNNCC 4 cut(s) 6, 508, 552, 993
BspPI GGATC 5 cut(s) 123, 501, 514, 545, 558
BspQI GCTCTTC 2 cut(s) 239, 629
BspT104I TTCGAA 1 cut(s) 1010
BspT107I GGYRCC 2 cut(s) 4, 991
BspTNI GGTCTC 2 cut(s) 312, 484
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 646, 878
BsrFI RCCGGY 1 cut(s) 883
BsrI ACTGG 1 cut(s) 943
BssAI RCCGGY 1 cut(s) 883
BssECI CCNNGG 3 cut(s) 546, 806, 1027
BssMI GATC 8 cut(s) 128, 357, 439, 462, 506, 550, 919, 1057
BssNI GRCGYC 3 cut(s) 5, 564, 992
BssSI CACGAG 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 1027
Bst2BI CACGAG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 199, 457
Bst6I CTCTTC 2 cut(s) 239, 629
BstACI GRCGYC 3 cut(s) 5, 564, 992
BstBI TTCGAA 1 cut(s) 1010
BstC8I GCNNGC 4 cut(s) 35, 39, 395, 885
BstDEI CTNAG 5 cut(s) 161, 187, 314, 671, 899
BstDSI CCRYGG 2 cut(s) 546, 1027
BstF5I GGATG 2 cut(s) 66, 802
BstFNI CGCG 3 cut(s) 425, 542, 575
BstH2I RGCGCY 4 cut(s) 8, 168, 212, 995
BstHHI GCGC 5 cut(s) 7, 167, 211, 577, 994
BstKTI GATC 8 cut(s) 131, 360, 442, 465, 509, 553, 922, 1060
BstMAI GTCTC 2 cut(s) 312, 484
BstMBI GATC 8 cut(s) 128, 357, 439, 462, 506, 550, 919, 1057
BstMCI CGRYCG 2 cut(s) 360, 546
BstMWI GCNNNNNNNGC 4 cut(s) 80, 531, 853, 884
BstSCI CCNGG 2 cut(s) 180, 468
BstUI CGCG 3 cut(s) 425, 542, 575
BstV1I GCAGC 1 cut(s) 693
BstX2I RGATCY 2 cut(s) 506, 550
BstYI RGATCY 2 cut(s) 506, 550
BstZI CGGCCG 1 cut(s) 543
Bsu36I CCTNAGG 1 cut(s) 187
BsuRI GGCC 4 cut(s) 62, 185, 534, 545
BtgI CCRYGG 2 cut(s) 546, 1027
BtgZI GCGATG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 66, 802
BtsIMutI CAGTG 1 cut(s) 936
Cac8I GCNNGC 4 cut(s) 35, 39, 395, 885
CaiI CAGNNNCTG 1 cut(s) 928
CfoI GCGC 5 cut(s) 7, 167, 211, 577, 994
Cfr10I RCCGGY 1 cut(s) 883
Cfr13I GGNCC 4 cut(s) 183, 364, 457, 533
CseI GACGC 1 cut(s) 589
Csp6I GTAC 1 cut(s) 406
CspCI CAANNNNNGTGG 2 cut(s) 762, 797
CviAII CATG 4 cut(s) 91, 914, 955, 1028
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 5 cut(s) 161, 187, 314, 671, 899
DinI GGCGCC 2 cut(s) 6, 993
DpnI GATC 8 cut(s) 130, 359, 441, 464, 508, 552, 921, 1059
DpnII GATC 8 cut(s) 128, 357, 439, 462, 506, 550, 919, 1057
DraIII CACNNNGTG 1 cut(s) 844
EaeI YGGCCR 2 cut(s) 60, 543
EagI CGGCCG 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 239, 629
EarI CTCTTC 2 cut(s) 239, 629
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 4 cut(s) 232, 675, 753, 794
EclXI CGGCCG 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 1027
Eco24I GRGCYC 4 cut(s) 234, 677, 755, 796
Eco31I GGTCTC 2 cut(s) 312, 484
Eco47I GGWCC 2 cut(s) 364, 457
Eco52I CGGCCG 1 cut(s) 543
Eco53kI GAGCTC 4 cut(s) 232, 675, 753, 794
Eco81I CCTNAGG 1 cut(s) 187
Eco88I CYCGRG 2 cut(s) 807, 1038
EcoICRI GAGCTC 4 cut(s) 232, 675, 753, 794
EcoO109I RGGNCCY 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 1027
EcoT38I GRGCYC 4 cut(s) 234, 677, 755, 796
EgeI GGCGCC 2 cut(s) 6, 993
EheI GGCGCC 2 cut(s) 6, 993
ErhI CCWWGG 1 cut(s) 1027
FaeI CATG 4 cut(s) 94, 917, 958, 1031
FaiI YATR 9 cut(s) 44, 59, 92, 561, 908, 915, 947, 956, 1029
FatI CATG 4 cut(s) 90, 913, 954, 1027
FauI CCCGC 1 cut(s) 38
FbaI TGATCA 2 cut(s) 439, 919
Fnu4HI GCNGC 4 cut(s) 75, 207, 543, 707
FokI GGATG 2 cut(s) 53, 789
FriOI GRGCYC 4 cut(s) 234, 677, 755, 796
Fsp4HI GCNGC 4 cut(s) 75, 207, 543, 707
FspBI CTAG 3 cut(s) 71, 500, 597
GlaI GCGC 5 cut(s) 6, 166, 210, 576, 993
GluI GCNGC 4 cut(s) 75, 207, 543, 707
HaeII RGCGCY 4 cut(s) 8, 168, 212, 995
HaeIII GGCC 4 cut(s) 62, 185, 534, 545
HapII CCGG 6 cut(s) 181, 227, 409, 469, 884, 959
HgaI GACGC 1 cut(s) 589
HhaI GCGC 5 cut(s) 7, 167, 211, 577, 994
Hin1I GRCGYC 3 cut(s) 5, 564, 992
Hin1II CATG 4 cut(s) 94, 917, 958, 1031
Hin6I GCGC 5 cut(s) 5, 165, 209, 575, 992
HinP1I GCGC 5 cut(s) 5, 165, 209, 575, 992
HinfI GANTC 7 cut(s) 275, 400, 448, 517, 587, 727, 892
HpaII CCGG 6 cut(s) 181, 227, 409, 469, 884, 959
HphI GGTGA 4 cut(s) 187, 299, 929, 1063
Hpy188I TCNGA 5 cut(s) 106, 317, 444, 453, 657
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 2 cut(s) 18, 497
HpyCH4III ACNGT 2 cut(s) 199, 457
HpyCH4IV ACGT 2 cut(s) 150, 564
HpyCH4V TGCA 4 cut(s) 27, 698, 709, 878
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 531, 853, 884
HpyF3I CTNAG 5 cut(s) 161, 187, 314, 671, 899
HpySE526I ACGT 2 cut(s) 150, 564
Hsp92I GRCGYC 3 cut(s) 5, 564, 992
Hsp92II CATG 4 cut(s) 94, 917, 958, 1031
HspAI GCGC 5 cut(s) 5, 165, 209, 575, 992
KasI GGCGCC 2 cut(s) 4, 991
KroI GCCGGC 1 cut(s) 883
KroNI GCCGGC 1 cut(s) 885
Ksp22I TGATCA 2 cut(s) 439, 919
Kzo9I GATC 8 cut(s) 128, 357, 439, 462, 506, 550, 919, 1057
LguI GCTCTTC 2 cut(s) 239, 629
LmnI GCTCC 6 cut(s) 107, 216, 229, 784, 791, 868
Lsp1109I GCAGC 1 cut(s) 693
MaeI CTAG 3 cut(s) 71, 500, 597
MaeII ACGT 2 cut(s) 150, 564
MaeIII GTNAC 4 cut(s) 199, 427, 757, 934
MalI GATC 8 cut(s) 130, 359, 441, 464, 508, 552, 921, 1059
MbiI CCGCTC 1 cut(s) 102
MboI GATC 8 cut(s) 128, 357, 439, 462, 506, 550, 919, 1057
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 2 cut(s) 506, 550
MhlI GDGCHC 4 cut(s) 234, 677, 755, 796
MluCI AATT 4 cut(s) 435, 592, 699, 962
Mly113I GGCGCC 2 cut(s) 5, 992
MlyI GAGTC 4 cut(s) 269, 394, 581, 886
MmeI TCCRAC 3 cut(s) 129, 312, 635
MroNI GCCGGC 1 cut(s) 883
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 6 cut(s) 181, 227, 409, 469, 884, 959
MspR9I CCNGG 2 cut(s) 182, 470
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 709
MvnI CGCG 3 cut(s) 425, 542, 575
MwoI GCNNNNNNNGC 4 cut(s) 80, 531, 853, 884
NaeI GCCGGC 1 cut(s) 885
NarI GGCGCC 2 cut(s) 5, 992
NciI CCSGG 2 cut(s) 182, 470
NcoI CCATGG 1 cut(s) 1027
NdeII GATC 8 cut(s) 128, 357, 439, 462, 506, 550, 919, 1057
NgoMIV GCCGGC 1 cut(s) 883
NlaIII CATG 4 cut(s) 94, 917, 958, 1031
NlaIV GGNNCC 4 cut(s) 6, 508, 552, 993
NmuCI GTSAC 4 cut(s) 199, 427, 757, 934
NspV TTCGAA 1 cut(s) 1010
PciSI GCTCTTC 2 cut(s) 239, 629
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 709
PdiI GCCGGC 1 cut(s) 885
PfeI GAWTC 3 cut(s) 448, 517, 727
PkrI GCNGC 4 cut(s) 76, 208, 544, 708
Ple19I CGATCG 1 cut(s) 360
PleI GAGTC 4 cut(s) 269, 394, 581, 886
PluTI GGCGCC 2 cut(s) 8, 995
PpsI GAGTC 4 cut(s) 269, 394, 581, 886
PpuMI RGGWCCY 1 cut(s) 364
PsiI TTATAA 1 cut(s) 947
Psp124BI GAGCTC 4 cut(s) 234, 677, 755, 796
Psp5II RGGWCCY 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 6, 508, 552, 993
PspPI GGNCC 4 cut(s) 183, 364, 457, 533
PspPPI RGGWCCY 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 928
PsuI RGATCY 2 cut(s) 506, 550
PvuI CGATCG 1 cut(s) 360
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SacI GAGCTC 4 cut(s) 234, 677, 755, 796
SapI GCTCTTC 2 cut(s) 239, 629
SatI GCNGC 4 cut(s) 75, 207, 543, 707
Sau3AI GATC 8 cut(s) 128, 357, 439, 462, 506, 550, 919, 1057
Sau96I GGNCC 4 cut(s) 183, 364, 457, 533
SchI GAGTC 4 cut(s) 269, 394, 581, 886
ScrFI CCNGG 2 cut(s) 182, 470
SduI GDGCHC 4 cut(s) 234, 677, 755, 796
SfoI GGCGCC 2 cut(s) 6, 993
SfuI TTCGAA 1 cut(s) 1010
SinI GGWCC 2 cut(s) 364, 457
SmlI CTYRAG 3 cut(s) 169, 381, 818
SmoI CTYRAG 3 cut(s) 169, 381, 818
Sse9I AATT 4 cut(s) 435, 592, 699, 962
SsiI CCGC 8 cut(s) 31, 75, 100, 114, 132, 206, 425, 542
SspDI GGCGCC 2 cut(s) 4, 991
SspMI CTAG 3 cut(s) 71, 500, 597
SstI GAGCTC 4 cut(s) 234, 677, 755, 796
StyD4I CCNGG 2 cut(s) 180, 468
StyI CCWWGG 1 cut(s) 1027
TaaI ACNGT 2 cut(s) 199, 457
TaiI ACGT 2 cut(s) 153, 567
TaqI TCGA 5 cut(s) 356, 360, 515, 1010, 1047
TasI AATT 4 cut(s) 435, 592, 699, 962
TauI GCSGC 3 cut(s) 77, 209, 545
TfiI GAWTC 3 cut(s) 448, 517, 727
TscAI CASTG 1 cut(s) 943
TseFI GTSAC 4 cut(s) 199, 427, 757, 934
TseI GCWGC 1 cut(s) 706
Tsp45I GTSAC 4 cut(s) 199, 427, 757, 934
TspDTI ATGAA 2 cut(s) 902, 943
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 1 cut(s) 943
VpaK11BI GGWCC 2 cut(s) 364, 457
XbaI TCTAGA 1 cut(s) 499
XspI CTAG 3 cut(s) 71, 500, 597
ZraI GACGTC 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.